NO10G00100.2, NO10G00100.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00100.2
Unique NameNO10G00100.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2357
Alignment locationchr10:29963..32691 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:29963..32691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00100.2 vs.
Match: EWM25227.1 (Transmembrane transporter protein, chloroquine resistant [Nannochloropsis gaditana])

HSP 1 Score: 548.9 bits (1413), Expect = 1.600e-152
Identity = 290/448 (64.73%), Postives = 337/448 (75.22%), Query Frame = 0 
Query:   26 ASPRTKYGTLPCTPPSTATVAAHPASTLDSATVLSLALIVVLAVGSCNSLTYKIMYEAYGPKGAFFVSTGVNVLYVIYGGLLLYPRMYFSDSVTPAMQALPKHRFLIMGFLDSCGTFLAAMGAVYTPGSVQTLLNQTLIPITMLVSFLYLKTRFTLIQLGGAAFVLAGAGITVLPTFWEGHKGGGEGIGGRPAPSRWYANLIFFLSNVPVACSQVYKEKAFKRDRVDVLYLTQWVSVFQLLFGLGLAPLQALPGIGSAHGVPISSIPSSFRRSWQCFLQTPTSGCADQHPSPSLLLLGFCGVNLTFNTAGLFVSKHGSAILNVITYAVLLPITTLLFSLHPLMGAYTEPLRATTVVGLLVVVLGFYLYQEPVLDLEKRSMAEG------------------------REEVTAEEEEEGMKEGEWDMRVRVPSFQERVVAGLGPAVFQ 450
            A+  ++YG+       T   AA         ++LSLAL+VVL +GSCN+L YKIMY+ YG  GAFFVSTGVNVLY+IYGGLLLYPRM F+DS+TPAM+ALPK RF+IMGFLD CGTFLAAMGAVYTPGSVQTLLNQTLIP TM+VS  +L+T F+ +QL GAA VL GA +TVLP F         G G  P+ SRWYANL+FF SN+PVACSQVYKE+AFKRD VDVLYLTQWVSVFQ  FGL LAPLQALPGIGSAHGVP+SSIP++F  SW CFL+ PTS C  Q P+PSLLLL FC VNL FNT GL+VSKHGSA+LNVITYAVLLP+TTL+FSL PLMGA+TEPL A+TV+GLL+V+LGFYLYQEP+L L +R   +G                         EE   EEEEE  +E +  M + VPSFQERVVAGLGPA++Q
Sbjct:   12 ATAMSEYGSFA---KKTRVGAATGGPVAKCPSILSLALLVVLTLGSCNALVYKIMYQVYGSDGAFFVSTGVNVLYIIYGGLLLYPRMLFTDSITPAMKALPKRRFIIMGFLDCCGTFLAAMGAVYTPGSVQTLLNQTLIPTTMIVSACFLRTHFSNVQLAGAALVLMGAAVTVLPAFITAESDSNNGHGASPSQSRWYANLVFFASNLPVACSQVYKERAFKRDSVDVLYLTQWVSVFQFFFGLALAPLQALPGIGSAHGVPLSSIPTAFLESWDCFLEKPTSVCHGQWPAPSLLLLAFCAVNLVFNTGGLYVSKHGSAVLNVITYAVLLPVTTLIFSLRPLMGAFTEPLSASTVLGLLLVLLGFYLYQEPMLWLGRRDHGKGVDGGDEKGKVLREGLKEDGGGAQTVEEEEEEEEEEEDEEEQGTMGIHVPSFQERVVAGLGPAIYQ 456
The following BLAST results are available for this feature:
BLAST of NO10G00100.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25227.11.600e-15264.73Transmembrane transporter protein, chloroquine res... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00100NO10G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00100.2NO10G00100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00100.2.cds1NO10G00100.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00100.2.cds2NO10G00100.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00100.2.cds3NO10G00100.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00100.2 ID=NO10G00100.2|Name=NO10G00100.2|organism=Nannochloropsis oceanica|type=mRNA|length=2357bp
GTGTGCTGAACCTCTTATACCACTCGCTTATCCTCGCTCATTCCCCATGG
GGAAATTTATGTCAGCACAGGAAATCAGCACGGAAGGAGGCCACCCAATG
CCGAACGCATCAAATGCCGCCGCCTCTCCCAGAACCAAGTACGGCACCCT
CCCTTGCACGCCCCCCAGCACAGCCACCGTCGCTGCTCACCCTGCGTCTA
CCCTCGACTCCGCCACGGTCCTTTCCCTGGCCCTCATCGTGGTCCTGGCA
GTCGGCTCCTGCAATTCATTGACTTACAAAATCATGTACGAAGCCTACGG
GCCCAAGGGCGCTTTCTTTGTCTCAACGGGCGTCAATGTCCTGTATGTGA
TTTATGGAGGCCTCCTGCTCTACCCCCGCATGTATTTCTCCGACAGCGTC
ACCCCCGCGATGCAAGCCCTCCCCAAACATCGCTTTCTCATCATGGGCTT
CCTCGACAGCTGCGGCACCTTCTTAGCGGCCATGGGTGCCGTCTACACCC
CTGGAAGCGTGCAAACCTTGCTCAACCAAACCCTCATTCCCATCACCATG
CTTGTCTCCTTCCTCTACCTCAAGACGAGATTTACGCTCATCCAGCTCGG
AGGCGCGGCCTTTGTCCTGGCAGGGGCGGGTATCACAGTCTTACCCACCT
TCTGGGAGGGTCACAAGGGGGGCGGAGAAGGAATTGGAGGTAGACCGGCC
CCATCGCGATGGTATGCGAACCTGATTTTCTTCCTTAGCAACGTCCCCGT
GGCTTGCTCCCAAGTGTACAAGGAGAAGGCTTTCAAGCGGGACCGCGTCG
ACGTCCTCTACCTCACCCAGTGGGTCTCCGTCTTCCAACTCCTCTTCGGT
CTGGGCCTCGCCCCCCTCCAAGCCCTGCCTGGCATTGGCAGCGCGCATGG
CGTCCCCATTTCCTCTATCCCCTCCTCCTTCAGGCGCAGCTGGCAATGCT
TCCTGCAAACGCCCACGTCAGGCTGTGCCGACCAGCACCCGTCCCCCTCC
CTTCTCCTCCTTGGATTTTGCGGCGTTAACCTCACTTTCAACACGGCAGG
CCTGTTCGTCTCAAAGCACGGGTCCGCCATTCTTAATGTGATCACGTACG
CCGTACTCCTGCCCATTACCACCCTCCTCTTCTCCCTCCATCCCTTGATG
GGCGCCTACACCGAGCCTTTGCGAGCAACGACGGTGGTGGGGCTACTGGT
CGTCGTGCTCGGCTTCTATCTCTATCAGGAACCAGTCTTGGATCTGGAGA
AAAGGAGCATGGCAGAAGGGAGAGAAGAGGTGACGGCTGAGGAGGAGGAA
GAGGGGATGAAGGAGGGGGAATGGGACATGCGTGTGAGGGTGCCGTCGTT
TCAGGAGAGGGTAGTGGCAGGACTAGGGCCAGCTGTGTTCCAGCAGTCGC
ATGGGAGCCAAGAGTATAACGCGCGTTACCACCACCACCACCACCATGAC
ACTAAAACGGCGGTGGACGGCACGGCTCGAGAGGGTGTTTAGCAGTGTAA
AGACAATGTAGATCAAATGGTACAAATGTTGAGTATCAAGTTTGCTGGCG
TCATAATTTTCACTGGTCTTGGGATTCCATTGGTTACTTCATTCCACCAG
