NO11G00170.1, NO11G00170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00170.1
Unique NameNO11G00170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr11:74427..76245 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:74427..76245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00170.1 vs.
Match: EWM25212.1 (hypothetical protein Naga_101022g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 127.5 bits (319), Expect = 9.100e-26
Identity = 104/271 (38.38%), Postives = 140/271 (51.66%), Query Frame = 0 
Query:  120 GSVSLASFLLSRGASLLATDDEGYTPLICACYFKR--ERLIALFLSSIPPSLP------PSCHVDLPLVADVLH-VGKTALHIACLRQFPQGVQLLLTQGCADPTLQDERGRTPLDVLKWLRWKDAAAAAFAQKCLEEAMREGERAWMMRAGRKAREEGKREGGVGGLSCGEEEEKLEGGKGDDVAG----KGREERQEGRKGGRAGRTDNQHLMTDVEDENEDEDEESGMKRMTAVLTFVMDSDERRKGLCKDLFQELMDFVQVRWAGRV 378
            G+  L ++L     S L T       LI  C F       I  ++ +IPPSL       P       L +  L+ V  T   +     F   + L  + G ADPT+ D+RG+TPLD+L W RW D   A  AQ+ LEEA+RE +R  ++RAGRKARE G R+GG  G   GE E   EGG  ++  G     GRE + + R   RA  +      T+ E++ E+       +++ AVL FV+DS E R GLC DLF+ELM+  QVRWA RV
Sbjct:   50 GNPLLFNYLYIYHPSPLDTHPPSQVILIFLCLFVYILPSCIITYIHAIPPSLTLTLPSRPVSSFSACLCSSFLYDVDATFAPVL----FLPPLFLPSSSGGADPTVVDDRGKTPLDILHWQRWNDVTGAVTAQRLLEEALREPDRVRIVRAGRKAREGGGRKGGRDGGREGEREGGREGGAREEFGGGGQVHGRERKVDARMTKRASGS------TEQEEDGEEGGGRREREKVRAVLKFVLDS-EMRPGLCPDLFEELMEMTQVRWAERV 309
The following BLAST results are available for this feature:
BLAST of NO11G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25212.19.100e-2638.38hypothetical protein Naga_101022g2, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00170NO11G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00170.1NO11G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00170.1.cds1NO11G00170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00170.1.cds2NO11G00170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00170.1.cds3NO11G00170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00170.1 ID=NO11G00170.1|Name=NO11G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGGCCGCCGCCCTCTTCCTCCCCACCCTCCATCCTTCCCTCCCTCCGGC
CCTCCACCTCCGCCTATTCGACGCTGTCCGCGAAGGGGCCCTAGACCGGT
TCGTCCGCCTTTTCTACCAAGCCGAGGCCACGCTGCTCTCCTCCTCCACG
CTGCTCTCCTCCTCCTCCTCCTCTTCCCTCCCTCCCAACCTCCTGCTAGA
ACGGCCCTCCCCTCAGCACAACGGCCGGACCCTCCTCGTGCATGCTTGCT
ATTACAACAAGGAAGAGATAGCCAAGTATCTGGTCGATAGAAAAGGTGCC
CGGGTGGAGGCAACGACGAGGACCGGCAAAACCTCCCTTCACTACGCCGC
CATCAACGGCAGCGTCTCCCTAGCTTCCTTCCTCCTCTCCCGCGGCGCGT
CCCTCCTGGCCACCGACGACGAAGGATACACGCCGCTCATCTGCGCCTGC
TACTTCAAACGTGAACGCCTCATCGCACTCTTCCTCTCCTCCATCCCGCC
CTCTCTTCCACCCTCTTGCCACGTCGACCTCCCCCTTGTGGCCGATGTGC
