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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:708443..711666 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02590.1 vs.
Match: EWM25472.1 (geranylgeranyl reductase [Nannochloropsis gaditana]) HSP 1 Score: 909.4 bits (2349), Expect = 4.500e-261 Identity = 457/472 (96.82%), Postives = 461/472 (97.67%), Query Frame = 0
Query: 1 MKSALFVSSLLMGAQAFTPTLPLNNAFVQRQAARAEPARAARGRGDMDMKYRVVVVGGGPSGSCAAEEMAKDKNIETVLLERKMDNAKPCGGAIPLCMVSEFDLPPEIIDRKVRKMKMISPTNREVDIGQTLKPNEYIGMTRREVLDGFLRQRAVNNGATAINGLVTKVELPTTEGGRYKIHYSNFEKGTGAAGVPEMIEADVIIGADGANSRVAKAIDAGEYNYAIAFQERIKISEEKMQFYEELAEMYVGDDVSPDFYAWVFPKYDHVGVGTGTVINRPAIKMYQKAIRDRAGDKIANGKIIKVEAHPIPEHPRPRRVVGRVALIGDAAGYVTKCSGEGIYFAAKSGRMAAASIRELMAGGTRLPTEKEIKDTYIKDYDRLYGPTYTVLDILQKVFYSSNAAREAFVELCESEYVQKVTFDSYLYKRVQGNNPVEDIKLLFKTIGALMRGNALAPPDKPVYNPVESLKRL 473
MKSA FVSSLL+GAQAF PTLPLNNAFVQRQAARAEP RA R RGD+DMKYRVVVVGGGPSGSCAAEE+AKDKNIETVLLERKMDNAKPCGGAIPLCMVSEFDLP EIIDRKVRKMKMISPTNREVDIGQTLKPNEYIGMTRREVLDGFLRQRAVN GATAINGLVTKVELPTTEGGRYKIHYSNFEKGTGAAGVPE IEADVIIGADGANSRVAKAIDAGEYNYAIAFQERIKISEEKM FYEELAEMYVGDDVSPDFYAWVFPKYDHVGVGTGTVINRPAIKMYQKAIRDRAGDKIANGKIIKVEAHPIPEHPRPRRVVGRVALIGDAAGYVTKCSGEGIYFAAKSGRMAA SIRELMAGGTRLPTEKEIKDTYIKDYDRLYGPTYTVLDILQ+VFYSSNAAREAFVELCESEYVQKVTFDSYLYKRVQGNNPVEDIKLLFKTIGALMRGNALAP DKPVYNPVESLKRL
Sbjct: 42 MKSAFFVSSLLVGAQAFNPTLPLNNAFVQRQAARAEPIRAVRTRGDVDMKYRVVVVGGGPSGSCAAEELAKDKNIETVLLERKMDNAKPCGGAIPLCMVSEFDLPAEIIDRKVRKMKMISPTNREVDIGQTLKPNEYIGMTRREVLDGFLRQRAVNTGATAINGLVTKVELPTTEGGRYKIHYSNFEKGTGAAGVPETIEADVIIGADGANSRVAKAIDAGEYNYAIAFQERIKISEEKMNFYEELAEMYVGDDVSPDFYAWVFPKYDHVGVGTGTVINRPAIKMYQKAIRDRAGDKIANGKIIKVEAHPIPEHPRPRRVVGRVALIGDAAGYVTKCSGEGIYFAAKSGRMAAQSIRELMAGGTRLPTEKEIKDTYIKDYDRLYGPTYTVLDILQRVFYSSNAAREAFVELCESEYVQKVTFDSYLYKRVQGNNPVEDIKLLFKTIGALMRGNALAPRDKPVYNPVESLKRL 513
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02590.1 ID=NO10G02590.1|Name=NO10G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2725bp
ATTTGTTCTGGGGGGCTGCTTTAGACCCCTCTATGACTGCGACCTGCTGA
GCGCATCCGTCGGACCTTTGTATGTAGGCGACTCAATGTCTCCTTCCGCA
TTGCCTGTGCTGATGCTCTAGTGGTCTACAATGCCAAGCCAAGCGCATTC
