NO12G01430.1, NO12G01430.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G01430.1
Unique Name	NO12G01430.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3910
Alignment location	chr12:442113..447347 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:442113..447347 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO12G01430.1 vs.
Match: EWM25876.1 (atp dependent rna helicase [Nannochloropsis gaditana])

HSP 1 Score: 982.6 bits (2539), Expect = 6.400e-283
Identity = 547/652 (83.90%), Postives = 575/652 (88.19%), Query Frame = 0

Query:    1 MQHG-RYVPPALRGAASGDDSTA---SVPSIHADGGAGDTSHENGHNDIPDAIHPAAGAHQRQQQPLRYPHSLHPQQPNMGDYRSGAPPPSYGG-GGGYG--GGGYGGGGGYGGGGGRGGSRGGWDQGGGSYGRGGGGGYRGGNGGGGYSGSARVNAQGFHGDERPNKQLEDQLFRKPHAQTTGINFDKYDDIPVETSGEGCPEPITSFTEEMVGAQMMTNLAFCNYTKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPQGGRNTGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLMERDRISLQSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDARQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHFLVTFLSQCDDSGLILIFVERKRDADYLEGVLYKQGFPSASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMAYS-GGGGGGRKPRGGGRGGARFGARDFRKDRGGGGGDGYDRGGRGGGYQGGYGSG 645
            MQHG +YVPPALRG +  ++      S+  + A G     S    +++  +AIHP +GAHQR QQ   YP +  P  P MGDYR      SYGG GGGYG  GGGYG GG   GGGGR      +D GGG YGR GGG YRGGN G GY G  RVN+QGFHGD RP+K+LE+QLFR+PHAQTTGINFDKYDDIPVETSGEGCPEPI SFTE+MVG Q+MTNLA CNY+KPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPP+GGR++GRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDL+ERDRISL SIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTD RQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIH+LVTFLSQCDDSGLILIFVERKRDADYLEG+LYKQGFP ASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMAYS GGGGGGR+PRGGGRGGARFGARDFRKDR  GGGDGYDR GRGGGY GGYG G
Sbjct:   18 MQHGGKYVPPALRGESGAENDETPPTSLTEVKAGGMDHSESSSANNHEPSEAIHPTSGAHQRHQQMPPYPQNTPPSGP-MGDYRGS----SYGGGGGGYGNQGGGYGYGG--RGGGGR------FDGGGGGYGR-GGGAYRGGN-GRGYGGGGRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTD-RQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMAYSGGGGGGGRRPRGGGRGGARFGARDFRKDR--GGGDGYDR-GRGGGYGGGYGGG 650

