NO11G00140.1, NO11G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00140.1
Unique NameNO11G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1362
Alignment locationchr11:63031..64462 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:63031..64462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00140.1 vs.
Match: EWM26413.1 (hypothetical protein Naga_101468g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 265.0 bits (676), Expect = 4.300e-67
Identity = 153/266 (57.52%), Postives = 191/266 (71.80%), Query Frame = 0 
Query:  192 ESSKRVFQAVVIADDCAPETLDVTALAYLVNATDLSAYCAVPLAEPAVVRVRYPGDKKTGKHASSKPVTCAPTPAPSVNPATPFQLFGEGQRCLQAGQLAPFAPDRRLSALDDGELDSLSDVGGKHRRLPVQIDTPTECFEYCSINGNESTPFFFNWNTVTTQCFCCGGECTLILDPDFNAFKVVEAATGAPSA--------SPSSSPSASPSGSPTTAPTASPSSSPSASASGSPTQSPTATPTTSPTATPTTAPTATPTTSPTA 450
            + +KRVF+A    D CAPETL VT LAYLVNATDL+ YCA PLA PAV+ VRY   KK          TCAPTPAP+VNPA PF LFG+GQRCL+A +LAPF  DRRL +  +G  +    +  +HR L   I TP++CF YCS+NG ES PFFFNWNTVT+QCFCCG  CTLI+DP F+A++V   AT AP+A        +P++SP+ +P+ SPT  PTA+P+++P+AS + +PT+SPTA PTTSPTA PT +PTA PT SPTA
Sbjct:  148 KGNKRVFKAKAKVDACAPETLTVTGLAYLVNATDLTTYCATPLASPAVLNVRYSKAKKVA--------TCAPTPAPTVNPAQPFVLFGDGQRCLEASRLAPF-DDRRLLSSSNGR-EYAHSIHREHRHLQ-SIATPSDCFTYCSLNGGESVPFFFNWNTVTSQCFCCGNVCTLIVDPAFSAYEVTMDATSAPTAVSTATPTPAPTASPTLTPTASPTAVPTATPTAAPTASPTAAPTKSPTAAPTTSPTAAPTASPTAAPTASPTA 402
The following BLAST results are available for this feature:
BLAST of NO11G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26413.14.300e-6757.52hypothetical protein Naga_101468g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00140NO11G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00140.1NO11G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00140.1.cds1NO11G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00140.1.cds2NO11G00140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00140.1 ID=NO11G00140.1|Name=NO11G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ATGTCCCGTTGCGAACCCGGGGCTCTGTTCCACAATGCGGTACTGCTCCA
ACTTGTAGGGTCGATCAATCATGGGCACACCCACGGGATACTTGACGAAC
GTGGCCACGGCAATTCCCTGGATGTTAACTGTATGGTGCGGACCTTCCTC
CAACACAATCGAAAAGAGGCTCGGGAAGTGCCTCTTAGTGTCACAGGCGA
ACTCCCAGTGGGGACGAATCCAGCGGGTTCCATTCATGAGGAGTGGATGC
GTAGGATTAATCAGAAAGCCTGGGGCAAGCTCACATACGTCGATCATCGC
GCCGCCACCATTCACGCCCAAGGGAGCCTCAACAAGAGAAAGCATCTTGG
CATGGATATGGAGGTTGTGCGGGTCGACCGAGACGAGGTCGCCTCTGCGA
AGTGCATGAACGGGCTTAGACGTGCCATCCGCCATGACCACGAGTGCGTC
CTTGTTGAAGCAAGGTTGAACAGCGTGGCCGTCGGAGATGCAGTAGGCGT
