NO10G01210.1, NO10G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01210.1
Unique NameNO10G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2293
Alignment locationchr10:359172..361985 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:359172..361985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01210.1 vs.
Match: EWM25381.1 (sporulation protein rmd1 [Nannochloropsis gaditana])

HSP 1 Score: 723.0 bits (1865), Expect = 7.100e-205
Identity = 404/589 (68.59%), Postives = 451/589 (76.57%), Query Frame = 0 
Query:    1 MSSSPPIIHDDAALSPPYQGYSKKHGSDDFSVATSDAEEGLRRRGSLEGLGLDLDGGHTSSPTAPSSSTTSSLMRQTAYQASGYHSDSAIPSYSHISPDRRRSMGSREMLDPAAEPLMGTDNDESDRERERHHHYSRRPSMDMGEVSCDDTHGRSRQAMLDFDKFRSSMEDWVEPRKSRWNRKVTRKRAKRPTTAVRKGRLAVYCVASELQTDQVLRYLLQRKKEKVLPGGEGREEEEEEEDEGG------------------------ILRTTNSSSLLLPMLR---GGKSNSSSGGVGAAVTGGGSSAGCTGGREEVKRNLMKRVEDTSALVGLNWRDKNYMGVVYTTNDDGKCDPLEVKHIFCFPYGCTVFWGCTKEEEELFISMLLPFAVEPVSVMEREESHDDFVYLYGDSPMILHYEITLSSNDPEEKLALSFSLAQSAKLFVFEDRVDGTITSTKHIPIHLAEFGKINVSRREISKLTGKVFLERNEVNLHSDILDTPEWFWEADLWEPRYVAFCKYLDLPNRINILNKRLDILRELLNVLETQLDNSHSTKLELIVIALIIVEVVLQVLEIALNDLLHLDR 563
            MSSSPP+ H  A  S PY  Y+  H  D  SV   DAEEG RRR   E           ++PTAPSSST SSLMRQ  YQ SGYHSDSAIP+ SH++P+RRR   SREMLDPAAEPL+GTD DESDRER+  HH+   PSM+ G  S +D +G + Q+MLDFD+FRS +E+WV+PRK RWNRKVTRK+ K+PT AVRKGRLAVYC+ASELQTDQ+ RYLLQRKKE V     G + +    D GG                         L TTNSSSLLLP+ +   GG+ +  +    + +    ++A    G +    +   +V DTS LVGLNWRDKN+MGV+YTT+DDGKCDPLEVKHIFCFPYGCTVFWGCTKEEEE FISML PFAVE VS MEREES+DDF Y YG SP ILHYEITL+SNDPEEKLALSFSLAQSAKLFVFEDRVDGTITSTKHIPIHLAEFGK NVSR+EISKLTGKVFLERNE+NLHSDILDTPEWFWEADLWEPRYV  CKYLDLPNR+NILNKRLDILRELLNVLETQLDNSHSTKLELIVIALIIVEVVLQVLEIALNDLLHL+R
Sbjct:    1 MSSSPPV-HYGATASLPYSDYN--HEDDYLSV---DAEEGRRRRDEEE-----------TTPTAPSSST-SSLMRQ--YQTSGYHSDSAIPTQSHMTPNRRRRTSSREMLDPAAEPLIGTDIDESDRERDGRHHHLHSPSMNHGRESYEDGNGFAVQSMLDFDQFRSPLEEWVQPRKPRWNRKVTRKKTKKPTIAVRKGRLAVYCIASELQTDQIQRYLLQRKKEMVPVDKGGHKGKGAGGDGGGGGYYGTNGGKAGSQHSYFAPPAPPTLSTTNSSSLLLPVPKKKEGGRGSHIAARCKSFLRATANAA--VSGVKAAPPSQSAKV-DTSDLVGLNWRDKNFMGVIYTTDDDGKCDPLEVKHIFCFPYGCTVFWGCTKEEEERFISMLTPFAVELVSDMEREESYDDFAYFYGSSPQILHYEITLTSNDPEEKLALSFSLAQSAKLFVFEDRVDGTITSTKHIPIHLAEFGKTNVSRKEISKLTGKVFLERNEINLHSDILDTPEWFWEADLWEPRYVGLCKYLDLPNRVNILNKRLDILRELLNVLETQLDNSHSTKLELIVIALIIVEVVLQVLEIALNDLLHLNR 566