The following BLAST results are available for this feature:

BLAST of NO12G01430.1 vs.

BLAST of NO12G01430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25876.1	6.400e-283	83.90	atp dependent rna helicase [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G01430	NO12G01430	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G01430.1	NO12G01430.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G01430.1.cds1	NO12G01430.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01430.1.cds2	NO12G01430.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01430.1.cds3	NO12G01430.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01430.1.cds4	NO12G01430.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01430.1.cds5	NO12G01430.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01430.1.cds6	NO12G01430.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:442113..447347-
coding sequence from alignment at chr12:442113..447347-

mRNA sequence

>NO12G01430.1 ID=NO12G01430.1|Name=NO12G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=3910bp
CAGGAAAGACAATTAGGCTATAAGAGGCAAGTCCTGCGATGCAACATGGT
AGGTACGTTCCCCCGGCTTTAAGAGGAGCAGCGAGTGGTGACGACAGTAC
GGCTTCTGTGCCTTCCATCCACGCAGACGGAGGAGCAGGTGACACCAGCC
ACGAGAACGGCCACAACGACATCCCCGACGCGATCCACCCGGCGGCAGGT
GCGCACCAGCGACAGCAGCAGCCTCTGCGCTACCCCCACAGCTTGCACCC
GCAACAACCTAACATGGGAGATTATCGAAGTGGTGCCCCCCCCCCTTCCT
ATGGCGGAGGAGGAGGGTATGGTGGAGGAGGATATGGTGGAGGAGGAGGA
TATGGAGGGGGAGGAGGGCGAGGGGGAAGTCGAGGTGGCTGGGATCAAGG
AGGAGGGTCGTATGGTCGTGGAGGAGGAGGAGGGTATCGAGGTGGGAATG
GAGGGGGGGGCTACTCGGGGTCTGCGCGAGTGAATGCGCAGGGATTTCAC
GGGGACGAGCGCCCGAACAAGCAGTTGGAGGACCAGCTGTTCCGCAAGCC
GCACGCGCAGACTACAGGGATTAATTTCGATAAATATGACGATATTCCCG
TGGAGACGAGTGGGGAAGGGTGCCCGGAACCGATCACGAGTTTTACTGAG
GAGATGGTTGGGGCGCAGATGATGACGAATTTGGCGTTTTGCAACTACAC
CAAGCCCACGCCCGTGCAGAAGTATTCAGTTCCCATTGGATTGGCGGATC
GGGACTTGATGGCTTGTGCCCAGACGGGGTCGGGGAAGACGGCGGGGTTT
TTGTTTCCTACAATCGTGTCCATGTTGCGACAGGGTGCACCGGAGCCACC
