NO10G03250.1, NO10G03250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03250.1
Unique NameNO10G03250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1235
Alignment locationchr10:913058..914527 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:913058..914527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03250.1 vs.
Match: XP_005854568.1 (dnase domain containing 3 [Nannochloropsis gaditana CCMP526]; EKU21792.1 dnase domain containing 3 [Nannochloropsis gaditana CCMP526]; EWM25551.1 dnase domain containing 3 [Nannochloropsis gaditana])

HSP 1 Score: 354.0 bits (907), Expect = 4.600e-94
Identity = 179/284 (63.03%), Postives = 219/284 (77.11%), Query Frame = 0 
Query:    1 MFDVHAHLTAPELLPHLESLLAEAHSAGVHDILVVSENLQDAALVLALPTTQGGVRLHKALGLHPEYACLEALSAMLTLIRTHHSELTCIGEIGLDYSPHVLGEKHPEATKIIQQECMRQQVVLALELDMAVNVHSRSAGHHALALLRETAATAIAAAAEEGPEGHERRKRG------ARAVFHAWDGKAHYAEAAASDTEHDIYFSVPPCAQRCPLMSKWIARLPLERLLLETDCPALAPFKGDVNVPKNLGVSVEVVGIAKGMGMEEIVQATRRNAERLFGL 279
            MFDVHAHLTA ELLP L+ LL EA+S GV DI+VVSEN++DAALVL LP  Q GVRLHK+LGLHPE+ACL++LS +L LIR +H++L C+GEIGLD+SPH+LG    EA K +Q+ECMRQQV LA ELD+ VNVHSR AGHHAL+LLRET + +  A   +  E    + R        RAV HAWDGKA YA AAA+D++  IYFSVPPCA R P+M KWI RLPLE LLLETDCPALA  KG+VNVP+NL +S++V+G  KG+G++ + + TR+NAE LFGL
Sbjct:    1 MFDVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNGVRLHKSLGLHPEHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELFGL 284
The following BLAST results are available for this feature:
BLAST of NO10G03250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854568.14.600e-9463.03dnase domain containing 3 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03250NO10G03250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03250.1NO10G03250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03250.1.cds1NO10G03250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03250.1.cds2NO10G03250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03250.1 ID=NO10G03250.1|Name=NO10G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1235bp
CGTTGGATTTCTCATGCATGAATGGGCTCTCAAGATCTCTCAGCCAACGG
CAGCCGACAGACACAGGAGGTTGAGCAGTGTCTTGATGGTGGCCATGAAC
ATGCACTACACGGTGGTCGAAGTTGCTTTACGCTTGCTCAATCGAATGCA
TCCGTGATAGTTCTGCTGACTGAAAAGCTCAAAGTTATGTCGATCGCTGC
TGCGGGAGTTCTTAGTCGCCGGCTCACCAACAGCGATGTATAGGAATGAT