CCACTCTCACCCGTGGCCACACAGAGCTTGTATCCTTCATCTTGCAGTTG
TTGTTGCTGGGTGCAGCACTGAAAGCGAGCGGTCCTTTTCGTTTCGGCTG
CTGCTCTTATAGCGCACTGTCCCGCGTACTCCGCAGCGCTCTCTTTCGAA
TCTATCCACGCGCCTCTGTCCTTCTCGCGGCTCTGGTTGTGCCTGTGTCC
TTCCCACACATGCCCTGCTCACTGTTCTTACTCTCGCCCCTTTCCCACTG
CTACTTGAATAGGAAGCCACCATGAAGTCCGCCCTCTTTGTGTCCTCCCT
CCTTATGGGGGCCCAAGCGTTCACGCCCACGCTGCCCCTCAACAACGCCT
TTGTCCAACGCCAGGCTGCCCGCGCCGAGCCGGCCCGTGCCGCCCGTGGA
CGAGGAGACATGGACATGAAGTACCGCGTGGTAGTGGTGGGCGGTGGCCC
CTCGGGCTCCTGCGCTGCCGAGGAGATGGCGAAGGACAAGAATATCGAGA
CCGTCCTCCTGGAGCGCAAGATGGACAACGCCAAGCCCTGCGGTGGTGCT
ATCCCCCTCTGCATGGTGTCCGAGTTTGACCTGCCCCCTGAGATCATCGA
CCGAAAGGTCCGCAAGATGAAGATGATCAGCCCGACCAACCGCGAGGTGG
ACATTGGGCAGACGCTGAAGCCCAATGAGTACATCGGTATGACCCGCCGC
GAAGTTCTGGACGGATTCCTGCGTCAACGTGCTGTGAACAACGGCGCGAC
GGCCATCAACGGCCTGGTTACCAAGGTGGAGCTCCCCACCACCGAGGGCG
GGCGCTACAAGATTCACTACTCCAACTTCGAGAAGGGAACGGGCGCTGCT
GGTGTCCCGGAGATGATCGAGGCCGATGTGATCATTGGTGCTGATGGTGC
CAACTCCCGCGTGGCCAAGGCGATCGATGCCGGCGAGTACAACTACGCGA
TTGCCTTCCAGGAGCGCATCAAGATCTCAGAGGAGAAGATGCAGTTCTAT
GAGGAACTGGCGGAGATGTATGTGGGCGATGACGTGTCCCCTGATTTCTA
TGCGTGGGTCTTCCCCAAGTATGACCATGTGGGTGTCGGGACAGGGACGG
TGATCAACCGACCTGCCATCAAGATGTACCAGAAGGCCATCCGCGACCGT
GCCGGTGACAAGATTGCCAACGGGAAGATCATCAAGGTGGAGGCTCACCC
TATCCCCGAGCATCCCCGCCCCAGGCGTGTGGTGGGCCGTGTAGCTCTCA
TTGGCGATGCTGCTGGTTATGTGACCAAATGCTCGGGGGAGGGAATTTAC
TTTGCCGCCAAGTCCGGCCGTATGGCCGCGGCGTCCATCAGGGAGTTGAT
GGCAGGGGGGACAAGGCTACCGACGGAGAAGGAGATCAAGGACACGTACA
TTAAGGACTACGACCGACTTTATGGTCCTACGTACACGGTGCTGGACATC
TTGCAGAAGGTGTTTTACTCGTCTAACGCAGCCAGGGAGGCGTTCGTGGA
GTTGTGCGAGAGTGAGTACGTGCAGAAGGTGACGTTCGACTCCTACCTGT
ACAAGCGTGTACAGGGCAACAACCCGGTGGAGGACATCAAGCTGTTGTTC
AAGACCATTGGTGCCTTGATGCGTGGCAATGCCTTGGCTCCCCCTGACAA
GCCGGTCTACAACCCGGTGGAGAGCTTGAAACGGTTGTAAGCGGGTCGGA
CGAGGAAAGGAGGGAGGAAGGAAGGAATGAAGGACATGGTGGTACGTGGA
GGAAATAAATAAGGAACCTGCTTGATGCATTGTAATGTGTCTGGTCAACC
CTGTCAGGTATCCGAAGCGTCTGTAAAATGGTGCTTAGGGAATGATTAAA
GGAATGGAGTTTTGATAAGGTGGGGAGACGGGTTTGTTTTGTATGTGTGT
TGTGCTTGTTTTTTTGAGTGGAGGACATCAGGAACGACAGGGGATCAAGC
GAGCGTGCGTGCGTAGAGGTAGAAGAAGAGACCCACGTCGGCACCAGCAA
TTCAGGGATACAGACCCCAGAGCACCAATCGATTTGTCAACCCAATGGAG
GTCTCAGGAAGGAGAACAAATTCAATGCAAGCGATAAGAGAAAAAGCCAT
