NO09G03560.1, NO09G03560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03560.1
Unique NameNO09G03560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2224
Alignment locationchr9:1021371..1023784 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1021371..1023784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03560.1 vs.
Match: EWM27456.1 (e3 ubiquitin-protein ligase rnf14 [Nannochloropsis gaditana])

HSP 1 Score: 841.6 bits (2173), Expect = 1.600e-240
Identity = 434/699 (62.09%), Postives = 512/699 (73.25%), Query Frame = 0 
Query:    1 MGEEEECREQQLLEVESLQAILGSSDHSHSGDGEATEIPGDASFQVRGDGTVREPFHLRCEVDVALPPNEVIDIVVVADSEEACGAYAEAVSPHSDSTSESRK---------------SQPPLTLRGIKYLPPVTLHLVMPLTYPLVAPPELSFECVWFDAQATARVRTELVRMWDEVYQGGPVVFSWLEWLQYELVDRLL-EEATSVNVREEEDKEGEKGKEAATGGAEAASEAGSRRRRLVLRGPPPSLPSTNNEEDYVD-DTKTSTSSCTSSTWPTRFRLILAHAYVQASAAFLRGTHTCYICFEEHPGHSFVTLQCGHWWCRPCLTTMASTYVGEGGQHLQWLVCPRPDCAAEITPDILKHDLLSSEEYERWERLSLLQALDKMGDVARCPRCQTPCLTEGG-KKEGGSEGGAVSG----GAAAGDLGECPQCFFVFCPQCQDAYHAGTPCYSSEARLKQVEAEIARLMASSHGGKSLAPSQNARLEKLRRAAEESLSRKVVEKNARSCPACGMSVEKVEGCNKMRCQCGVLWCWKCRKDISSEGYAHFREGAVGACNLWEAESLLAWQRQMMMMEGGREGGRVAGWGGG-----GGDLHGEMARMLQWGRGWDGGGGGGGEGGGRRRRRGEEV-EGGVKLVRCGACNAMNLKTDSNNHRRCGACRRNYCAVCGCCTFRKASDHFGGAKPCKQHS 672
            M EEEEC+EQQ+LEVE+LQAILG+        G+A     + SF VRGDG+   PF LRCEVD+ LP  E IDI+V   +       +E+   H DS+    +                 P L LRGIKYL P+TL+L +P TYP+  PPEL+ E +W D  ++ R++ EL RMW+E+Y GGPV++SW+EWL+++L++ LL E      V+E++  +   G   A    E  +     RR L+L+G PP    T +  D  D     +T +  + TW +RFR ++AHAY + SA FL+GTHTC+ICF+E PG SFVTLQCGHWWCR CL +MASTYV EGG HLQWLVCPRPDCA EITPD+L+H+LL+SEE+ RWERLSL QALD+M DVA CPRCQTPCLTEGG ++EGGS+ G V G         DLGECP C FVFCPQCQDAYHAGTPCYSSEARLKQVE+EIARLMAS+ GG++LAPSQN RLEKLRRAAEESLSRKVVEK+A+SCPACGMSV+K EGCNKMRCQCGVLWCWKCRKDIS+EGYAHF E A G CNLWE E+LLAWQRQM+MMEGG  G    G GGG     GGDLHGEM RMLQWGRGW+G G G G    R R RGE+  E GVKLVRCGAC+AMNLKTDSNNHRRCGACRR+YCAVCGC TFRKASDHFGG+KPC+QHS
Sbjct:    1 MSEEEECQEQQVLEVEALQAILGA--------GQAGVELDEVSFDVRGDGSTGSPFRLRCEVDIELPAQEAIDIIVTGGTRT-----SESYREHDDSSENDGEVNAEVACSKNTSAIDPSPQLELRGIKYLSPLTLYLALPSTYPVTCPPELTIEGLWVDEPSSRRIKAELTRMWEEIYHGGPVIYSWMEWLRHDLMEILLVEPILGREVKEKDANDTGTGASEAPRPGEGEALNDLSRRTLILQGSPPQALFTGHNVDEADWSLPKTTHAEVAPTWQSRFRHLVAHAYAKTSAVFLQGTHTCFICFDEQPGLSFVTLQCGHWWCRSCLRSMASTYVTEGGHHLQWLVCPRPDCALEITPDVLRHELLTSEEFARWERLSLQQALDRMEDVAPCPRCQTPCLTEGGRRREGGSDEGKVDGKGRSKTGGADLGECPTCNFVFCPQCQDAYHAGTPCYSSEARLKQVESEIARLMASTQGGRALAPSQNVRLEKLRRAAEESLSRKVVEKDAKSCPACGMSVQKTEGCNKMRCQCGVLWCWKCRKDISTEGYAHFSENATGGCNLWEREALLAWQRQMLMMEGGGMGN---GGGGGDRRRAGGDLHGEMVRMLQWGRGWEGEGPGEGRRRRRGRWRGEDANEDGVKLVRCGACHAMNLKTDSNNHRRCGACRRSYCAVCGCHTFRKASDHFGGSKPCRQHS 683
The following BLAST results are available for this feature:
BLAST of NO09G03560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27456.11.600e-24062.09e3 ubiquitin-protein ligase rnf14 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03560NO09G03560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03560.1NO09G03560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03560.1.cds1NO09G03560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03560.1.cds2NO09G03560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03560.1 ID=NO09G03560.1|Name=NO09G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2224bp
