NO12G00470.1, NO12G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00470.1
Unique NameNO12G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1485
Alignment locationchr12:174318..175802 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:174318..175802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00470.1 vs.
Match: EWM25973.1 (peptide chain release factor 2 [Nannochloropsis gaditana])

HSP 1 Score: 545.0 bits (1403), Expect = 2.300e-151
Identity = 290/444 (65.32%), Postives = 341/444 (76.80%), Query Frame = 0 
Query:   46 LPLPTSSLFSCSSSSSSSSSSSTEPSAPIPRIRRARALMVSFSSASPSSPSSSSSSSLSFSSAPISDPGELKRLLIEAKASVQANTASLDLAKFEGEINYYEQEAAQEGFWSKPAKARAVLTKLTRLKGIVARVNGWEKMVEDAETALLLWEEEEGGESEVWGQEGREGLRKLMEDLERWEVERLLSGPYDGCGCRMLITAGVGGADASDWAGMLLRMYTRYGERKGWKVRVVEMSVPVEGFGVKSAMVEVEGDMAFGFLKAEKGTHRLVRISPFNSGGKRQTSFAGVETMPILSEEALEEVVIEEGDVEMTTSRAGGAGGQNVNKVETAVRLKHLPTGLVVRCQEERSQLLNRKKAMDMLKEKLLVVKEEQRVEELAEIRGDLVEASWGQQIRNYVLHPYKLVKDTRTERETVDVASVLEGGEGLDDFVGAYLRWRSKENVVE 490
            +P P   L S SS+S  +            R R  R    S +S+SPSS SS SSS LS +  PI DP ELKR L EA  +++ANTA+L+L K  GEI+Y EQEAAQE FW +P +AR  ++ L  L+G VARV+ W +  ED  TAL LWEE   G  E WG+EG+EG+R+L +DL  WEV++LLSGPYD CGCR+ ITAG GG DASDWAGMLLRMY RYGERKGWK+R++E  V  EG G+K A++EVEG+ A+G LKAE+GTHRLVRISPFN+ GKRQTSFAGVE MPILS+E LE+VV+ EG+VEMTT R+GGAGGQNVNKVETAVRLKHLPTGLV RCQEERSQ+LNRKKA  +LK KLL VKE QRVE LAEIRGDL+EASWGQQIRNYVLHPYKLVKDTR+ RET DV+ VL+GGE L+DF+GAYLR R+ E   E
Sbjct:  126 VPAPRHDLGSLSSASLRNG-----------RRRSRRMFSSSSASSSPSSSSSFSSSILSSAETPIQDPAELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEE---GGGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLRLRAAEGKEE 555
The following BLAST results are available for this feature:
BLAST of NO12G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25973.12.300e-15165.32peptide chain release factor 2 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00470NO12G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00470.1NO12G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00470.1.cds1NO12G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00470.1 ID=NO12G00470.1|Name=NO12G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1485bp
ATGACGGTCATAAGGCCTGGGGCAAGCAGTGGCCATGTAAGGAGCAGACG
GAGAAGACCAAGACCCTACGGCCTGCTTCCCCTCCTCCTTTCCGCATGCA
TCCTCCTGGAAGTGAGACCATGCAACGCCTTTTGCCTCCCTTTGCCAACG
TCCTCCCTCTTCTCTTGCAGCAGTAGCAGCAGCAGTAGCAGCAGCAGTAG
CACCGAGCCATCTGCGCCAATTCCTAGAATAAGAAGAGCGCGAGCACTGA
TGGTTTCCTTCTCCTCAGCCTCCCCATCCTCCCCCTCCTCCTCCTCATCC
TCCTCCCTCTCCTTCTCCTCCGCCCCCATCTCCGATCCCGGTGAGCTCAA
GCGCCTGCTAATTGAAGCCAAAGCTTCCGTCCAAGCGAACACCGCCTCCT
TAGACCTAGCTAAATTCGAAGGAGAAATCAATTATTACGAGCAAGAGGCC
GCCCAGGAAGGTTTCTGGAGCAAGCCGGCAAAAGCCCGGGCAGTTCTTAC