GCAGGGGGGGCGGAATACGGGAAGGAAGGTGTACCCCATGGCGCTTGTGC
TTGCACCGACGCGGGAGTTGGCAAGCCAGATTTTCGATGAGGCGCAAAAG
TTTTGTTACTGTACGGGGGTGAGGCCTGTCGTGATTTACGGAGGGGCGGA
GGTGAGGAATCAGTTGAGGGAGCTGGAACGGGGGTGTGACTTACTCGTGG
CGACGCCTGGGAGGTTGGTAGACCTGATGGAGCGGGACCGGATCAGCCTG
CAGAGCATTCGATTCCTGATCCTGGATGAGGCGGATCGCATGCTTGACAT
GGGCTTTGAGCCGCAGATCCGGAGGATTGTGGAGCAGGAAGGTATGCCGA
CGGACGCCAGGCAGACCTTCATGTTCAGTGCGACGTTTCCCCGGGATATT
CAACGGCTGGCGGCTGATTTCATGAAGGATTACATTTTCCTGGCGGTGGG
GAGGGTGGGGTCGGCGAGTAAGGATGTGATCCAAAAGATTGAGTACGTGG
AGATGCACGACAAGATCCATTTCCTTGTCACATTTTTGAGCCAGTGCGAC
GATTCGGGCCTGATTCTGATTTTCGTGGAGCGGAAGCGCGATGCGGATTA
TCTTGAGGGCGTGTTGTATAAGCAGGGCTTTCCATCGGCGAGTATCCATG
GGGACAAGACGCAGAGGGAGCGGGAGGAGGCGTTGCACTACTTTAAAACT
GGCCAGTGCCCTGTGCTCGTCGCCACAGACGTCGCGGCCCGTGGGCTGGA
CATCTCCAACGTGACTCAGGTGATCAACTACGACCTCCCTAACAATATCG
ACGACTACGTGCACCGCATCGGACGTACCGGCCGTGTCGGCAACGTCGGG
CACGCCCTGTCGTTGATGAACGAGAAGAACAAGAACATTGCGCGGGAGCT
CTTTGATCTGCTCTCGGAGAATGGGCATGATATCCCCCGGTTCTTGGAGG
ACATGGCTTATTCTGGCGGAGGGGGCGGAGGGCGCAAGCCGCGAGGGGGA
GGAAGGGGAGGAGCGCGCTTCGGAGCGAGGGATTTCCGAAAAGACCGGGG
AGGTGGGGGAGGAGACGGCTACGATCGTGGAGGACGGGGGGGGGGTTATC
AGGGGGGGTATGGCAGTGGAGGTGGAGGATATGGCGGCCAAGGTGGTGGT
TATAGCGGTGGCGGCGGAGGATATGGTGGAGGAGGGGGTTACTCCCAATC
CTCCGGCTATGGCGGCGGTGGTGGCAGCTATGGCGGCGGTGGCGGCTACG
GCGGCCCCCCCGCGACCGGGTATGGTGGCCCGCCCTCCCGCGGCGGGGGA
GGAGGGTATTCAGGTCCCCCTTCCTACGGCCGTCCGCCTTCTGATAATAG
TGCCTGGTAAGGTGGAAAGGAGAAGGAGGAGATGGTGCAGAATGATACGG
AGATGGAGGAGGAGGAGGAAGAAGAGAAGGAAGAGGAGGAATGAAATTGA
GAAGGGTAGAGACATAATAGGGCTCAAGACTAAGAACAAGAAGTAGGGGG
AAAATAAGACAAAGGAACCAAAAAGAGAGGGAGAGGAAGACAAGAGGAAG
GCAAAGGAGGAGAAAGCAGAAGAGGGACAGAGAAGAAAGCTCTTGCAGCA
CCACCATCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGT
AGTAGTACCAGCAGCTGTGGCAGGTCGAAGTAGAAAGAAAAGGGTAAAGA
CGAGAAGATGGAAGTTTTCATGATTTTGATTTGTCTGTGAAAGGTGTGTG
CTTACCATCAGTATTCGCCGGCGCCGTAAGAGAAATAGAGAAGGCAAGAG
AAAACGAAGGAGGGAGAAGGGAGGGTTATGAGATCACGAGCGAAACCTCA
CTCATTTTTTTAATCGTGAAATCTAATGCAAGTCCCGGAATACAGAGCTT
TCGGGGCCGAGAGCGCTGTTATCGAGACATAGAGTGTGAGAGTGAGAGAG
TGGAAAATATTAAGTAATGCTAGGTAGCAAGTGGTAGGTGCATCGCGTAA