TGCACGTGGGAAAGACAGCGCTCCATATAGCATGTCTCAGGCAATTTCCT
CAGGGGGTGCAGCTGCTGCTGACCCAAGGCTGTGCCGACCCCACACTGCA
AGACGAGAGAGGGAGAACTCCTCTTGATGTGCTCAAGTGGCTGCGATGGA
AGGATGCTGCTGCTGCTGCCTTTGCCCAAAAATGTCTGGAGGAGGCCATG
CGCGAGGGAGAGAGGGCATGGATGATGAGGGCGGGAAGGAAGGCAAGGGA
GGAGGGAAAGAGGGAGGGAGGGGTAGGAGGACTGAGTTGTGGGGAGGAGG
AAGAGAAGTTGGAAGGGGGGAAGGGGGATGACGTAGCTGGAAAGGGGAGG
GAGGAGCGACAGGAAGGGAGGAAGGGAGGGAGGGCGGGGAGGACAGATAA
CCAGCACCTTATGACTGACGTAGAGGATGAAAACGAGGACGAGGACGAGG
AAAGTGGAATGAAGCGGATGACAGCGGTATTGACCTTTGTGATGGACAGT
GATGAGCGTCGGAAGGGACTGTGTAAGGATTTATTCCAAGAGCTGATGGA
TTTCGTGCAAGTCCGGTGGGCGGGGAGGGTGATGGAGGGAAGGAAGGGAG
GGAGGAGAGGGAGGTAGCAAGCGGTGATTTGCAGATACACATAAGACAAC
AAGAGAATAAGGAAGTCAATGTGGGTCAACAGACTCACGAAAGGATTCAA
GAAAGAAAAAGGTGGATCGAGAGGATACTCACAGGTCTGTGAGCTTCTCA
GGTAAAGAGATAGACAAGAGCGAGCAGTGTGAAAATGAAATGAGATGCAT
GTAAATAAAGCCCCTTCGCCTTCTTGGCGCACTTCATGAAGGCTTCGTTT
GTGGATAAAGAAGGAAAAAGACAAACACTTTGACAAGGAGAGCAGCGGTG
AAAAGTAT
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protein sequence of NO11G00170.1

>NO11G00170.1-protein ID=NO11G00170.1-protein|Name=NO11G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MAAALFLPTLHPSLPPALHLRLFDAVREGALDRFVRLFYQAEATLLSSST
LLSSSSSSSLPPNLLLERPSPQHNGRTLLVHACYYNKEEIAKYLVDRKGA
RVEATTRTGKTSLHYAAINGSVSLASFLLSRGASLLATDDEGYTPLICAC
YFKRERLIALFLSSIPPSLPPSCHVDLPLVADVLHVGKTALHIACLRQFP
QGVQLLLTQGCADPTLQDERGRTPLDVLKWLRWKDAAAAAFAQKCLEEAM
REGERAWMMRAGRKAREEGKREGGVGGLSCGEEEEKLEGGKGDDVAGKGR
EERQEGRKGGRAGRTDNQHLMTDVEDENEDEDEESGMKRMTAVLTFVMDS
DERRKGLCKDLFQELMDFVQVRWAGRVMEGRKGGRRGR*
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mRNA from alignment at chr11:74427..76245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00170.1 ID=NO11G00170.1|Name=NO11G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp|location=Sequence derived from alignment at chr11:74427..76245- (Nannochloropsis oceanica)
ATGGCCGCCGCCCTCTTCCTCCCCACCCTCCATCCTTCCCTCCCTCCGGC
CCTCCACCTCCGCCTATTCGACGCTGTCCGCGAAGGGGCCCTAGACCGGT
TCGTCCGCCTTTTCTACCAAGCCGAGGCCACGCTGCTCTCCTCCTCCACG
CTGCTCTCCTCCTCCTCCTCCTCTTCCCTCCCTCCCAACCTCCTGCTAGA
ACGGCCCTCCCCTCAGCACAACGGCCGGACCCTCCTCGTGCATGCTTGCT
ATTACAACAAGGAAGAGATAGCCAAGTATCTGGTCGATAGAAAAGGTGCC
CGGGTGGAGGCAACGACGAGGACCGGTACATAGGAAGGGGAAGAGGGAGG
GAGGGAGGGAGAGAGGGAGGGAAGGAGGACTATTATTCATCACACAGGGT
GATTCTCACCCCTCCCTCATTCCCTGCTTTCCTTCCTTCCTCCTTCCCCT
CAGGCAAAACCTCCCTTCACTACGCCGCCATCAACGGCAGCGTCTCCCTA
GCTTCCTTCCTCCTCTCCCGCGGCGCGTCCCTCCTGGCCACCGACGACGA
AGGATACACGCCGCTCATCTGCGCCTGCTACTTCAAACGTGAACGCCTCA
TCGCACTCTTCCTCTCCTCCATCCCGCCCTCTCTTCCACCCTCTTGCCAC
GTCGACCTCCCCCTTGTGGCCGATGTGCTGCACGTGGGAAAGACAGCGCT
CCATATAGCATGTCTCAGGCAATTTCCTCAGGGGGTGCAGCTGCTGCTGA