The following BLAST results are available for this feature:
BLAST of NO10G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25381.17.100e-20568.59sporulation protein rmd1 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01210NO10G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01210.1NO10G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01210.1.cds1NO10G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01210.1.cds2NO10G01210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01210.1.cds3NO10G01210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01210.1.cds4NO10G01210.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01210.1 ID=NO10G01210.1|Name=NO10G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp
GTGAAAGACTCTCATCGGATGATCCCCGAGTTTTGAAGGACACGCTGTCA
CCCACCCACCTGCAGCCACACTGTTGTCGAGCGCTGCTCATCCCAACCAA
ACCATGCCATCAGTAATTTGACATGACAGTCTTGTGGGTACCGGGGCATG
GCGTTGCGTCCTCTTTTGAAGCCAAGAGAGTTGCTGCACACCCATTTGCC
CCCTCCCCTTCCTCTACTCGGACACGCACCAGTCTACATCGCTGCCCTGC
CCTGCCCTTGACGTCTGGCCGTCACCACCATCAGCGTCCTCTAAATGGTT
CCAGGGGCTCTGGCTTCCACCTTGCCTATGGACGTGCACCAACCCTCATT
CCTGTCCCTCTTATGCTACACCCTACATCCAACACAGGGAAGGAGAGGAC
GAGGAGTAGAGAGCACGCCCGCCTGCTAGCTGACACAAAACAGCAAGCAG
CAGCGGCCAAGCAAGCAACGTTGTTTACTTCTTTATTATTCGTATTCATT
CAGCCACAGTATCAATCATTGCGACGCCCACCAAAAACTCCCCTCCCAAG
CAACCCCTCTCGCACCCTCACCTTTTACCCTCCAGCAGCATCGAAATGTC
CTCTTCTCCCCCCATCATCCACGACGACGCTGCACTCTCTCCACCTTATC
AAGGGTACAGCAAGAAACATGGCTCAGACGACTTTAGCGTCGCTACCTCA
GATGCCGAAGAAGGCCTCAGGCGCAGGGGCAGCCTTGAGGGCCTTGGACT
AGATCTTGACGGAGGGCACACGTCGTCACCGACTGCTCCTTCCTCCTCCA
CGACCTCCTCGCTCATGCGCCAAACGGCGTATCAAGCCTCGGGATACCAC
TCAGACAGTGCGATTCCGAGTTATTCTCACATCAGTCCTGATCGAAGGAG
GAGCATGGGTTCGAGGGAGATGCTTGATCCGGCAGCAGAGCCCCTGATGG
GGACGGACAATGATGAGAGCGACAGGGAGCGGGAAAGGCATCACCACTAT
TCGCGTAGGCCGTCGATGGATATGGGGGAAGTGAGCTGTGATGATACTCA
TGGGAGGTCAAGGCAGGCGATGCTGGACTTTGATAAGTTCCGGAGTTCGA
TGGAAGACTGGGTGGAACCGAGAAAATCGCGATGGAACAGGAAGGTGACA
AGGAAAAGGGCGAAGAGGCCCACAACGGCAGTGAGGAAGGGACGGTTGGC
TGTTTATTGTGTGGCAAGTGAGTTGCAGACGGATCAGGTGCTCCGGTATT
TGTTGCAACGGAAGAAGGAGAAGGTTCTCCCGGGGGGGGAGGGGAGGGAG
GAGGAGGAGGAGGAGGAGGACGAGGGGGGGATATTACGCACAACGAATTC
GAGTTCGTTGTTGCTGCCGATGCTGAGGGGGGGGAAGAGCAATAGCAGCA
GCGGAGGGGTGGGGGCGGCAGTGACAGGCGGTGGCAGCAGCGCGGGCTGT
ACCGGAGGAAGGGAGGAGGTAAAGAGGAACTTGATGAAAAGGGTGGAGGA