CATTTCTGTCGTAGCTATTCTACAATCATTCCCATTTAGCACCAGAGGCA
AGCGGAAGAATGTTCGACGTCCACGCCCATTTGACAGCACCGGAACTGCT
GCCACATTTGGAGAGCTTATTAGCAGAGGCACACAGCGCCGGCGTCCACG
ACATCCTGGTCGTCTCAGAAAACTTGCAAGATGCCGCCTTGGTCCTCGCT
TTACCTACCACTCAAGGTGGTGTACGTTTACACAAGGCCTTGGGTCTCCA
TCCTGAATACGCATGCCTAGAGGCCTTGTCCGCTATGCTGACGCTCATCC
GAACTCATCACTCTGAGCTCACGTGCATTGGCGAGATTGGCTTGGACTAT
TCTCCGCACGTCCTGGGAGAGAAACACCCCGAGGCTACAAAAATAATACA
ACAGGAATGCATGCGACAGCAAGTCGTACTTGCCCTTGAGCTCGATATGG
CTGTTAATGTCCACTCTCGCTCGGCGGGCCACCATGCCTTGGCCTTGCTC
AGGGAAACTGCAGCAACAGCAATTGCAGCTGCGGCTGAAGAGGGACCAGA
AGGGCACGAACGAAGAAAAAGAGGTGCTAGAGCAGTTTTTCATGCGTGGG
ATGGAAAGGCTCATTATGCTGAAGCGGCAGCCTCGGACACCGAGCACGAC
ATTTACTTCTCCGTGCCTCCCTGTGCTCAACGTTGCCCCTTGATGTCCAA
GTGGATAGCCCGTCTACCTCTTGAACGGCTGCTGCTGGAAACAGATTGTC
CAGCACTGGCGCCTTTTAAAGGGGACGTTAATGTGCCAAAAAATCTTGGA
GTTTCGGTTGAGGTGGTAGGGATCGCCAAAGGAATGGGAATGGAGGAAAT
AGTACAGGCGACCCGGAGGAATGCGGAGCGATTGTTTGGCTTAGGTTTTG
CGACAGGGATGGACAGAGGGTACAAAAAGTATGAGACAACTGGATAAGAG
GAGAAGTAAAGTAAACATCTATTGTATTCGTGCGA
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protein sequence of NO10G03250.1

>NO10G03250.1-protein ID=NO10G03250.1-protein|Name=NO10G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MFDVHAHLTAPELLPHLESLLAEAHSAGVHDILVVSENLQDAALVLALPT
TQGGVRLHKALGLHPEYACLEALSAMLTLIRTHHSELTCIGEIGLDYSPH
VLGEKHPEATKIIQQECMRQQVVLALELDMAVNVHSRSAGHHALALLRET
AATAIAAAAEEGPEGHERRKRGARAVFHAWDGKAHYAEAAASDTEHDIYF
SVPPCAQRCPLMSKWIARLPLERLLLETDCPALAPFKGDVNVPKNLGVSV
EVVGIAKGMGMEEIVQATRRNAERLFGLGFATGMDRGYKKYETTG*
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mRNA from alignment at chr10:913058..914527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03250.1 ID=NO10G03250.1|Name=NO10G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp|location=Sequence derived from alignment at chr10:913058..914527+ (Nannochloropsis oceanica)
CGTTGGATTTCTCATGCATGAATGGGCTCTCAAGATCTCTCAGCCAACGG
CAGCCGACAGACACAGGAGGTTGAGCAGTGTCTTGATGGTGGCCATGAAC
ATGCACTACACGGTGGTCGAAGTTGCTTTACGCTTGCTCAATCGAATGCA
TCCGTGATAGTTCTGCTGACTGAAAAGCTCAAAGTTATGTCGATCGCTGC
TGCGGGAGTTCTTAGTCGCCGGCTCACCAACAGCGATGTATAGGAATGAT
CATTTCTGTCGTAGCTATTCTACAATCATTCCCATTTAGCACCAGAGGCA
AGCGGAAGAATGTTCGACGTCCACGCCCATTTGACAGCACCGGAACTGCT
GCCACATTTGGAGAGCTTATTAGCAGAGGCACACAGGTAAGCACGCTTGC
CTCCCACCCTACACCCTCTCCACTCCACCATTATCGCTCCAATATAATGC
