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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:535569..537521 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01860.2 vs.
Match: XP_005856121.1 (methyltransferase type 11 [Nannochloropsis gaditana CCMP526]; EKU20257.1 methyltransferase type 11 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 411.8 bits (1057), Expect = 1.600e-111 Identity = 197/255 (77.25%), Postives = 215/255 (84.31%), Query Frame = 0
Query: 1 MTDEQLAVARAHVDWHMQRYGYSKPNVTFLKGVIEDLLSVGIQDATVDVCVSNCVLNLSPNKPQVLSEIFRVLKPGGELYFSDVFCDRRLPAALKGDQEVLGECLGGALYIEDFRRLLVDLGCKDFRVMDKAEIQVTDEGIAAKVGLARFHSLTLRCFKLPGLEDRCEEFGQFATYKGTMTGMPVAFDLDDSHRFETGRAVAVCGNTALMLTDTRFAPHFKVVGDTSVHYGLFQGSGVCAPPPEESSNSKFGACC 256
MT+EQLAVARAHVDWHM+RYGY K NVTF GVIEDL S+GI DA+VDVCVSNCVLNLSP+K QVL EIFRVLKPGGELYFSDVFCDRRLP L+ DQEVLGECLGGALYIED RRLL +LGCKD+R+M++ EIQ+TDE IAAKVGLARF SLTLRCFKLP LEDRCE+FGQFATY GT+ PV+F+LD H+FE GRA AVCGNTA MLT TRFAPHF V GDTSVHYGLF SGV P + S FGACC
Sbjct: 100 MTEEQLAVARAHVDWHMERYGYDKANVTFRHGVIEDLASMGIADASVDVCVSNCVLNLSPDKAQVLREIFRVLKPGGELYFSDVFCDRRLPGTLREDQEVLGECLGGALYIEDVRRLLAELGCKDYRIMEQTEIQITDEAIAAKVGLARFFSLTLRCFKLPELEDRCEDFGQFATYLGTLD--PVSFELDQGHQFEAGRARAVCGNTAAMLTHTRFAPHFSVTGDTSVHYGLFGSSGVLVSSP-HTIGSTFGACC 351
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01860.2 ID=NO12G01860.2|Name=NO12G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp AGGGTCCAAATTATCTGTCCCTAGCAGCCATGTCATTATCGGTGGCCGCG GAGGCGAATGGTATCAAGGAGAACGTCATAGAGTAAGTGCTATCTTATCG TCGTCAACATCCCCTCCACCACCCTCTCCTCATAGTGAATAGTGAACAGG AGTATGACGGTAGTGTAGCTTTGGGTTGTCTGGAAGACAGTTCCTAGAAA AGCCGCTTAGATGATTATTACGAGGGTGGCGCACGAAATGATGTTCGATC AAAGCGTACGGCGTGCCCTCTCTCTTCGAACCGACCTTATCATACACTTT CTACATACAACACAGGTACTACGGTTCCAAGCTTAAAACAAACGCCGACC TCAAGACTACTGCTTGTTGTACCGCCACCGTTCCTAAGAAGCTCCGAAGA CTCCTCAAAGATGTGCACGACGAAGTTCTCGAAAAGTTTTACGGGTGCGG CAGCCCTCTGCCTGAGGGCCTGGAGGGATGCACGGTGCTGGATATTGGCT CCGGCTCGGGCCGGGATTGCTTCGTTGCCTCACAGCTTGTAGGTCCGAAC GGCACGGTGATCGGCGTGGACATGACGGACGAGCAGCTCGCCGTCGCCCG CGCCCACGTGGATTGGCACATGCAACGCTACGGGTACAGCAAGCCCAATG TCACTTTCCTCAAAGGCGTCATCGAAGACTTACTTTCCGTGGGGATCCAA GACGCGACTGTGGACGTATGCGTCAGCAATTGTGTGTTGAACCTCTCCCC GAACAAGCCTCAAGTTTTATCAGAGATTTTCAGGGTGCTGAAGCCAGGGG