CACCTCGGCTCTGGTCGGTCTAAATTGGCGCGACAAGAACTACATGGGCG
TGGTGTACACCACGAACGACGATGGTAAGTGCGACCCTTTGGAAGTGAAG
CACATCTTCTGTTTCCCTTACGGTTGCACGGTTTTCTGGGGCTGCACCAA
GGAGGAGGAAGAGCTCTTCATATCCATGCTTCTCCCGTTCGCCGTCGAGC
CCGTCTCAGTCATGGAGCGGGAGGAGAGCCACGATGATTTTGTGTACCTT
TACGGGGACTCTCCCATGATCCTTCACTATGAAATCACCCTCTCGAGCAA
CGACCCGGAGGAGAAGTTGGCGTTGAGTTTCTCCCTGGCCCAGAGCGCGA
AGCTGTTCGTGTTCGAAGACCGCGTCGACGGGACCATCACCAGCACCAAG
CACATCCCGATCCACCTGGCGGAGTTCGGGAAGATCAACGTGAGCCGGCG
GGAGATATCCAAATTGACGGGGAAGGTCTTCTTGGAGCGGAATGAAGTCA
ACCTCCACTCGGACATCCTTGACACCCCCGAATGGTTTTGGGAGGCGGAT
CTGTGGGAGCCGCGGTATGTGGCTTTCTGCAAGTATCTGGATTTGCCGAA
CCGGATAAACATTTTGAATAAACGGTTGGACATCCTGAGAGAGTTGCTTA
ATGTGCTCGAGACGCAACTGGATAACTCCCACTCCACGAAGCTGGAATTG
ATTGTCATCGCCCTCATTATCGTGGAGGTGGTGTTGCAGGTGCTTGAGAT
CGCCTTGAATGACCTCTTGCACCTGGACAGGTATCAGTACTAA
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protein sequence of NO10G01210.1

>NO10G01210.1-protein ID=NO10G01210.1-protein|Name=NO10G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=566bp
MSSSPPIIHDDAALSPPYQGYSKKHGSDDFSVATSDAEEGLRRRGSLEGL
GLDLDGGHTSSPTAPSSSTTSSLMRQTAYQASGYHSDSAIPSYSHISPDR
RRSMGSREMLDPAAEPLMGTDNDESDRERERHHHYSRRPSMDMGEVSCDD
THGRSRQAMLDFDKFRSSMEDWVEPRKSRWNRKVTRKRAKRPTTAVRKGR
LAVYCVASELQTDQVLRYLLQRKKEKVLPGGEGREEEEEEEDEGGILRTT
NSSSLLLPMLRGGKSNSSSGGVGAAVTGGGSSAGCTGGREEVKRNLMKRV
EDTSALVGLNWRDKNYMGVVYTTNDDGKCDPLEVKHIFCFPYGCTVFWGC
TKEEEELFISMLLPFAVEPVSVMEREESHDDFVYLYGDSPMILHYEITLS
SNDPEEKLALSFSLAQSAKLFVFEDRVDGTITSTKHIPIHLAEFGKINVS
RREISKLTGKVFLERNEVNLHSDILDTPEWFWEADLWEPRYVAFCKYLDL
PNRINILNKRLDILRELLNVLETQLDNSHSTKLELIVIALIIVEVVLQVL
EIALNDLLHLDRYQY*
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mRNA from alignment at chr10:359172..361985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01210.1 ID=NO10G01210.1|Name=NO10G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2814bp|location=Sequence derived from alignment at chr10:359172..361985+ (Nannochloropsis oceanica)
GTGAAAGACTCTCATCGGATGATCCCCGAGTTTTGAAGGACACGCTGTCA
CCCACCCACCTGCAGCCACACTGTTGTCGAGCGCTGCTCATCCCAACCAA
ACCATGCCATCAGTAATTTGACATGACAGTCTTGTGGGTACCGGGGCATG
GCGTTGCGTCCTCTTTTGAAGCCAAGAGAGTTGCTGCACACCCATTTGCC
CCCTCCCCTTCCTCTACTCGGACACGCACCAGTCTACATCGCTGCCCTGC
CCTGCCCTTGACGTCTGGCCGTCACCACCATCAGCGTCCTCTAAATGGTT
CCAGGGGCTCTGGCTTCCACCTTGCCTATGGACGTGCACCAACCCTCATT