GAAATGATACCACTCCGGCGATTAAAGATATGTGAAAGGGTGGTTCACAA
GGGACTATAGATAGATTACAAAGGGGAAATGAAAAGGAGGAGGAGAAAGA
ACAAGAGGAGAGGGAAGGGGTTAACGGTATGAAAGTGAAAACCAAGGGAC
GGACGGCCTGAAGTAGCCGTGTCGCCCCCCCCCCCCCGCTGTCTAGATAG
AGAACACACAAGCCACATCATGAAGGAGGAGAGAAAACATAAAGAAAAAT
TTAAGAGAACACAGAAGACGACAACACACAACAGCCAGGTCCGCCATTTC
ACCCCCAGAATTAGCTTCGTTCTCTTCCTTTTCCTCCTGTACCAACATTC
AAACATGTGTAATTTGCGACAAAGTTCAATAAGGAAAGTCAAGAGACAAG
ACACAGGAAGGGAACCAACACCCCTTCACTCACATAAATGAAAAGAAGAA
AACGAGAGCGCTTCCCGAGCACCAC back to topprotein sequence of NO10G02590.1 >NO10G02590.1-protein ID=NO10G02590.1-protein|Name=NO10G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MKSALFVSSLLMGAQAFTPTLPLNNAFVQRQAARAEPARAARGRGDMDMK
YRVVVVGGGPSGSCAAEEMAKDKNIETVLLERKMDNAKPCGGAIPLCMVS
EFDLPPEIIDRKVRKMKMISPTNREVDIGQTLKPNEYIGMTRREVLDGFL
RQRAVNNGATAINGLVTKVELPTTEGGRYKIHYSNFEKGTGAAGVPEMIE
ADVIIGADGANSRVAKAIDAGEYNYAIAFQERIKISEEKMQFYEELAEMY
VGDDVSPDFYAWVFPKYDHVGVGTGTVINRPAIKMYQKAIRDRAGDKIAN
GKIIKVEAHPIPEHPRPRRVVGRVALIGDAAGYVTKCSGEGIYFAAKSGR
MAAASIRELMAGGTRLPTEKEIKDTYIKDYDRLYGPTYTVLDILQKVFYS
SNAAREAFVELCESEYVQKVTFDSYLYKRVQGNNPVEDIKLLFKTIGALM
RGNALAPPDKPVYNPVESLKRL* back to topmRNA from alignment at chr10:708443..711666- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02590.1 ID=NO10G02590.1|Name=NO10G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=3224bp|location=Sequence derived from alignment at chr10:708443..711666- (Nannochloropsis oceanica)
ATTTGTTCTGGGGGGCTGCTTTAGACCCCTCTATGACTGCGACCTGCTGA
GCGCATCCGTCGGACCTTTGTATGTAGGCGACTCAATGTCTCCTTCCGCA
TTGCCTGTGCTGATGCTCTAGTGGTCTACAATGCCAAGCCAAGCGCATTC
CCACTCTCACCCGTGGCCACACAGAGCTTGTATCCTTCATCTTGCAGTTG
TTGTTGCTGGGTGCAGCACTGAAAGCGAGCGGTCCTTTTCGTTTCGGCTG
CTGCTCTTATAGCGCACTGTCCCGCGTACTCCGCAGCGCTCTCTTTCGAA
TCTATCCACGCGCCTCTGTCCTTCTCGCGGCTCTGGTTGTGCCTGTGTCC
TTCCCACACATGCCCTGCTCACTGTTCTTACTCTCGCCCCTTTCCCACTG
CTACTTGAATAGGAAGCCACCATGAAGTCCGCCCTCTTTGTGTCCTCCCT
CCTTATGGGGGCCCAAGCGTTCACGCCCACGCTGCCCCTCAACAACGCCT
TTGTCCAACGCCAGGCTGCCCGCGCCGAGCCGGCCCGTGCCGCCCGTGGA
CGAGGAGGTGAGTCAGTGCGAGGGCGGGGACAGTATAGTGAAACGCAAAG
ATATTCGCGTAAGGGAACAAAAAGGGCAAGTCGAGATGCAAGGGTCGTAT
AGAAACATGACATCATCACCATCTTGTTGCACTCACCCTAATTTACTGCC