CCCAAATGGAAAGTAAAGTGTAACAGGCTTTAGAGATGTCTATGAAAGAG
TCAGTCAGTGATTTTGAGCAGATAAAACACGGATTTGAAATTTAGCGCCA
TCCATGCTGTGCGACCCGCCCGAATTCGACACTCACACTCTCGCCAATGC
TCTCCCCATCCATCCTAATAGCGCCGGCGTCCACGACATCCTGGTCGTCT
CAGAAAACTTGCAAGATGCCGCCTTGGTCCTCGCTTTACCTACCACTCAA
GGTGGTGTACGTTTACACAAGGCCTTGGGTCTCCATCCTGAATACGCATG
CCTAGAGGCCTTGTCCGCTATGCTGACGCTCATCCGAACTCATCACTCTG
AGCTCACGTGCATTGGCGAGATTGGCTTGGACTATTCTCCGCACGTCCTG
GGAGAGAAACACCCCGAGGCTACAAAAATAATACAACAGGAATGCATGCG
ACAGCAAGTCGTACTTGCCCTTGAGCTCGATATGGCTGTTAATGTCCACT
CTCGCTCGGCGGGCCACCATGCCTTGGCCTTGCTCAGGGAAACTGCAGCA
ACAGCAATTGCAGCTGCGGCTGAAGAGGGACCAGAAGGGCACGAACGAAG
AAAAAGAGGTGCTAGAGCAGTTTTTCATGCGTGGGATGGAAAGGCTCATT
ATGCTGAAGCGGCAGCCTCGGACACCGAGCACGACATTTACTTCTCCGTG
CCTCCCTGTGCTCAACGTTGCCCCTTGATGTCCAAGTGGATAGCCCGTCT
ACCTCTTGAACGGCTGCTGCTGGAAACAGATTGTCCAGCACTGGCGCCTT
TTAAAGGGGACGTTAATGTGCCAAAAAATCTTGGAGTTTCGGTTGAGGTG
GTAGGGATCGCCAAAGGAATGGGAATGGAGGAAATAGTACAGGCGACCCG
GAGGAATGCGGAGCGATTGTTTGGCTTAGGTTTTGCGACAGGGATGGACA
GAGGGTACAAAAAGTATGAGACAACTGGATAAGAGGAGAAGTAAAGTAAA
CATCTATTGTATTCGTGCGA
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Coding sequence (CDS) from alignment at chr10:913058..914527+

>NO10G03250.1 ID=NO10G03250.1|Name=NO10G03250.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr10:913058..914527+ (Nannochloropsis oceanica)
ATGTTCGACGTCCACGCCCATTTGACAGCACCGGAACTGCTGCCACATTT
GGAGAGCTTATTAGCAGAGGCACACAGCGCCGGCGTCCACGACATCCTGG
TCGTCTCAGAAAACTTGCAAGATGCCGCCTTGGTCCTCGCTTTACCTACC
ACTCAAGGTGGTGTACGTTTACACAAGGCCTTGGGTCTCCATCCTGAATA
CGCATGCCTAGAGGCCTTGTCCGCTATGCTGACGCTCATCCGAACTCATC
ACTCTGAGCTCACGTGCATTGGCGAGATTGGCTTGGACTATTCTCCGCAC
GTCCTGGGAGAGAAACACCCCGAGGCTACAAAAATAATACAACAGGAATG
CATGCGACAGCAAGTCGTACTTGCCCTTGAGCTCGATATGGCTGTTAATG
TCCACTCTCGCTCGGCGGGCCACCATGCCTTGGCCTTGCTCAGGGAAACT
GCAGCAACAGCAATTGCAGCTGCGGCTGAAGAGGGACCAGAAGGGCACGA
ACGAAGAAAAAGAGGTGCTAGAGCAGTTTTTCATGCGTGGGATGGAAAGG
CTCATTATGCTGAAGCGGCAGCCTCGGACACCGAGCACGACATTTACTTC
TCCGTGCCTCCCTGTGCTCAACGTTGCCCCTTGATGTCCAAGTGGATAGC
CCGTCTACCTCTTGAACGGCTGCTGCTGGAAACAGATTGTCCAGCACTGG
CGCCTTTTAAAGGGGACGTTAATGTGCCAAAAAATCTTGGAGTTTCGGTT
GAGGTGGTAGGGATCGCCAAAGGAATGGGAATGGAGGAAATAGTACAGGC
GACCCGGAGGAATGCGGAGCGATTGTTTGGCTTAGGTTTTGCGACAGGGA
TGGACAGAGGGTACAAAAAGTATGAGACAACTGGATAA
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Synonyms
Publications