TAAATTAACGCGATTAAAAGGCATCGTGGCACGGGTGAATGGATGGGAGA
AAATGGTGGAGGATGCGGAGACGGCATTGTTGTTGTGGGAGGAGGAGGAA
GGGGGGGAGAGCGAGGTGTGGGGGCAGGAAGGGAGGGAGGGCTTGCGGAA
GTTGATGGAGGACTTGGAGAGGTGGGAAGTGGAGAGACTTTTATCTGGAC
CTTATGATGGATGTGGATGTCGTATGCTGATTACGGCAGGGGTGGGGGGG
GCAGATGCGAGTGATTGGGCAGGGATGCTTTTGCGGATGTACACGAGGTA
CGGGGAGAGGAAGGGGTGGAAGGTGAGGGTAGTTGAAATGAGCGTGCCGG
TGGAGGGTTTTGGGGTGAAGAGTGCGATGGTGGAGGTGGAGGGAGACATG
GCGTTTGGGTTTCTGAAGGCGGAGAAGGGGACGCATCGGCTGGTGAGAAT
CAGTCCGTTCAACAGTGGAGGCAAGAGGCAGACGAGTTTTGCAGGGGTTG
AGACCATGCCGATCTTGTCCGAGGAGGCGTTGGAGGAGGTGGTGATTGAG
GAGGGGGACGTGGAGATGACCACGTCAAGGGCTGGAGGGGCAGGGGGTCA
GAACGTTAACAAAGTCGAGACGGCCGTGCGGCTGAAGCATCTGCCGACGG
GCTTGGTTGTGAGGTGTCAGGAAGAACGTTCGCAGTTGCTGAACCGGAAG
AAGGCGATGGATATGTTGAAAGAGAAGCTGTTGGTGGTAAAGGAGGAGCA
GAGGGTGGAGGAGCTGGCGGAGATTAGAGGAGACCTAGTGGAGGCGAGCT
GGGGACAGCAGATCCGGAATTACGTTTTGCATCCTTATAAGCTGGTCAAA
GACACGCGGACGGAGAGGGAGACCGTGGATGTAGCGAGCGTCTTGGAGGG
GGGGGAGGGCCTGGATGACTTCGTGGGTGCGTATTTGCGGTGGAGGTCCA
AAGAAAATGTCGTAGAAACGTTGGTTGAAGGATAA
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protein sequence of NO12G00470.1

>NO12G00470.1-protein ID=NO12G00470.1-protein|Name=NO12G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MTVIRPGASSGHVRSRRRRPRPYGLLPLLLSACILLEVRPCNAFCLPLPT
SSLFSCSSSSSSSSSSSTEPSAPIPRIRRARALMVSFSSASPSSPSSSSS
SSLSFSSAPISDPGELKRLLIEAKASVQANTASLDLAKFEGEINYYEQEA
AQEGFWSKPAKARAVLTKLTRLKGIVARVNGWEKMVEDAETALLLWEEEE
GGESEVWGQEGREGLRKLMEDLERWEVERLLSGPYDGCGCRMLITAGVGG
ADASDWAGMLLRMYTRYGERKGWKVRVVEMSVPVEGFGVKSAMVEVEGDM
AFGFLKAEKGTHRLVRISPFNSGGKRQTSFAGVETMPILSEEALEEVVIE
EGDVEMTTSRAGGAGGQNVNKVETAVRLKHLPTGLVVRCQEERSQLLNRK
KAMDMLKEKLLVVKEEQRVEELAEIRGDLVEASWGQQIRNYVLHPYKLVK
DTRTERETVDVASVLEGGEGLDDFVGAYLRWRSKENVVETLVEG*
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mRNA from alignment at chr12:174318..175802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00470.1 ID=NO12G00470.1|Name=NO12G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1485bp|location=Sequence derived from alignment at chr12:174318..175802- (Nannochloropsis oceanica)
ATGACGGTCATAAGGCCTGGGGCAAGCAGTGGCCATGTAAGGAGCAGACG
GAGAAGACCAAGACCCTACGGCCTGCTTCCCCTCCTCCTTTCCGCATGCA
TCCTCCTGGAAGTGAGACCATGCAACGCCTTTTGCCTCCCTTTGCCAACG
TCCTCCCTCTTCTCTTGCAGCAGTAGCAGCAGCAGTAGCAGCAGCAGTAG
CACCGAGCCATCTGCGCCAATTCCTAGAATAAGAAGAGCGCGAGCACTGA
TGGTTTCCTTCTCCTCAGCCTCCCCATCCTCCCCCTCCTCCTCCTCATCC
TCCTCCCTCTCCTTCTCCTCCGCCCCCATCTCCGATCCCGGTGAGCTCAA
GCGCCTGCTAATTGAAGCCAAAGCTTCCGTCCAAGCGAACACCGCCTCCT
TAGACCTAGCTAAATTCGAAGGAGAAATCAATTATTACGAGCAAGAGGCC
GCCCAGGAAGGTTTCTGGAGCAAGCCGGCAAAAGCCCGGGCAGTTCTTAC
TAAATTAACGCGATTAAAAGGCATCGTGGCACGGGTGAATGGATGGGAGA
AAATGGTGGAGGATGCGGAGACGGCATTGTTGTTGTGGGAGGAGGAGGAA
GGGGGGGAGAGCGAGGTGTGGGGGCAGGAAGGGAGGGAGGGCTTGCGGAA