AATTGCCTGCCTTCGTGGTCTTTTTAAATCATTAATCTGTCTCTCTTTCT
GGCCGGCTGACGGTCGATTACCTGTCTATTTCTCTTCATATAGGGTGTAA
CGGTAGATGTGTCTGGCCACATGCGTGCGTGTGTGTGTGTTTTTGGAGTG
TCAAGTAATCGATAGAGAGCAAGTAGCTAGTGCATACAAACTCTCTTGAT
AGGAGAACAAACGTTTCTAAAGGGGAAAGGGCATTTGCTTGTTTGGCTGC
TGTTGTCATGGGCACCCGCCTATTTCTTAGGGGTCTTTCACAACGATGGT
GTACTGTTGGAGATCCTCCCGAGGCCGCCTTTCGTTTTGTGGTTTTTGTT
TTTCTTCACGTGCTTGCTGAAAAGCAAGCACGTGAGAGAAAAAACATATG
GATCAACAGGAGACATTAATGAACGAAGACGGTTTAAATGATGAGGAAGG
AATAGCAACAAGAACAAGAGAGAAGGCTGATCCGCCGGCCTCCCTCCCTC
CGTACTCCCCACCTCCGTGAAAGAAAGACGGAATAGGGATAAGAGAGGGG
TGTGAGGGGGGAAGAAGATGAAGAAGACGAAGAAGACGGTGATTAGACAC
AAACGTTTGTATGATACAGTAGCACGACAAACACAGACGCCTAACAAAAT
GAGGTAAGAAATACGCGAATAGAGAAAGAGATAAGAGTAAGGACATGAAG
ATGTAGTTTTTGCGCAGTCCGAGGCAGATGGCACTCACGAGAGGAGCTTA
ATTCTATAAGGTGCACCTTTTCGCCGCTCTCAAAGAGCCTCACAAAAATC
ACACGCACCCTCCGCGCTCCTCCCCTGTTTCTTCCCTTCGCTTTGGGTTG
AGAGGGGAGATAGAGAGGAGGGTTGGAGAGAGGGAAAGAAATGGAAGGGA
GAAAGTGAGCGTGGCTGACTCTCCATTTCCTCCCCTTTTTGAATCAAGAC
TTGAGGCTCCGGGCATTAGGTGTGAAGGGCGATTTATCTCCTTATCACCG
CAAGAAATATCAAGGGAGAGGAAAGACACGCTACATATACGATACGAGGC
TGATGACGAC

protein sequence of NO12G01430.1

>NO12G01430.1-protein ID=NO12G01430.1-protein|Name=NO12G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=724bp
MQHGRYVPPALRGAASGDDSTASVPSIHADGGAGDTSHENGHNDIPDAIH
PAAGAHQRQQQPLRYPHSLHPQQPNMGDYRSGAPPPSYGGGGGYGGGGYG
GGGGYGGGGGRGGSRGGWDQGGGSYGRGGGGGYRGGNGGGGYSGSARVNA
QGFHGDERPNKQLEDQLFRKPHAQTTGINFDKYDDIPVETSGEGCPEPIT
SFTEEMVGAQMMTNLAFCNYTKPTPVQKYSVPIGLADRDLMACAQTGSGK
TAGFLFPTIVSMLRQGAPEPPQGGRNTGRKVYPMALVLAPTRELASQIFD
EAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLMERD
RISLQSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDARQTFMFSATF
PRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHFLVTFL
SQCDDSGLILIFVERKRDADYLEGVLYKQGFPSASIHGDKTQREREEALH
YFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRV
GNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMAYSGGGGGGRK
PRGGGRGGARFGARDFRKDRGGGGGDGYDRGGRGGGYQGGYGSGGGGYGG
QGGGYSGGGGGYGGGGGYSQSSGYGGGGGSYGGGGGYGGPPATGYGGPPS
RGGGGGYSGPPSYGRPPSDNSAW*