GCGAGTTGTACTTTTCCGATGTTTTTTGCGATCGGCGCTTGCCGGCGGCT TTAAAGGGGGATCAAGAGGTTCTGGGAGAGTGTCTAGGTGGGGCGTTGTA TATTGAGGATTTCCGTCGCCTCCTTGTTGACTTAGGCTGCAAAGACTTCC GGGTCATGGACAAGGCAGAGATCCAAGTGACCGACGAGGGCATAGCGGCT AAAGTGGGCCTTGCCCGATTTCATTCCCTGACGTTGCGTTGTTTCAAGCT GCCGGGGCTTGAGGACCGGTGTGAGGAGTTCGGACAGTTTGCGACGTACA AGGGGACGATGACGGGGATGCCGGTGGCGTTTGACTTGGACGACTCGCAC CGGTTTGAGACGGGGCGGGCGGTGGCTGTGTGTGGGAATACGGCCTTGAT GCTAACCGACACGCGCTTCGCCCCGCACTTTAAGGTGGTGGGAGATACGT CGGTGCATTACGGCCTCTTTCAGGGGTCGGGTGTGTGTGCCCCCCCTCCT GAAGAGTCATCGAACAGCAAATTTGGAGCGTGTTGTTGAGCGAGGGAGAA GGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAATGGCTTAACTGAAGGGA TCGAGGAAATCCGAGCAAGTAATTTGTGGGTAGAAAACGTTTTAAAAAAA ATGACAGGAAGGATTTAAAGAAATGAATGAAACAAACAAATATGTTAAAC AA back to topprotein sequence of NO12G01860.2 >NO12G01860.2-protein ID=NO12G01860.2-protein|Name=NO12G01860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp MTDEQLAVARAHVDWHMQRYGYSKPNVTFLKGVIEDLLSVGIQDATVDVC VSNCVLNLSPNKPQVLSEIFRVLKPGGELYFSDVFCDRRLPAALKGDQEV LGECLGGALYIEDFRRLLVDLGCKDFRVMDKAEIQVTDEGIAAKVGLARF HSLTLRCFKLPGLEDRCEEFGQFATYKGTMTGMPVAFDLDDSHRFETGRA VAVCGNTALMLTDTRFAPHFKVVGDTSVHYGLFQGSGVCAPPPEESSNSK FGACC* back to topmRNA from alignment at chr12:535569..537521- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01860.2 ID=NO12G01860.2|Name=NO12G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at chr12:535569..537521- (Nannochloropsis oceanica) AGGGTCCAAATTATCTGTCCCTAGCAGCCATGTCATTATCGGTGGCCGCG
GAGGCGAATGGTATCAAGGAGAACGTCATAGAGTAAGTGCTATCTTATCG
TCGTCAACATCCCCTCCACCACCCTCTCCTCATAGTGAATAGTGAACAGG
AGTATGACGGTAGTGTAGCTTTGGGTTGTCTGGAAGACAGTTCCTAGAAA
AGCCGCTTAGATGATTATTACGAGGGTGGCGCACGAAATGATGTTCGATC
AAAGCGTACGGCGTGCCCTCTCTCTTCGAACCGACCTTATCATACACTTT
CTACATACAACACAGGTACTACGGTTCCAAGCTTAAAACAAACGCCGACC
TCAAGACTACTGCTTGTTGTACCGCCACCGTTCCTAAGAAGCTCCGAAGA
CTCCTCAAAGATGTGCACGACGAAGTTCTCGAAAAGTTTTACGGGTGCGG
CAGCCCTCTGCCTGAGGGCCTGGAGGGATGCACGGTGCTGGATATTGGCT
CCGGCTCGGGCCGGGATTGCTTCGTTGGTACGTGTCTATTTCTTGATTGA
AGAATCAGGATTAGGAGGATCATGCGGTCGGTCGAGCACTCGGGGACGGA
AACGCATTCCGTGCGAGGGGATGTAGGTGACAGGCGGGATTGAGCATTTC
TTCTGCTTGCTATATGCGCGTCGTCCATCTTCCACATTTTTCTGCATCGT
TGCTTACTATCCTTGCCCTCCTTTCGTCATAGCCTCACAGCTTGTAGGTC
CGAACGGCACGGTGATCGGCGTGGACATGACGGACGAGCAGCTCGCCGTC
GCCCGCGCCCACGTGGATTGGCACATGCAACGCTACGGGTACAGCAAGCC