GGCAGTAGGAGAAGTAGTAGGCGTGGCTGTTGGAGAGGCCGAGGGAGAAG
CCGAAGGGCTGCTTGAGGGCGACGAGAGCTCCAAGCGTGTCTTCCAGGCC
GTGGTGATCGCCGACGACTGTGCCCCTGAGACGCTGGATGTCACTGCCCT
GGCGTACCTTGTCAACGCCACGGACCTGTCCGCTTACTGTGCTGTACCCT
TGGCCGAGCCCGCGGTCGTGCGTGTGCGGTATCCAGGCGACAAGAAGACG
GGCAAACACGCTTCGTCGAAACCTGTCACATGCGCGCCGACCCCGGCCCC
GAGCGTCAACCCCGCAACTCCCTTCCAACTTTTTGGTGAGGGGCAGCGAT
GCTTGCAGGCAGGGCAACTGGCGCCTTTTGCTCCAGATCGCCGTCTGTCG
GCCCTAGATGATGGGGAACTTGATTCGCTAAGCGATGTTGGTGGCAAGCA
CCGTCGACTGCCTGTGCAGATTGATACCCCGACGGAGTGCTTCGAATACT
GCTCGATCAATGGGAATGAATCGACTCCGTTTTTCTTCAACTGGAACACG
GTGACCACTCAGTGCTTTTGCTGCGGTGGAGAATGTACTTTGATTCTTGA
CCCTGATTTCAATGCCTTCAAGGTGGTCGAGGCCGCTACTGGGGCTCCCT
CTGCGTCGCCCTCAAGCAGCCCTTCGGCTTCTCCCTCGGGCAGCCCTACA
ACTGCCCCTACCGCGAGCCCATCTTCATCGCCATCTGCATCTGCCTCGGG
CAGTCCGACCCAATCTCCAACGGCCACGCCTACTACATCCCCGACTGCCA
CGCCTACGACAGCCCCGACGGCCACGCCTACTACATCTCCGACGGCGAAT
AGTCCAATTTGA
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protein sequence of NO11G00140.1

>NO11G00140.1-protein ID=NO11G00140.1-protein|Name=NO11G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MSRCEPGALFHNAVLLQLVGSINHGHTHGILDERGHGNSLDVNCMVRTFL
QHNRKEAREVPLSVTGELPVGTNPAGSIHEEWMRRINQKAWGKLTYVDHR
AATIHAQGSLNKRKHLGMDMEVVRVDRDEVASAKCMNGLRRAIRHDHECV
LVEARLNSVAVGDAVGVAVGEVVGVAVGEAEGEAEGLLEGDESSKRVFQA
VVIADDCAPETLDVTALAYLVNATDLSAYCAVPLAEPAVVRVRYPGDKKT
GKHASSKPVTCAPTPAPSVNPATPFQLFGEGQRCLQAGQLAPFAPDRRLS
ALDDGELDSLSDVGGKHRRLPVQIDTPTECFEYCSINGNESTPFFFNWNT
VTTQCFCCGGECTLILDPDFNAFKVVEAATGAPSASPSSSPSASPSGSPT
TAPTASPSSSPSASASGSPTQSPTATPTTSPTATPTTAPTATPTTSPTAN
SPI*
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mRNA from alignment at chr11:63031..64462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00140.1 ID=NO11G00140.1|Name=NO11G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at chr11:63031..64462- (Nannochloropsis oceanica)
ATGTCCCGTTGCGAACCCGGGGCTCTGTTCCACAATGCGGTACTGCTCCA
ACTTGTAGGGTCGATCAATCATGGGCACACCCACGGGATACTTGACGAAC
GTGGCCACGGCAATTCCCTGGATGTTAACTGTATGGTGCGGACCTTCCTC
CAACACAATCGAAAAGAGGCTCGGGAAGTGCCTCTTAGTGTCACAGGCGA
ACTCCCAGTGGGGACGAATCCAGCGGGTTCCATTCATGAGGAGTGGATGC
GTAGGATTAATCAGAAAGCCTGGGGCAAGCTCACATACGTCGATCATCGC
GCCGCCACCATTCACGCCCAAGGGAGCCTCAACAAGAGAAAGCATCTTGG
CATGGATATGGAGGTTGTGCGGGTCGACCGAGACGAGGTCGCCTCTGCGA
AGTGCATGAACGGGCTTAGACGTGCCATCCGCCATGACCACGAGTGCGTC
CTTGTTGAAGCAAGGTTGAACAGTAGGTGCGGGAGTCGCACTAGGCGTGG
CCGTCGGAGATGTAGTAGGCGTGGCCGTTGGAGATGCAGTAGGCGTGGCC
GTCGGAGATGCAGTAGGCGTGGCAGTAGGAGAAGTAGTAGGCGTGGCTGT
TGGAGAGGCCGAGGGAGAAGCCGAAGGGCTGCTTGAGGGCGACGAGAGCT