mRNA from alignment at chr12:442113..447347-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G01430.1 ID=NO12G01430.1|Name=NO12G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=5235bp|location=Sequence derived from alignment at chr12:442113..447347- (Nannochloropsis oceanica)
CAGGAAAGACAATTAGGCTATAAGAGGCAAGTCCTGCGATGCAACATGGT
AAGTGTATAACCGTGCCTAAGCTGATGTACGCCTCCATTTTTCTACCGCC
TACCCTTTTATTGCTTTGGTGTATGTGCGCGGTCTTGCACGATACAAGAT
GATGAAAGGGTAGTTGGCTATACATTTGAAATTCATTGTGCTTTTTCGAC
AGCTAACGCCCCTTGTATGTGCTAGGGGCGAAAAGCATTTCACCAAAGGG
AGCAGCACTAGGGACGCGCGGTTATGTGAGGCATGACGCTAGCGTTGTAT
TGGGTGGATAAATCACAATGTGTACATGTGTGGGCAATTGTGCCTGCCCT
AGGGGGGATGATAAGCTTGGAGGCATGGCTTGTTATGGTGGGAGAGAAAT
AGATGGGCAGTGGTACCAGAGCAGCACCTCCCTCATCGATTACACCGCGC
CCAGCGAAAGTCTTGATAACAATGCATTCGCTTATCCCTTCCTCTTCCTC
TATCCTCACGCACGCAAAGGTAGGTACGTTCCCCCGGCTTTAAGAGGAGC
AGCGAGTGGTGACGACAGTACGGCTTCTGTGCCTTCCATCCACGCAGACG
GAGGAGCAGGTGACACCAGCCACGAGAACGGCCACAACGACATCCCCGAC
GCGATCCACCCGGCGGCAGGTGCGCACCAGCGACAGCAGCAGCCTCTGCG
CTACCCCCACAGCTTGCACCCGCAACAACCTAACATGGGAGATTATCGAA
GTGGTGCCCCCCCCCCTTCCTATGGCGGAGGAGGAGGGTATGGTGGAGGA
GGATATGGTGGAGGAGGAGGATATGGAGGGGGAGGAGGGCGAGGGGGAAG
TCGAGGTGGCTGGGATCAAGGAGGAGGGTCGTATGGTCGTGGAGGAGGAG
GAGGGTATCGAGGTGGGAATGGAGGGGGGGGCTACTCGGGGTCTGCGCGA
GTGAATGCGCAGGGATTTCACGGGGACGAGCGCCCGAACAAGCAGTTGGA
GGACCAGCTGTTCCGCAAGCCGCACGCGCAGACTACAGGGATTAATTTCG
ATAAATATGACGATATTCCCGTGGAGACGAGTGGGGAAGGGTGCCCGGAA
CCGATCACGAGTTTTACTGAGGAGATGGTTGGGGCGCAGATGATGACGAA
TTTGGCGTTTTGCAACTACACCAAGCCCACGCCCGTGCAGAAGTATTCAG
TTCCCATTGGATTGGCGGATCGGGACTTGATGGCTTGTGCCCAGACGGGG
TCGGGGAAGACGGCGGGGTTTTTGTTTCCTACAATCGTGTCCATGTTGCG
ACAGGGTGCACCGGAGCCACCGCAGGGGGGGCGGAATACGGGAAGGAAGG
TGTACCCCATGGCGCTTGTGCTTGCACCGACGCGGGAGTTGGCAAGCCAG
ATTTTCGATGAGGCGCAAAAGTTTTGTTACTGTACGGGGGTGAGGCCTGT
CGTGATTTACGGAGGGGCGGAGGTGAGGAATCAGTTGAGGGAGCTGGAAC
GGGGGTGTGACTTACTCGTGGCGACGCCTGGGAGGTTGGTAGACCTGATG
GAGCGGGACCGGATCAGCCTGCAGAGCATTCGATTCCTGATCCTGGATGA
GGCGGATCGCATGCTTGACATGGGCTTTGAGCCGCAGATCCGGAGGATTG
TGGAGCAGGAAGGTATGCCGACGGACGCCAGGCAGACCTTCATGTTCAGT