TCATTCCTGCTCCTTTCTCTCTGTCTTACAACTTTGACTGCTTGCGTCTC
TTCTTTGTCTTCCTTTCCTGACCCTCTTCCTCCGTACGATCTCTTTACAT
GCTTCTTTCTCCTCCCCCCCCCCTCTTTTTCCACTCCACCCCAACCCTCC
TTACTTAGCCGCCGTGCTTTCTGCCTCCGGATGCTCCTTCAACCATTTGG
GGCTATACACTGCAGGAACTGCGTCGATCAACCCCGCCATAATCAAATCA
TTCTCCGTCAGTCCTCCCACGGCATGCGTGTACAACACAATTTCCACCTC
CCTATAGCTCGTCAAGTGTAAGTCCGGGTGGTGGCCTTCCGCTTCGGCCA
CGGCCCCCACAGCGTTAAGGAAAGCAAGTGCGGCAGCGAAGTTCTTGGCG
ATGAACGCACGGGACAGGCGCTTGTGGTCGTCGCTTGCCTTCCACAAGGG
CAGAGAGGGAAGGACAGCCTGCACGCGCTCAAGCGGTACGGCGGGGAGGC
CGCCTTCGCATGGGACGCAATGCTTGTGAGCGTCCCGGGAACAGGTCTCG
CTCATGCTATTGGAGCTACTGGTGGCAGACGACAAAAACGCAGCAGCGGT
GGCAATTACGATAAAAATAAGGGAAACGCCGAGGTTTAGGTGCATGCACG
GCGGTGCTGAAGTGATGCTGTGTGTGAGCTGTTGCAGTGTGAGATGCTAT
GTGACAGCAGTGAAGTTGGAGGGCCATGCTCGTCGCCGAAAAGCATTTTT
TTTTTAA
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protein sequence of NO10G00100.2

>NO10G00100.2-protein ID=NO10G00100.2-protein|Name=NO10G00100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MGKFMSAQEISTEGGHPMPNASNAAASPRTKYGTLPCTPPSTATVAAHPA
STLDSATVLSLALIVVLAVGSCNSLTYKIMYEAYGPKGAFFVSTGVNVLY
VIYGGLLLYPRMYFSDSVTPAMQALPKHRFLIMGFLDSCGTFLAAMGAVY
TPGSVQTLLNQTLIPITMLVSFLYLKTRFTLIQLGGAAFVLAGAGITVLP
TFWEGHKGGGEGIGGRPAPSRWYANLIFFLSNVPVACSQVYKEKAFKRDR
VDVLYLTQWVSVFQLLFGLGLAPLQALPGIGSAHGVPISSIPSSFRRSWQ
CFLQTPTSGCADQHPSPSLLLLGFCGVNLTFNTAGLFVSKHGSAILNVIT
YAVLLPITTLLFSLHPLMGAYTEPLRATTVVGLLVVVLGFYLYQEPVLDL
EKRSMAEGREEVTAEEEEEGMKEGEWDMRVRVPSFQERVVAGLGPAVFQQ
SHGSQEYNARYHHHHHHDTKTAVDGTAREGV*
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mRNA from alignment at chr10:29963..32691+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00100.2 ID=NO10G00100.2|Name=NO10G00100.2|organism=Nannochloropsis oceanica|type=mRNA|length=2729bp|location=Sequence derived from alignment at chr10:29963..32691+ (Nannochloropsis oceanica)
GTGTGCTGAACCTCTTATACCACTCGCTTATCCTCGCTCATTCCCCATGG
GGAAATTTATGTCAGCACAGGAAATCAGCACGGAAGGAGGCCACCCAATG
CCGAACGCATCAAATGCCGCCGCCTCTCCCAGAACCAAGGTAAGCCGTCG
CCTCCTCTTCTAGTGCGTGGTGATTTGTGCAAAAGTGCAAGGCCTGTAGC
ACATGTTAAAGCTACAGAAGCAAAAAGAGAGGCCCAAAATACCTGTAATT
AATACCTTGCCCACCGCCTTAGCCCTTACCCTCCCTTAGTCTAGCACCCG