CCTGTCCCTCTTATGCTACACCCTACATCCAACACAGGGAAGGAGAGGAC
GAGGAGTAGAGAGCACGCCCGCCTGCTAGCTGACACAAAACAGCAAGCAG
CAGCGGCCAAGCAAGCAACGTTGTTTACTTCTTTATTATTCGTATTCATT
CAGCCACAGTATCAATCATTGCGACGCCCACCAAAAACTCCCCTCCCAAG
CAACCCCTCTCGCACCCTCACCTTTTACCCTCCAGCAGCATCGAAATGTC
CTCTTCTCCCCCCATCATCCACGACGACGCTGCACTCTCTCCACCTTATC
AAGGGTACAGCAAGAAACATGGCTCAGACGACTTTAGCGTCGCTACCTCA
GATGCCGAAGAAGGCCTCAGGCGCAGGGGCAGCCTTGAGGGCCTTGGACT
AGATCTTGACGGAGGGCACACGTCGTCACCGACTGCTCCTTCCTCCTCCA
CGACCTCCTCGCTCATGCGCCAAACGGCGTATCAAGCCTCGGGATACCAC
TCAGACAGTGCGATTCCGAGTTATTCTCACATCAGTCCTGATCGAAGGAG
GAGCATGGGTTCGAGGGAGATGCTTGATCCGGCAGCAGAGCCCCTGATGG
GGACGGACAATGATGAGAGCGACAGGGAGCGGGAAAGGCATCACCACTAT
TCGCGTAGGCCGTCGATGGATATGGGGGAAGTGAGCTGTGATGATACTCA
TGGGAGGTCAAGGCAGGCGATGCTGGACTTTGATAAGTTCCGGAGTTCGA
TGGAAGACTGGGTGGAACCGAGAAAATCGCGATGGAACAGGAAGGTGACA
AGGAAAAGGGCGAAGAGGCCCACAACGGCAGTGAGGAAGGGACGGTTGGC
TGTTTATTGTGTGGCAAGTGAGTTGCAGACGGATCAGGTGCTCCGGTATT
TGTTGCAACGGAAGAAGGAGAAGGTTCTCCCGGGGGGGGAGGGGAGGGAG
GAGGAGGAGGAGGAGGAGGACGAGGGGGGGATATTACGGTACAAACGGGG
GAAATGGTGGGGGGGGGGATCTATATTCTTCTTTCGCGCCGCCTGCACCT
CCCACCTTGAGCACAACGAATTCGAGTTCGTTGTTGCTGCCGATGCTGAG
GGGGGGGAAGAGCAATAGCAGCAGCGGAGGGGTGGGGGCGGCAGTGACAG
GCGGTGGCAGCAGCGCGGGCTGTACCGGAGGAAGGGAGGAGGTAAAGAGG
AACTTGATGAAAAGGGTGGAGGACACCTCGGCTCTGGTCGGTCTAAATTG
GCGCGACAAGAACTACATGGTACGGAGAGAGGGAGGGAGGGAGGGAGGAA
GGAAGGGAGGGAGAGAGGGAGGAAAGGAGGAAGGAAGGGAGGGAGGGGGG
GAGATGGATTCATTTGTTTGTGTCGGACGAAGAGATTATGATAGATCGTG
TGTGCTCGAGCTTGATTATTTGTCACGATAGTCATACAGAGTTGCCTCGC
TTTCCCCTTCGGTCTTGTGTCTCACCCCTTCCTCCTGCCCTTCCTCCTTC
CCTCCCTCCCTCTTTTCCACCAACACAGGGCGTGGTGTACACCACGAACG
ACGATGGTAAGTGCGACCCTTTGGAAGTGAAGCACATCTTCTGTTTCCCT
TACGGTTGCACGGTTTTCTGGGGCTGCACCAAGGAGGAGGAAGAGCTCTT
CATATCCATGCTTCTCCCGTTCGCCGTCGAGCCCGTCTCAGTCATGGAGC
GGGAGGAGAGCCACGATGATTTTGTGTACCTTTACGGGGACTCTCCCATG
ATCCTTCACTATGAAATCACCCTCTCGAGCAACGACCCGGAGGAGAAGTT
GGCGTTGAGTTTCTCCCTGGCCCAGAGCGCGAAGCTGTTCGTGTTCGAAG
ACCGCGTCGACGGGACCATCACCAGCACCAAGCACATCCCGATCCACCTG
GCGGAGTTCGGGAAGATCAACGTGAGCCGGCGGGAGATATCCAAATTGAC
GGGGAAGGTCTTCTTGGAGCGGAATGAAGTCAACCTCCACTCGGACATCC
TTGACACCCCCGAATGGTTTTGGGAGGCGGATCTGTGGGAGCCGCGGTAT
GTGGCTTTCTGCAAGTATCTGGATTTGCCGAACCGGATAAACATTTTGAA
TAAACGGTTGGACATCCTGAGAGAGTTGCTTAATGTGCTCGAGACGCAAC
TGGATAACTCCCACTCCACGAAGGTGGGGAAGGAAGGGAGGGAGGAAGGG
AGGGAGGCAGAGGGGGTGGGGGATCCTCATCAAAACTTCACAACCCATCT
TCCCCTCCCCCCCGTTTCTTTTCATAACTATTGCCTTCTCCCGTTGATAC