GCGACGTTTCCCCGGGATATTCAACGGCTGGCGGCTGATTTCATGAAGGA
TTACATTTTCCTGGCGGTGGGGAGGGTGGGGTCGGCGAGTAAGGATGTGA
TCCAAAAGATTGAGTACGTGGAGATGCACGACAAGATCCATTTCCTTGTC
ACATTTTTGAGCCAGTGCGACGATTCGGGCCTGATTCTGATTTTCGTGGA
GCGGAAGCGCGATGCGGATTATCTTGAGGGCGTGTTGTATAAGCAGGGCT
TTCCATCGGCGAGTATCCATGGGGACAAGACGCAGAGGGAGCGGGAGGAG
GCGTTGCACTACTTTAAAACTGGTACGTAGTGGCTTTGGGTCTGGGGATA
TGTGTGTACGTGTGTATCTATGTCGGTATCGTCCCTTATTTGTATGCATG
CACGCTTGGAGAGTGCATGTCGTCCTTCCCGCCGCGCCGTCTCACCCTCC
CTCCCTCCCTCCTTCCCCCCCCCCCCCTTTCGAAACACACAGGCCAGTGC
CCTGTGCTCGTCGCCACAGACGTCGCGGCCCGTGGGCTGGACATCTCCAA
CGTGACTCAGGTGATCAACTACGACCTCCCTAACAATATCGACGACTACG
TGCACCGCATCGGACGTACCGGCCGTGTCGGCAACGTCGGGCACGCCCTG
TCGTTGATGAACGAGAAGAACAAGAACATTGCGCGGGAGCTCTTTGATCT
GCTCTCGGAGAATGGGCATGATATCCCCCGGTTCTTGGAGGACATGGCTT
ATTCTGGCGGAGGGGGCGGAGGGCGCAAGCCGCGAGGGGGAGGAAGGGGA
GGAGCGCGCTTCGGAGCGAGGGATTTCCGAAAAGACCGGGGAGGTGGGGG
AGGAGACGGCTACGATCGTGGAGGACGGGGGGGGGGTTATCAGGGGGGGT
ATGGCAGTGGAGGTGGAGGGTGAGTAGTGTTCAAGGAAACATAGATGGGG
GAAGGGTGGCTCAGAGGGATGGGGAGAGGTAACAGAGGTATTAACTTGGT
TCCCCTTTTCTTCTTATGGGTTCGGTTTCTTGTTTGTGATTTCTGTTTCC
TCCTCCCTTACCTCTCTACTTTTGACTCGATTTCTTATGGCTCAATCCTA
CTTCCTCCTCCGATCCTCACTCGTCCTCGATTCACAGATATGGCGGCCAA
GGTGGTGGTTATAGCGGTGGCGGCGGAGGGTAAGTGCATCGCTCCCTAAT
TTCACCTCCCCCTCTTTCCCTCACATGAATTATTTCCATTTGTGGTATGA
CTGATGGGTCCGTTTTCATACGAGCCCTCTGTCGCTCACCCCCTTCTCTC
TTCGGTCACACACACAATCATACACAACACACGCACGCCCATAAAGATAT
GGTGGAGGAGGGGGTTACTCCCAATCCTCCGGCTATGGCGGCGGTGGTGG
CAGGTGCGTGCATGAGGGCGTTCGTGCCTGCTTGCGCGTGTTTTTTTCCG
CTTTACTTTTACTTTAAATGTTTCGCGTGCTTTGATGCTATTTGTCTGGA
TTTTTTTGTGTACAGCGAGTCATCTTTCCTTGTCCGTTTGACATTCTGTC
CAATTATTTGTGCTTTGATAATATTATCACCCAGTGCTTTTCCTCGATCT
TTGCCATCCCCCCCCCCCCCTGTCCGTCTCGTTTCTCAATCCTCACACCC
ACTTATGTTCTTCCCCCCCCATTCCTCTCTCCCTCAAACGAAACCAAAAT
AGCTATGGCGGCGGTGGCGGCTACGGCGGCCCCCCCGCGACCGGGTATGG
TGGCCCGCCCTCCCGCGGCGGGGGAGGAGGGTATTCAGGTCCCCCTTCCT
ACGGCCGTCCGCCTTCTGATAATAGTGCCTGGTAAGGTGGAAAGGAGAAG
GAGGAGATGGTGCAGAATGATACGGAGATGGAGGAGGAGGAGGAAGAAGA
GAAGGAAGAGGAGGAATGAAATTGAGAAGGGTAGAGACATAATAGGGCTC
AAGACTAAGAACAAGAAGTAGGGGGAAAATAAGACAAAGGAACCAAAAAG
AGAGGGAGAGGAAGACAAGAGGAAGGCAAAGGAGGAGAAAGCAGAAGAGG