CGGTCGTGCCTTACTTGTGACACAGTAGAAAACAACTCAAGCCATTCTCC
CCACCACCCACCGTCCCACTTCCCCTTTTTCCTCACTCGCCTTCCGTATG
AACATGTTAGCACAGAGATTCTCAATCTTACCACTCCCTCACATCACCAG
CGCCCTTATGTTCCTCACTCAAGTTCGGACACCACAAATGACTCACCATT
TCACTGCGATCCCTTCCCCGCAGGGCGGGTTCAGACATGATCAACAACAT
CAATACGTTCCCCTTGCTTCCTAGCTCGCTCTGTAGGAGCAGAATATTCA
CACCAATCACTCTTTTCACCACCTTCTCACTCTCTTTGTCCTCCCCTCCC
AAACAGACATGGACATGAAGTACCGCGTGGTAGTGGTGGGCGGTGGCCCC
TCGGGCTCCTGCGCTGCCGAGGAGATGGCGAAGGACAAGAATATCGAGAC
CGTCCTCCTGGAGCGCAAGATGGACAACGCCAAGCCCTGCGGTGGTGCTA
TCCCCCTCTGCATGGTGTCCGAGTTTGACCTGCCCCCTGAGATCATCGAC
CGAAAGGTCCGCAAGATGAAGATGATCAGCCCGACCAACCGCGAGGTGGA
CATTGGGCAGACGCTGAAGCCCAATGAGTACATCGGTATGACCCGCCGCG
AAGTTCTGGACGGATTCCTGCGTCAACGTGCTGTGAACAACGGCGCGACG
GCCATCAACGGCCTGGTTACCAAGGTGGAGCTCCCCACCACCGAGGGCGG
GCGCTACAAGATTCACTACTCCAACTTCGAGAAGGGAACGGGCGCTGCTG
GTGTCCCGGAGATGATCGAGGCCGATGTGATCATTGGTGCTGATGGTGCC
AACTCCCGCGTGGCCAAGGCGATCGATGCCGGCGAGTACAACTACGCGAT
TGCCTTCCAGGAGCGCATCAAGATCTCAGAGGAGAAGATGCAGTTCTATG
AGGAACTGGCGGAGATGTATGTGGGCGATGACGTGTCCCCTGATTTCTAT
GCGTGGGTCTTCCCCAAGTATGACCATGTGGGTGTCGGGACAGGGACGGT
GATCAACCGACCTGCCATCAAGATGTACCAGAAGGCCATCCGCGACCGTG
CCGGTGACAAGATTGCCAACGGGAAGATCATCAAGGTGGAGGCTCACCCT
ATCCCCGAGCATCCCCGCCCCAGGCGTGTGGTGGGCCGTGTAGCTCTCAT
TGGCGATGCTGCTGGTTATGTGACCAAATGCTCGGGGGAGGGAATTTACT
TTGCCGCCAAGTCCGGCCGTATGGCCGCGGCGTCCATCAGGGAGTTGATG
GCAGGGGGGACAAGGCTACCGACGGAGAAGGAGATCAAGGACACGTACAT
TAAGGACTACGACCGACTTTATGGTCCTACGTACACGGTGCTGGACATCT
TGCAGAAGGTGTTTTACTCGTCTAACGCAGCCAGGGAGGCGTTCGTGGAG
TTGTGCGAGAGTGAGTACGTGCAGAAGGTGACGTTCGACTCCTACCTGTA
CAAGCGTGTACAGGGCAACAACCCGGTGGAGGACATCAAGCTGTTGTTCA
AGACCATTGGTGCCTTGATGCGTGGCAATGCCTTGGCTCCCCCTGACAAG
CCGGTCTACAACCCGGTGGAGAGCTTGAAACGGTTGTAAGCGGGTCGGAC
GAGGAAAGGAGGGAGGAAGGAAGGAATGAAGGACATGGTGGTACGTGGAG
GAAATAAATAAGGAACCTGCTTGATGCATTGTAATGTGTCTGGTCAACCC
TGTCAGGTATCCGAAGCGTCTGTAAAATGGTGCTTAGGGAATGATTAAAG
GAATGGAGTTTTGATAAGGTGGGGAGACGGGTTTGTTTTGTATGTGTGTT
GTGCTTGTTTTTTTGAGTGGAGGACATCAGGAACGACAGGGGATCAAGCG
AGCGTGCGTGCGTAGAGGTAGAAGAAGAGACCCACGTCGGCACCAGCAAT
TCAGGGATACAGACCCCAGAGCACCAATCGATTTGTCAACCCAATGGAGG
TCTCAGGAAGGAGAACAAATTCAATGCAAGCGATAAGAGAAAAAGCCATG
AAATGATACCACTCCGGCGATTAAAGATATGTGAAAGGGTGGTTCACAAG