CAATGTCACTTTCCTCAAAGGCGTCATCGAAGACTTACTTTCCGTGGGGA
TCCAAGACGCGACTGTGGACGTATGCGTCAGCAATTGTGTGTTGAACCTC
TCCCCGAACAAGCCTCAAGTTTTATCAGAGATTTTCAGGGTGCTGAAGCC
AGGGGGCGAGTTGTACTTTTCCGATGTTTTTTGCGATCGGCGCTTGCCGG
CGGCTTTAAAGGGGGATCAAGAGGTTCTGGGAGAGTGTCTAGGTGGGGCG
TTGTATATTGGTACGTTGAGAGGGAGGGAGGGAGGGAGGGAGTAGAACCC
ATCACCTCACGCATCCGCCCTTCTCTCCCTCCGCACTTCCCTCCTTCCCT
CCCTCCCTTCCCCCTAAAAAGAGGATTTCCGTCGCCTCCTTGTTGACTTA
GGCTGCAAAGACTTCCGGGTCATGGACAAGGCAGAGATCCAAGTGACCGA
CGAGGGCATAGCGGCTAAAGTGGGCCTTGCCCGATTTCATTCCCTGACGT
TGCGTTGTTTCAAGCTGCCGGGGCTTGAGGACCGGTGTGAGGAGTTCGGA
CAGTTTGCGACGTACAAGGGGACGATGACGGGGATGCCGGTGGCGTTTGA
CTTGGACGACTCGCACCGGTTTGAGACGGGGCGGGCGGTGGCTGTGTGTG
GGAATACGGCCTTGATGGTACGTGGATGAAGAGGGAGTGGTAGAGGGAGA
GAGTGTGGAGTGCTTGTGATGTGAGTCGCCAACTTGTGTACATGCATTTG
TGCCATCAACCTGGTCTTGCTCTAAATTAACTCCCCTTTCTCCCCCGTAC
AGCTAACCGACACGCGCTTCGCCCCGCACTTTAAGGTGGTGGGAGATACG
TCGGTGCATTACGGCCTCTTTCAGGGGTCGGGTGTGTGTGCCCCCCCTCC
TGAAGAGTCATCGAACAGCAAATTTGGAGCGTGTTGTTGAGCGAGGGAGA
AGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAATGGCTTAACTGAAGGG
ATCGAGGAAATCCGAGCAAGTAATTTGTGGGTAGAAAACGTTTTAAAAAA
AATGACAGGAAGGATTTAAAGAAATGAATGAAACAAACAAATATGTTAAA
CAA back to topCoding sequence (CDS) from alignment at chr12:535569..537521- >NO12G01860.2 ID=NO12G01860.2|Name=NO12G01860.2|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr12:535569..537521- (Nannochloropsis oceanica) ATGACGGACGAGCAGCTCGCCGTCGCCCGCGCCCACGTGGATTGGCACAT GCAACGCTACGGGTACAGCAAGCCCAATGTCACTTTCCTCAAAGGCGTCA TCGAAGACTTACTTTCCGTGGGGATCCAAGACGCGACTGTGGACGTATGC GTCAGCAATTGTGTGTTGAACCTCTCCCCGAACAAGCCTCAAGTTTTATC AGAGATTTTCAGGGTGCTGAAGCCAGGGGGCGAGTTGTACTTTTCCGATG TTTTTTGCGATCGGCGCTTGCCGGCGGCTTTAAAGGGGGATCAAGAGGTT CTGGGAGAGTGTCTAGGTGGGGCGTTGTATATTGAGGATTTCCGTCGCCT CCTTGTTGACTTAGGCTGCAAAGACTTCCGGGTCATGGACAAGGCAGAGA TCCAAGTGACCGACGAGGGCATAGCGGCTAAAGTGGGCCTTGCCCGATTT CATTCCCTGACGTTGCGTTGTTTCAAGCTGCCGGGGCTTGAGGACCGGTG TGAGGAGTTCGGACAGTTTGCGACGTACAAGGGGACGATGACGGGGATGC CGGTGGCGTTTGACTTGGACGACTCGCACCGGTTTGAGACGGGGCGGGCG GTGGCTGTGTGTGGGAATACGGCCTTGATGCTAACCGACACGCGCTTCGC CCCGCACTTTAAGGTGGTGGGAGATACGTCGGTGCATTACGGCCTCTTTC AGGGGTCGGGTGTGTGTGCCCCCCCTCCTGAAGAGTCATCGAACAGCAAA TTTGGAGCGTGTTGTTGA back to top
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