CCGCAACGCTAACCCTAACACTACACCTTACTCACAACCTTGTCTTCCCC
ATCTCTTCCCTATCCAACAGTACGGCACCCTCCCTTGCACGCCCCCCAGC
ACAGCCACCGTCGCTGCTCACCCTGCGTCTACCCTCGACTCCGCCACGGT
CCTTTCCCTGGCCCTCATCGTGGTCCTGGCAGTCGGCTCCTGCAATTCAT
TGACTTACAAAATCATGTACGAAGCCTACGGGCCCAAGGGCGCTTTCTTT
GTCTCAACGGGCGTCAATGTCCTGTATGTGATTTATGGAGGCCTCCTGCT
CTACCCCCGCATGTATTTCTCCGACAGCGTCACCCCCGCGATGCAAGCCC
TCCCCAAACATCGCTTTCTCATCATGGGCTTCCTCGACAGCTGCGGCACC
TTCTTAGCGGCCATGGGTGCCGTCTACACCCCTGGAAGCGTGCAAACCTT
GCTCAACCAAACCCTCATTCCCATCACCATGCTTGTCTCCTTCCTCTACC
TCAAGACGAGATTTACGCTCATCCAGCTCGGAGGCGCGGCCTTTGTCCTG
GCAGGGGCGGGTATCACAGTCTTACCCACCTTCTGGGAGGGTCACAAGGG
GGGCGGAGAAGGAATTGGAGGTAGACCGGCCCCATCGCGATGGTATGCGA
ACCTGATTTTCTTCCTTAGCAACGTCCCCGTGGCTTGCTCCCAAGTGGTA
AGGTCTACAAGGTGGAAAGGGGGAAGAAGGAAGGCAGGAAGATCAGGATG
TCGATTTCCACGACGAAGGTTTCAGCATCCATTCACACTCGTCTAGTCCT
CTCTTTCCTTAATCCATTCCTCATTTAATCGCCCACAGTACAAGGAGAAG
GCTTTCAAGCGGGACCGCGTCGACGTCCTCTACCTCACCCAGTGGGTCTC
CGTCTTCCAACTCCTCTTCGGTCTGGGCCTCGCCCCCCTCCAAGCCCTGC
CTGGCATTGGCAGCGCGCATGGCGTCCCCATTTCCTCTATCCCCTCCTCC
TTCAGGCGCAGCTGGCAATGCTTCCTGCAAACGCCCACGTCAGGCTGTGC
CGACCAGCACCCGTCCCCCTCCCTTCTCCTCCTTGGATTTTGCGGCGTTA
ACCTCACTTTCAACACGGCAGGCCTGTTCGTCTCAAAGCACGGGTCCGCC
ATTCTTAATGTGATCACGTACGCCGTACTCCTGCCCATTACCACCCTCCT
CTTCTCCCTCCATCCCTTGATGGGCGCCTACACCGAGCCTTTGCGAGCAA
CGACGGTGGTGGGGCTACTGGTCGTCGTGCTCGGCTTCTATCTCTATCAG
GAACCAGTCTTGGATCTGGAGAAAAGGAGCATGGCAGAAGGGAGAGAAGA
GGTGACGGCTGAGGAGGAGGAAGAGGGGATGAAGGAGGGGGAATGGGACA
TGCGTGTGAGGGTGCCGTCGTTTCAGGAGAGGGTAGTGGCAGGACTAGGG
CCAGCTGTGTTCCAGCAGTCGCATGGGAGCCAAGAGTATAACGCGCGTTA
CCACCACCACCACCACCATGACACTAAAACGGCGGTGGACGGCACGGCTC
GAGAGGGTGTTTAGCAGTGTAAAGACAATGTAGATCAAATGGTACAAATG
TTGAGTATCAAGTTTGCTGGCGTCATAATTTTCACTGGTCTTGGGATTCC
ATTGGTTACTTCATTCCACCAGTCATTCCTGCTCCTTTCTCTCTGTCTTA
CAACTTTGACTGCTTGCGTCTCTTCTTTGTCTTCCTTTCCTGACCCTCTT
CCTCCGTACGATCTCTTTACATGCTTCTTTCTCCTCCCCCCCCCCTCTTT
TTCCACTCCACCCCAACCCTCCTTACTTAGCCGCCGTGCTTTCTGCCTCC
GGATGCTCCTTCAACCATTTGGGGCTATACACTGCAGGAACTGCGTCGAT
CAACCCCGCCATAATCAAATCATTCTCCGTCAGTCCTCCCACGGCATGCG
TGTACAACACAATTTCCACCTCCCTATAGCTCGTCAAGTGTAAGTCCGGG
TGGTGGCCTTCCGCTTCGGCCACGGCCCCCACAGCGTTAAGGAAAGCAAG
TGCGGCAGCGAAGTTCTTGGCGATGAACGCACGGGACAGGCGCTTGTGGT