GGACTATAGATAGATTACAAAGGGGAAATGAAAAGGAGGAGGAGAAAGAA
CAAGAGGAGAGGGAAGGGGTTAACGGTATGAAAGTGAAAACCAAGGGACG
GACGGCCTGAAGTAGCCGTGTCGCCCCCCCCCCCCCGCTGTCTAGATAGA
GAACACACAAGCCACATCATGAAGGAGGAGAGAAAACATAAAGAAAAATT
TAAGAGAACACAGAAGACGACAACACACAACAGCCAGGTCCGCCATTTCA
CCCCCAGAATTAGCTTCGTTCTCTTCCTTTTCCTCCTGTACCAACATTCA
AACATGTGTAATTTGCGACAAAGTTCAATAAGGAAAGTCAAGAGACAAGA
CACAGGAAGGGAACCAACACCCCTTCACTCACATAAATGAAAAGAAGAAA
ACGAGAGCGCTTCCCGAGCACCAC back to topCoding sequence (CDS) from alignment at chr10:708443..711666- >NO10G02590.1 ID=NO10G02590.1|Name=NO10G02590.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr10:708443..711666- (Nannochloropsis oceanica)
ATGAAGTCCGCCCTCTTTGTGTCCTCCCTCCTTATGGGGGCCCAAGCGTT
CACGCCCACGCTGCCCCTCAACAACGCCTTTGTCCAACGCCAGGCTGCCC
GCGCCGAGCCGGCCCGTGCCGCCCGTGGACGAGGAGACATGGACATGAAG
TACCGCGTGGTAGTGGTGGGCGGTGGCCCCTCGGGCTCCTGCGCTGCCGA
GGAGATGGCGAAGGACAAGAATATCGAGACCGTCCTCCTGGAGCGCAAGA
TGGACAACGCCAAGCCCTGCGGTGGTGCTATCCCCCTCTGCATGGTGTCC
GAGTTTGACCTGCCCCCTGAGATCATCGACCGAAAGGTCCGCAAGATGAA
GATGATCAGCCCGACCAACCGCGAGGTGGACATTGGGCAGACGCTGAAGC
CCAATGAGTACATCGGTATGACCCGCCGCGAAGTTCTGGACGGATTCCTG
CGTCAACGTGCTGTGAACAACGGCGCGACGGCCATCAACGGCCTGGTTAC
CAAGGTGGAGCTCCCCACCACCGAGGGCGGGCGCTACAAGATTCACTACT
CCAACTTCGAGAAGGGAACGGGCGCTGCTGGTGTCCCGGAGATGATCGAG
GCCGATGTGATCATTGGTGCTGATGGTGCCAACTCCCGCGTGGCCAAGGC
GATCGATGCCGGCGAGTACAACTACGCGATTGCCTTCCAGGAGCGCATCA
AGATCTCAGAGGAGAAGATGCAGTTCTATGAGGAACTGGCGGAGATGTAT
GTGGGCGATGACGTGTCCCCTGATTTCTATGCGTGGGTCTTCCCCAAGTA
TGACCATGTGGGTGTCGGGACAGGGACGGTGATCAACCGACCTGCCATCA
AGATGTACCAGAAGGCCATCCGCGACCGTGCCGGTGACAAGATTGCCAAC
GGGAAGATCATCAAGGTGGAGGCTCACCCTATCCCCGAGCATCCCCGCCC
CAGGCGTGTGGTGGGCCGTGTAGCTCTCATTGGCGATGCTGCTGGTTATG
TGACCAAATGCTCGGGGGAGGGAATTTACTTTGCCGCCAAGTCCGGCCGT
ATGGCCGCGGCGTCCATCAGGGAGTTGATGGCAGGGGGGACAAGGCTACC
GACGGAGAAGGAGATCAAGGACACGTACATTAAGGACTACGACCGACTTT
ATGGTCCTACGTACACGGTGCTGGACATCTTGCAGAAGGTGTTTTACTCG
TCTAACGCAGCCAGGGAGGCGTTCGTGGAGTTGTGCGAGAGTGAGTACGT
GCAGAAGGTGACGTTCGACTCCTACCTGTACAAGCGTGTACAGGGCAACA
ACCCGGTGGAGGACATCAAGCTGTTGTTCAAGACCATTGGTGCCTTGATG
CGTGGCAATGCCTTGGCTCCCCCTGACAAGCCGGTCTACAACCCGGTGGA
GAGCTTGAAACGGTTGTAA back to top
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