CCAAGCGTGTCTTCCAGGCCGTGGTGATCGCCGACGACTGTGCCCCTGAG
ACGCTGGATGTCACTGCCCTGGCGTACCTTGTCAACGCCACGGACCTGTC
CGCTTACTGTGCTGTACCCTTGGCCGAGCCCGCGGTCGTGCGTGTGCGGT
ATCCAGGCGACAAGAAGACGGGCAAACACGCTTCGTCGAAACCTGTCACA
TGCGCGCCGACCCCGGCCCCGAGCGTCAACCCCGCAACTCCCTTCCAACT
TTTTGGTGAGGGGCAGCGATGCTTGCAGGCAGGGCAACTGGCGCCTTTTG
CTCCAGATCGCCGTCTGTCGGCCCTAGATGATGGGGAACTTGATTCGCTA
AGCGATGTTGGTGGCAAGCACCGTCGACTGCCTGTGCAGATTGATACCCC
GACGGAGTGCTTCGAATACTGCTCGATCAATGGGAATGAATCGACTCCGT
TTTTCTTCAACTGGAACACGGTGACCACTCAGTGCTTTTGCTGCGGTGGA
GAATGTACTTTGATTCTTGACCCTGATTTCAATGCCTTCAAGGTGGTCGA
GGCCGCTACTGGGGCTCCCTCTGCGTCGCCCTCAAGCAGCCCTTCGGCTT
CTCCCTCGGGCAGCCCTACAACTGCCCCTACCGCGAGCCCATCTTCATCG
CCATCTGCATCTGCCTCGGGCAGTCCGACCCAATCTCCAACGGCCACGCC
TACTACATCCCCGACTGCCACGCCTACGACAGCCCCGACGGCCACGCCTA
CTACATCTCCGACGGCGAATAGTCCAATTTGA
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Coding sequence (CDS) from alignment at chr11:63031..64462-

>NO11G00140.1 ID=NO11G00140.1|Name=NO11G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr11:63031..64462- (Nannochloropsis oceanica)
ATGTCCCGTTGCGAACCCGGGGCTCTGTTCCACAATGCGGTACTGCTCCA
ACTTGTAGGGTCGATCAATCATGGGCACACCCACGGGATACTTGACGAAC
GTGGCCACGGCAATTCCCTGGATGTTAACTGTATGGTGCGGACCTTCCTC
CAACACAATCGAAAAGAGGCTCGGGAAGTGCCTCTTAGTGTCACAGGCGA
ACTCCCAGTGGGGACGAATCCAGCGGGTTCCATTCATGAGGAGTGGATGC
GTAGGATTAATCAGAAAGCCTGGGGCAAGCTCACATACGTCGATCATCGC
GCCGCCACCATTCACGCCCAAGGGAGCCTCAACAAGAGAAAGCATCTTGG
CATGGATATGGAGGTTGTGCGGGTCGACCGAGACGAGGTCGCCTCTGCGA
AGTGCATGAACGGGCTTAGACGTGCCATCCGCCATGACCACGAGTGCGTC
CTTGTTGAAGCAAGGTTGAACAGCGTGGCCGTCGGAGATGCAGTAGGCGT
GGCAGTAGGAGAAGTAGTAGGCGTGGCTGTTGGAGAGGCCGAGGGAGAAG
CCGAAGGGCTGCTTGAGGGCGACGAGAGCTCCAAGCGTGTCTTCCAGGCC
GTGGTGATCGCCGACGACTGTGCCCCTGAGACGCTGGATGTCACTGCCCT
GGCGTACCTTGTCAACGCCACGGACCTGTCCGCTTACTGTGCTGTACCCT
TGGCCGAGCCCGCGGTCGTGCGTGTGCGGTATCCAGGCGACAAGAAGACG
GGCAAACACGCTTCGTCGAAACCTGTCACATGCGCGCCGACCCCGGCCCC
GAGCGTCAACCCCGCAACTCCCTTCCAACTTTTTGGTGAGGGGCAGCGAT
GCTTGCAGGCAGGGCAACTGGCGCCTTTTGCTCCAGATCGCCGTCTGTCG
GCCCTAGATGATGGGGAACTTGATTCGCTAAGCGATGTTGGTGGCAAGCA
CCGTCGACTGCCTGTGCAGATTGATACCCCGACGGAGTGCTTCGAATACT
GCTCGATCAATGGGAATGAATCGACTCCGTTTTTCTTCAACTGGAACACG
GTGACCACTCAGTGCTTTTGCTGCGGTGGAGAATGTACTTTGATTCTTGA
CCCTGATTTCAATGCCTTCAAGGTGGTCGAGGCCGCTACTGGGGCTCCCT
CTGCGTCGCCCTCAAGCAGCCCTTCGGCTTCTCCCTCGGGCAGCCCTACA
ACTGCCCCTACCGCGAGCCCATCTTCATCGCCATCTGCATCTGCCTCGGG
CAGTCCGACCCAATCTCCAACGGCCACGCCTACTACATCCCCGACTGCCA
CGCCTACGACAGCCCCGACGGCCACGCCTACTACATCTCCGACGGCGAAT
AGTCCAATTTGA
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Synonyms
Publications