CCCAAGGTAAGCTCTTACTTCCCTCCTTCCTTCCCTCCCACCCTCCTTTC
CTTCCTTCCTTCCTTCCTTCCTTCCAGTCTGCCTTCGTAGAGAGTGTCAT
TCTCATGCTCCCCTTCCGACATGCCTCCCTTCCTCCATCCCTCCTTTTGT
CTTGGCCGTCACCATGGTGCAAGAGGAGGGTGTCATCCTCACCTCCCCTT
CCCTCCTTCCTTCCCTCCCCTCCTCCCTGCCTCCTTCAGGCTGTGCCGAC
CCCACACTGCAAGACGAGAGAGGGAGAACTCCTCTTGATGTGCTCAAGTG
GCTGCGATGGAAGGATGCTGCTGCTGCTGCCTTTGCCCAAAAATGTCTGG
AGGAGGCCATGCGCGAGGGAGAGAGGGCATGGATGATGAGGGCGGGAAGG
AAGGCAAGGGAGGAGGGAAAGAGGGAGGGAGGGGTAGGAGGACTGAGTTG
TGGGGAGGAGGAAGAGAAGTTGGAAGGGGGGAAGGGGGATGACGTAGCTG
GAAAGGGGAGGGAGGAGCGACAGGAAGGGAGGAAGGGAGGGAGGGCGGGG
AGGACAGATAACCAGCACCTTATGACTGACGTAGAGGATGAAAACGAGGA
CGAGGACGAGGAAAGTGGAATGAAGCGGATGACAGCGGTATTGACCTTTG
TGATGGACAGTGATGAGCGTCGGAAGGGACTGTGTAAGGATTTATTCCAA
GAGCTGATGGATTTCGTGCAAGTCCGGTGGGCGGGGAGGGTGATGGAGGG
AAGGAAGGGAGGGAGGAGAGGGAGGTAGCAAGCGGTGATTTGCAGATACA
CATAAGACAACAAGAGAATAAGGAAGTCAATGTGGGTCAACAGACTCACG
AAAGGATTCAAGAAAGAAAAAGGTGGATCGAGAGGATACTCACAGGTCTG
TGAGCTTCTCAGGTAAAGAGATAGACAAGAGCGAGCAGTGTGAAAATGAA
ATGAGATGCATGTAAATAAAGCCCCTTCGCCTTCTTGGCGCACTTCATGA
AGGCTTCGTTTGTGGATAAAGAAGGAAAAAGACAAACACTTTGACAAGGA
GAGCAGCGGTGAAAAGTAT
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Coding sequence (CDS) from alignment at chr11:74427..76245-

>NO11G00170.1 ID=NO11G00170.1|Name=NO11G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at chr11:74427..76245- (Nannochloropsis oceanica)
ATGGCCGCCGCCCTCTTCCTCCCCACCCTCCATCCTTCCCTCCCTCCGGC
CCTCCACCTCCGCCTATTCGACGCTGTCCGCGAAGGGGCCCTAGACCGGT
TCGTCCGCCTTTTCTACCAAGCCGAGGCCACGCTGCTCTCCTCCTCCACG
CTGCTCTCCTCCTCCTCCTCCTCTTCCCTCCCTCCCAACCTCCTGCTAGA
ACGGCCCTCCCCTCAGCACAACGGCCGGACCCTCCTCGTGCATGCTTGCT
ATTACAACAAGGAAGAGATAGCCAAGTATCTGGTCGATAGAAAAGGTGCC
CGGGTGGAGGCAACGACGAGGACCGGCAAAACCTCCCTTCACTACGCCGC
CATCAACGGCAGCGTCTCCCTAGCTTCCTTCCTCCTCTCCCGCGGCGCGT
CCCTCCTGGCCACCGACGACGAAGGATACACGCCGCTCATCTGCGCCTGC
TACTTCAAACGTGAACGCCTCATCGCACTCTTCCTCTCCTCCATCCCGCC
CTCTCTTCCACCCTCTTGCCACGTCGACCTCCCCCTTGTGGCCGATGTGC
TGCACGTGGGAAAGACAGCGCTCCATATAGCATGTCTCAGGCAATTTCCT
CAGGGGGTGCAGCTGCTGCTGACCCAAGGCTGTGCCGACCCCACACTGCA
AGACGAGAGAGGGAGAACTCCTCTTGATGTGCTCAAGTGGCTGCGATGGA
AGGATGCTGCTGCTGCTGCCTTTGCCCAAAAATGTCTGGAGGAGGCCATG
CGCGAGGGAGAGAGGGCATGGATGATGAGGGCGGGAAGGAAGGCAAGGGA
GGAGGGAAAGAGGGAGGGAGGGGTAGGAGGACTGAGTTGTGGGGAGGAGG
AAGAGAAGTTGGAAGGGGGGAAGGGGGATGACGTAGCTGGAAAGGGGAGG
GAGGAGCGACAGGAAGGGAGGAAGGGAGGGAGGGCGGGGAGGACAGATAA
CCAGCACCTTATGACTGACGTAGAGGATGAAAACGAGGACGAGGACGAGG
AAAGTGGAATGAAGCGGATGACAGCGGTATTGACCTTTGTGATGGACAGT
GATGAGCGTCGGAAGGGACTGTGTAAGGATTTATTCCAAGAGCTGATGGA
TTTCGTGCAAGTCCGGTGGGCGGGGAGGGTGATGGAGGGAAGGAAGGGAG
GGAGGAGAGGGAGGTAG
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Synonyms
Publications