TCACTCATCTTGACGATAAATTTCACGTCTCCTCATTCTTTCCCCCCCCC
TTCCCCCCACAGCTGGAATTGATTGTCATCGCCCTCATTATCGTGGAGGT
GGTGTTGCAGGTGCTTGAGATCGCCTTGAATGACCTCTTGCACCTGGACA
GGTATCAGTACTAA
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Coding sequence (CDS) from alignment at chr10:359172..361985+

>NO10G01210.1 ID=NO10G01210.1|Name=NO10G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=1698bp|location=Sequence derived from alignment at chr10:359172..361985+ (Nannochloropsis oceanica)
ATGTCCTCTTCTCCCCCCATCATCCACGACGACGCTGCACTCTCTCCACC
TTATCAAGGGTACAGCAAGAAACATGGCTCAGACGACTTTAGCGTCGCTA
CCTCAGATGCCGAAGAAGGCCTCAGGCGCAGGGGCAGCCTTGAGGGCCTT
GGACTAGATCTTGACGGAGGGCACACGTCGTCACCGACTGCTCCTTCCTC
CTCCACGACCTCCTCGCTCATGCGCCAAACGGCGTATCAAGCCTCGGGAT
ACCACTCAGACAGTGCGATTCCGAGTTATTCTCACATCAGTCCTGATCGA
AGGAGGAGCATGGGTTCGAGGGAGATGCTTGATCCGGCAGCAGAGCCCCT
GATGGGGACGGACAATGATGAGAGCGACAGGGAGCGGGAAAGGCATCACC
ACTATTCGCGTAGGCCGTCGATGGATATGGGGGAAGTGAGCTGTGATGAT
ACTCATGGGAGGTCAAGGCAGGCGATGCTGGACTTTGATAAGTTCCGGAG
TTCGATGGAAGACTGGGTGGAACCGAGAAAATCGCGATGGAACAGGAAGG
TGACAAGGAAAAGGGCGAAGAGGCCCACAACGGCAGTGAGGAAGGGACGG
TTGGCTGTTTATTGTGTGGCAAGTGAGTTGCAGACGGATCAGGTGCTCCG
GTATTTGTTGCAACGGAAGAAGGAGAAGGTTCTCCCGGGGGGGGAGGGGA
GGGAGGAGGAGGAGGAGGAGGAGGACGAGGGGGGGATATTACGCACAACG
AATTCGAGTTCGTTGTTGCTGCCGATGCTGAGGGGGGGGAAGAGCAATAG
CAGCAGCGGAGGGGTGGGGGCGGCAGTGACAGGCGGTGGCAGCAGCGCGG
GCTGTACCGGAGGAAGGGAGGAGGTAAAGAGGAACTTGATGAAAAGGGTG
GAGGACACCTCGGCTCTGGTCGGTCTAAATTGGCGCGACAAGAACTACAT
GGGCGTGGTGTACACCACGAACGACGATGGTAAGTGCGACCCTTTGGAAG
TGAAGCACATCTTCTGTTTCCCTTACGGTTGCACGGTTTTCTGGGGCTGC
ACCAAGGAGGAGGAAGAGCTCTTCATATCCATGCTTCTCCCGTTCGCCGT
CGAGCCCGTCTCAGTCATGGAGCGGGAGGAGAGCCACGATGATTTTGTGT
ACCTTTACGGGGACTCTCCCATGATCCTTCACTATGAAATCACCCTCTCG
AGCAACGACCCGGAGGAGAAGTTGGCGTTGAGTTTCTCCCTGGCCCAGAG
CGCGAAGCTGTTCGTGTTCGAAGACCGCGTCGACGGGACCATCACCAGCA
CCAAGCACATCCCGATCCACCTGGCGGAGTTCGGGAAGATCAACGTGAGC
CGGCGGGAGATATCCAAATTGACGGGGAAGGTCTTCTTGGAGCGGAATGA
AGTCAACCTCCACTCGGACATCCTTGACACCCCCGAATGGTTTTGGGAGG
CGGATCTGTGGGAGCCGCGGTATGTGGCTTTCTGCAAGTATCTGGATTTG
CCGAACCGGATAAACATTTTGAATAAACGGTTGGACATCCTGAGAGAGTT
GCTTAATGTGCTCGAGACGCAACTGGATAACTCCCACTCCACGAAGCTGG
AATTGATTGTCATCGCCCTCATTATCGTGGAGGTGGTGTTGCAGGTGCTT
GAGATCGCCTTGAATGACCTCTTGCACCTGGACAGGTATCAGTACTAA
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Synonyms
Publications