GACAGAGAAGAAAGCTCTTGCAGCACCACCATCACCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTACCAGCAGCTGTGGCAGGT
CGAAGTAGAAAGAAAAGGGTAAAGACGAGAAGATGGAAGTTTTCATGATT
TTGATTTGTCTGTGAAAGGTGTGTGCTTACCATCAGTATTCGCCGGCGCC
GTAAGAGAAATAGAGAAGGCAAGAGAAAACGAAGGAGGGAGAAGGGAGGG
TTATGAGATCACGAGCGAAACCTCACTCATTTTTTTAATCGTGAAATCTA
ATGCAAGTCCCGGAATACAGAGCTTTCGGGGCCGAGAGCGCTGTTATCGA
GACATAGAGTGTGAGAGTGAGAGAGTGGAAAATATTAAGTAATGCTAGGT
AGCAAGTGGTAGGTGCATCGCGTAAAATTGCCTGCCTTCGTGGTCTTTTT
AAATCATTAATCTGTCTCTCTTTCTGGCCGGCTGACGGTCGATTACCTGT
CTATTTCTCTTCATATAGGGTGTAACGGTAGATGTGTCTGGCCACATGCG
TGCGTGTGTGTGTGTTTTTGGAGTGTCAAGTAATCGATAGAGAGCAAGTA
GCTAGTGCATACAAACTCTCTTGATAGGAGAACAAACGTTTCTAAAGGGG
AAAGGGCATTTGCTTGTTTGGCTGCTGTTGTCATGGGCACCCGCCTATTT
CTTAGGGGTCTTTCACAACGATGGTGTACTGTTGGAGATCCTCCCGAGGC
CGCCTTTCGTTTTGTGGTTTTTGTTTTTCTTCACGTGCTTGCTGAAAAGC
AAGCACGTGAGAGAAAAAACATATGGATCAACAGGAGACATTAATGAACG
AAGACGGTTTAAATGATGAGGAAGGAATAGCAACAAGAACAAGAGAGAAG
GCTGATCCGCCGGCCTCCCTCCCTCCGTACTCCCCACCTCCGTGAAAGAA
AGACGGAATAGGGATAAGAGAGGGGTGTGAGGGGGGAAGAAGATGAAGAA
GACGAAGAAGACGGTGATTAGACACAAACGTTTGTATGATACAGTAGCAC
GACAAACACAGACGCCTAACAAAATGAGGTAAGAAATACGCGAATAGAGA
AAGAGATAAGAGTAAGGACATGAAGATGTAGTTTTTGCGCAGTCCGAGGC
AGATGGCACTCACGAGAGGAGCTTAATTCTATAAGGTGCACCTTTTCGCC
GCTCTCAAAGAGCCTCACAAAAATCACACGCACCCTCCGCGCTCCTCCCC
TGTTTCTTCCCTTCGCTTTGGGTTGAGAGGGGAGATAGAGAGGAGGGTTG
GAGAGAGGGAAAGAAATGGAAGGGAGAAAGTGAGCGTGGCTGACTCTCCA
TTTCCTCCCCTTTTTGAATCAAGACTTGAGGCTCCGGGCATTAGGTGTGA
AGGGCGATTTATCTCCTTATCACCGCAAGAAATATCAAGGGAGAGGAAAG
ACACGCTACATATACGATACGAGGCTGATGACGAC

Coding sequence (CDS) from alignment at chr12:442113..447347-

>NO12G01430.1 ID=NO12G01430.1|Name=NO12G01430.1|organism=Nannochloropsis oceanica|type=CDS|length=2172bp|location=Sequence derived from alignment at chr12:442113..447347- (Nannochloropsis oceanica)
ATGCAACATGGTAGGTACGTTCCCCCGGCTTTAAGAGGAGCAGCGAGTGG
TGACGACAGTACGGCTTCTGTGCCTTCCATCCACGCAGACGGAGGAGCAG
GTGACACCAGCCACGAGAACGGCCACAACGACATCCCCGACGCGATCCAC
CCGGCGGCAGGTGCGCACCAGCGACAGCAGCAGCCTCTGCGCTACCCCCA
CAGCTTGCACCCGCAACAACCTAACATGGGAGATTATCGAAGTGGTGCCC