CGTCGCTTGCCTTCCACAAGGGCAGAGAGGGAAGGACAGCCTGCACGCGC
TCAAGCGGTACGGCGGGGAGGCCGCCTTCGCATGGGACGCAATGCTTGTG
AGCGTCCCGGGAACAGGTCTCGCTCATGCTATTGGAGCTACTGGTGGCAG
ACGACAAAAACGCAGCAGCGGTGGCAATTACGATAAAAATAAGGGAAACG
CCGAGGTTTAGGTGCATGCACGGCGGTGCTGAAGTGATGCTGTGTGTGAG
CTGTTGCAGTGTGAGATGCTATGTGACAGCAGTGAAGTTGGAGGGCCATG
CTCGTCGCCGAAAAGCATTTTTTTTTTAA
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Coding sequence (CDS) from alignment at chr10:29963..32691+

>NO10G00100.2 ID=NO10G00100.2|Name=NO10G00100.2|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at chr10:29963..32691+ (Nannochloropsis oceanica)
ATGGGGAAATTTATGTCAGCACAGGAAATCAGCACGGAAGGAGGCCACCC
AATGCCGAACGCATCAAATGCCGCCGCCTCTCCCAGAACCAAGTACGGCA
CCCTCCCTTGCACGCCCCCCAGCACAGCCACCGTCGCTGCTCACCCTGCG
TCTACCCTCGACTCCGCCACGGTCCTTTCCCTGGCCCTCATCGTGGTCCT
GGCAGTCGGCTCCTGCAATTCATTGACTTACAAAATCATGTACGAAGCCT
ACGGGCCCAAGGGCGCTTTCTTTGTCTCAACGGGCGTCAATGTCCTGTAT
GTGATTTATGGAGGCCTCCTGCTCTACCCCCGCATGTATTTCTCCGACAG
CGTCACCCCCGCGATGCAAGCCCTCCCCAAACATCGCTTTCTCATCATGG
GCTTCCTCGACAGCTGCGGCACCTTCTTAGCGGCCATGGGTGCCGTCTAC
ACCCCTGGAAGCGTGCAAACCTTGCTCAACCAAACCCTCATTCCCATCAC
CATGCTTGTCTCCTTCCTCTACCTCAAGACGAGATTTACGCTCATCCAGC
TCGGAGGCGCGGCCTTTGTCCTGGCAGGGGCGGGTATCACAGTCTTACCC
ACCTTCTGGGAGGGTCACAAGGGGGGCGGAGAAGGAATTGGAGGTAGACC
GGCCCCATCGCGATGGTATGCGAACCTGATTTTCTTCCTTAGCAACGTCC
CCGTGGCTTGCTCCCAAGTGTACAAGGAGAAGGCTTTCAAGCGGGACCGC
GTCGACGTCCTCTACCTCACCCAGTGGGTCTCCGTCTTCCAACTCCTCTT
CGGTCTGGGCCTCGCCCCCCTCCAAGCCCTGCCTGGCATTGGCAGCGCGC
ATGGCGTCCCCATTTCCTCTATCCCCTCCTCCTTCAGGCGCAGCTGGCAA
TGCTTCCTGCAAACGCCCACGTCAGGCTGTGCCGACCAGCACCCGTCCCC
CTCCCTTCTCCTCCTTGGATTTTGCGGCGTTAACCTCACTTTCAACACGG
CAGGCCTGTTCGTCTCAAAGCACGGGTCCGCCATTCTTAATGTGATCACG
TACGCCGTACTCCTGCCCATTACCACCCTCCTCTTCTCCCTCCATCCCTT
GATGGGCGCCTACACCGAGCCTTTGCGAGCAACGACGGTGGTGGGGCTAC
TGGTCGTCGTGCTCGGCTTCTATCTCTATCAGGAACCAGTCTTGGATCTG
GAGAAAAGGAGCATGGCAGAAGGGAGAGAAGAGGTGACGGCTGAGGAGGA
GGAAGAGGGGATGAAGGAGGGGGAATGGGACATGCGTGTGAGGGTGCCGT
CGTTTCAGGAGAGGGTAGTGGCAGGACTAGGGCCAGCTGTGTTCCAGCAG
TCGCATGGGAGCCAAGAGTATAACGCGCGTTACCACCACCACCACCACCA
TGACACTAAAACGGCGGTGGACGGCACGGCTCGAGAGGGTGTTTAG
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Synonyms
Publications