GTTGATGGAGGACTTGGAGAGGTGGGAAGTGGAGAGACTTTTATCTGGAC
CTTATGATGGATGTGGATGTCGTATGCTGATTACGGCAGGGGTGGGGGGG
GCAGATGCGAGTGATTGGGCAGGGATGCTTTTGCGGATGTACACGAGGTA
CGGGGAGAGGAAGGGGTGGAAGGTGAGGGTAGTTGAAATGAGCGTGCCGG
TGGAGGGTTTTGGGGTGAAGAGTGCGATGGTGGAGGTGGAGGGAGACATG
GCGTTTGGGTTTCTGAAGGCGGAGAAGGGGACGCATCGGCTGGTGAGAAT
CAGTCCGTTCAACAGTGGAGGCAAGAGGCAGACGAGTTTTGCAGGGGTTG
AGACCATGCCGATCTTGTCCGAGGAGGCGTTGGAGGAGGTGGTGATTGAG
GAGGGGGACGTGGAGATGACCACGTCAAGGGCTGGAGGGGCAGGGGGTCA
GAACGTTAACAAAGTCGAGACGGCCGTGCGGCTGAAGCATCTGCCGACGG
GCTTGGTTGTGAGGTGTCAGGAAGAACGTTCGCAGTTGCTGAACCGGAAG
AAGGCGATGGATATGTTGAAAGAGAAGCTGTTGGTGGTAAAGGAGGAGCA
GAGGGTGGAGGAGCTGGCGGAGATTAGAGGAGACCTAGTGGAGGCGAGCT
GGGGACAGCAGATCCGGAATTACGTTTTGCATCCTTATAAGCTGGTCAAA
GACACGCGGACGGAGAGGGAGACCGTGGATGTAGCGAGCGTCTTGGAGGG
GGGGGAGGGCCTGGATGACTTCGTGGGTGCGTATTTGCGGTGGAGGTCCA
AAGAAAATGTCGTAGAAACGTTGGTTGAAGGATAA
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Coding sequence (CDS) from alignment at chr12:174318..175802-

>NO12G00470.1 ID=NO12G00470.1|Name=NO12G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at chr12:174318..175802- (Nannochloropsis oceanica)
ATGACGGTCATAAGGCCTGGGGCAAGCAGTGGCCATGTAAGGAGCAGACG
GAGAAGACCAAGACCCTACGGCCTGCTTCCCCTCCTCCTTTCCGCATGCA
TCCTCCTGGAAGTGAGACCATGCAACGCCTTTTGCCTCCCTTTGCCAACG
TCCTCCCTCTTCTCTTGCAGCAGTAGCAGCAGCAGTAGCAGCAGCAGTAG
CACCGAGCCATCTGCGCCAATTCCTAGAATAAGAAGAGCGCGAGCACTGA
TGGTTTCCTTCTCCTCAGCCTCCCCATCCTCCCCCTCCTCCTCCTCATCC
TCCTCCCTCTCCTTCTCCTCCGCCCCCATCTCCGATCCCGGTGAGCTCAA
GCGCCTGCTAATTGAAGCCAAAGCTTCCGTCCAAGCGAACACCGCCTCCT
TAGACCTAGCTAAATTCGAAGGAGAAATCAATTATTACGAGCAAGAGGCC
GCCCAGGAAGGTTTCTGGAGCAAGCCGGCAAAAGCCCGGGCAGTTCTTAC
TAAATTAACGCGATTAAAAGGCATCGTGGCACGGGTGAATGGATGGGAGA
AAATGGTGGAGGATGCGGAGACGGCATTGTTGTTGTGGGAGGAGGAGGAA
GGGGGGGAGAGCGAGGTGTGGGGGCAGGAAGGGAGGGAGGGCTTGCGGAA
GTTGATGGAGGACTTGGAGAGGTGGGAAGTGGAGAGACTTTTATCTGGAC
CTTATGATGGATGTGGATGTCGTATGCTGATTACGGCAGGGGTGGGGGGG
GCAGATGCGAGTGATTGGGCAGGGATGCTTTTGCGGATGTACACGAGGTA
CGGGGAGAGGAAGGGGTGGAAGGTGAGGGTAGTTGAAATGAGCGTGCCGG
TGGAGGGTTTTGGGGTGAAGAGTGCGATGGTGGAGGTGGAGGGAGACATG
GCGTTTGGGTTTCTGAAGGCGGAGAAGGGGACGCATCGGCTGGTGAGAAT
CAGTCCGTTCAACAGTGGAGGCAAGAGGCAGACGAGTTTTGCAGGGGTTG
AGACCATGCCGATCTTGTCCGAGGAGGCGTTGGAGGAGGTGGTGATTGAG
GAGGGGGACGTGGAGATGACCACGTCAAGGGCTGGAGGGGCAGGGGGTCA
GAACGTTAACAAAGTCGAGACGGCCGTGCGGCTGAAGCATCTGCCGACGG
GCTTGGTTGTGAGGTGTCAGGAAGAACGTTCGCAGTTGCTGAACCGGAAG
AAGGCGATGGATATGTTGAAAGAGAAGCTGTTGGTGGTAAAGGAGGAGCA
GAGGGTGGAGGAGCTGGCGGAGATTAGAGGAGACCTAGTGGAGGCGAGCT
GGGGACAGCAGATCCGGAATTACGTTTTGCATCCTTATAAGCTGGTCAAA
GACACGCGGACGGAGAGGGAGACCGTGGATGTAGCGAGCGTCTTGGAGGG
GGGGGAGGGCCTGGATGACTTCGTGGGTGCGTATTTGCGGTGGAGGTCCA
AAGAAAATGTCGTAGAAACGTTGGTTGAAGGATAA
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Synonyms
Publications