CCCCCCCTTCCTATGGCGGAGGAGGAGGGTATGGTGGAGGAGGATATGGT
GGAGGAGGAGGATATGGAGGGGGAGGAGGGCGAGGGGGAAGTCGAGGTGG
CTGGGATCAAGGAGGAGGGTCGTATGGTCGTGGAGGAGGAGGAGGGTATC
GAGGTGGGAATGGAGGGGGGGGCTACTCGGGGTCTGCGCGAGTGAATGCG
CAGGGATTTCACGGGGACGAGCGCCCGAACAAGCAGTTGGAGGACCAGCT
GTTCCGCAAGCCGCACGCGCAGACTACAGGGATTAATTTCGATAAATATG
ACGATATTCCCGTGGAGACGAGTGGGGAAGGGTGCCCGGAACCGATCACG
AGTTTTACTGAGGAGATGGTTGGGGCGCAGATGATGACGAATTTGGCGTT
TTGCAACTACACCAAGCCCACGCCCGTGCAGAAGTATTCAGTTCCCATTG
GATTGGCGGATCGGGACTTGATGGCTTGTGCCCAGACGGGGTCGGGGAAG
ACGGCGGGGTTTTTGTTTCCTACAATCGTGTCCATGTTGCGACAGGGTGC
ACCGGAGCCACCGCAGGGGGGGCGGAATACGGGAAGGAAGGTGTACCCCA
TGGCGCTTGTGCTTGCACCGACGCGGGAGTTGGCAAGCCAGATTTTCGAT
GAGGCGCAAAAGTTTTGTTACTGTACGGGGGTGAGGCCTGTCGTGATTTA
CGGAGGGGCGGAGGTGAGGAATCAGTTGAGGGAGCTGGAACGGGGGTGTG
ACTTACTCGTGGCGACGCCTGGGAGGTTGGTAGACCTGATGGAGCGGGAC
CGGATCAGCCTGCAGAGCATTCGATTCCTGATCCTGGATGAGGCGGATCG
CATGCTTGACATGGGCTTTGAGCCGCAGATCCGGAGGATTGTGGAGCAGG
AAGGTATGCCGACGGACGCCAGGCAGACCTTCATGTTCAGTGCGACGTTT
CCCCGGGATATTCAACGGCTGGCGGCTGATTTCATGAAGGATTACATTTT
CCTGGCGGTGGGGAGGGTGGGGTCGGCGAGTAAGGATGTGATCCAAAAGA
TTGAGTACGTGGAGATGCACGACAAGATCCATTTCCTTGTCACATTTTTG
AGCCAGTGCGACGATTCGGGCCTGATTCTGATTTTCGTGGAGCGGAAGCG
CGATGCGGATTATCTTGAGGGCGTGTTGTATAAGCAGGGCTTTCCATCGG
CGAGTATCCATGGGGACAAGACGCAGAGGGAGCGGGAGGAGGCGTTGCAC
TACTTTAAAACTGGCCAGTGCCCTGTGCTCGTCGCCACAGACGTCGCGGC
CCGTGGGCTGGACATCTCCAACGTGACTCAGGTGATCAACTACGACCTCC
CTAACAATATCGACGACTACGTGCACCGCATCGGACGTACCGGCCGTGTC
GGCAACGTCGGGCACGCCCTGTCGTTGATGAACGAGAAGAACAAGAACAT
TGCGCGGGAGCTCTTTGATCTGCTCTCGGAGAATGGGCATGATATCCCCC
GGTTCTTGGAGGACATGGCTTATTCTGGCGGAGGGGGCGGAGGGCGCAAG
CCGCGAGGGGGAGGAAGGGGAGGAGCGCGCTTCGGAGCGAGGGATTTCCG
AAAAGACCGGGGAGGTGGGGGAGGAGACGGCTACGATCGTGGAGGACGGG
GGGGGGGTTATCAGGGGGGGTATGGCAGTGGAGGTGGAGGATATGGCGGC
CAAGGTGGTGGTTATAGCGGTGGCGGCGGAGGATATGGTGGAGGAGGGGG
TTACTCCCAATCCTCCGGCTATGGCGGCGGTGGTGGCAGCTATGGCGGCG
GTGGCGGCTACGGCGGCCCCCCCGCGACCGGGTATGGTGGCCCGCCCTCC
CGCGGCGGGGGAGGAGGGTATTCAGGTCCCCCTTCCTACGGCCGTCCGCC
TTCTGATAATAGTGCCTGGTAA

Synonyms

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