CAGGAAACACAGGAGGCATGGGCGAGGAAGAAGAGTGTCGGGAGCAGCAG
CTGCTAGAGGTGGAATCGCTCCAAGCCATTTTGGGAAGCAGTGACCACAG
TCATTCGGGGGATGGGGAGGCAACAGAGATCCCCGGCGACGCAAGCTTCC
AGGTGCGAGGTGATGGCACAGTCAGAGAACCATTCCACCTGCGCTGCGAG
GTAGATGTGGCCCTGCCTCCTAATGAAGTAATTGACATCGTGGTGGTGGC
TGACTCCGAAGAAGCCTGTGGTGCGTACGCAGAGGCTGTGAGTCCTCATT
CTGACTCCACCTCTGAGAGTCGTAAGTCTCAACCTCCGCTAACCTTGCGC
GGCATCAAATACCTCCCTCCAGTCACGCTCCATCTTGTCATGCCGCTTAC
TTATCCCTTGGTCGCCCCACCTGAACTCTCGTTTGAGTGTGTGTGGTTCG
ACGCGCAGGCGACCGCGCGGGTGAGAACGGAGCTAGTGCGCATGTGGGAT
GAGGTGTACCAAGGTGGACCCGTAGTTTTTTCTTGGTTGGAATGGCTGCA
ATATGAGCTCGTGGATAGGCTTCTAGAAGAAGCAACGTCTGTCAATGTAA
GAGAAGAGGAGGACAAAGAGGGGGAAAAAGGAAAGGAAGCAGCAACAGGT
GGAGCAGAAGCAGCAAGTGAGGCCGGGTCACGACGACGACGGCTCGTCTT
GCGAGGACCGCCGCCATCATTACCCTCAACCAACAACGAAGAAGACTACG
TAGATGATACTAAAACCTCAACTTCCTCTTGTACTTCGTCCACTTGGCCC
ACACGCTTCCGCCTTATTCTTGCCCACGCGTACGTCCAAGCGAGCGCCGC
CTTCCTTCGAGGCACACATACGTGCTACATTTGCTTCGAGGAGCACCCAG
GGCACTCCTTCGTGACCCTCCAGTGCGGTCATTGGTGGTGTCGACCGTGC
TTGACAACAATGGCGAGCACGTACGTCGGGGAGGGAGGGCAGCACTTGCA
GTGGTTGGTGTGTCCCCGTCCCGATTGTGCTGCAGAAATCACGCCCGATA
TATTGAAGCATGATTTGTTGTCAAGTGAGGAGTATGAACGATGGGAGCGC
TTGTCATTACTGCAGGCGTTGGACAAAATGGGAGATGTGGCCCGTTGCCC
GCGTTGCCAGACCCCATGCTTGACGGAAGGTGGGAAGAAGGAGGGAGGGA
GCGAGGGGGGAGCTGTTAGCGGTGGCGCCGCTGCAGGTGACCTGGGCGAA
TGCCCTCAGTGCTTTTTTGTCTTTTGTCCGCAGTGTCAGGATGCGTACCA
TGCAGGGACACCGTGCTATTCGTCAGAAGCGAGGCTCAAACAAGTGGAAG
CCGAAATAGCGCGTTTGATGGCTTCGAGCCACGGCGGGAAGTCCCTGGCC
CCCTCCCAGAACGCCCGGCTTGAAAAGCTGAGAAGGGCGGCAGAGGAGTC
CTTGAGTAGGAAAGTTGTGGAGAAGAACGCAAGGTCCTGTCCGGCTTGTG
GGATGAGTGTGGAGAAGGTGGAGGGGTGTAACAAGATGAGATGTCAATGC
GGCGTGCTCTGGTGCTGGAAATGCCGGAAAGACATTTCCTCTGAGGGTTA
CGCTCACTTTCGCGAAGGCGCCGTAGGGGCATGTAATTTGTGGGAGGCGG
AATCTTTGCTTGCCTGGCAGAGACAGATGATGATGATGGAGGGCGGGCGG
GAGGGAGGGAGGGTGGCAGGATGGGGGGGAGGAGGAGGGGATTTGCATGG
AGAGATGGCGAGAATGCTGCAGTGGGGTCGGGGGTGGGATGGAGGTGGTG
GAGGAGGAGGAGAAGGAGGGGGACGTCGGCGTCGACGGGGGGAGGAGGTG
GAGGGAGGAGTGAAATTAGTCAGGTGTGGGGCTTGCAATGCGATGAATTT
GAAAACGGACAGTAACAACCACAGGAGGTGCGGGGCGTGTCGAAGGAATT
ATTGCGCCGTATGCGGTTGTTGCACATTTCGAAAGGCAAGCGATCATTTT
GGGGGCGCCAAGCCCTGTAAGCAGCACTCGGGGGTGGGCTGAAAAAGGAA
AGGAGGACAGGGACGGAGGCGGGGAAGGAGGAAGGGAGGGTGGAATGTGA
ATGTGGGGCGCGTGTAGATGGGTGGAGGGAATAATGTAGAGACTGGCCAC
AGATAAATTCACTCAAAGAAGAGTAGGTTCGAAAGAAGGCAAAAACACTG
CTCCTTGAAAGGGCAACAGAAGCA
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protein sequence of NO09G03560.1

>NO09G03560.1-protein ID=NO09G03560.1-protein|Name=NO09G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=675bp
MGEEEECREQQLLEVESLQAILGSSDHSHSGDGEATEIPGDASFQVRGDG
TVREPFHLRCEVDVALPPNEVIDIVVVADSEEACGAYAEAVSPHSDSTSE
SRKSQPPLTLRGIKYLPPVTLHLVMPLTYPLVAPPELSFECVWFDAQATA
RVRTELVRMWDEVYQGGPVVFSWLEWLQYELVDRLLEEATSVNVREEEDK
EGEKGKEAATGGAEAASEAGSRRRRLVLRGPPPSLPSTNNEEDYVDDTKT
STSSCTSSTWPTRFRLILAHAYVQASAAFLRGTHTCYICFEEHPGHSFVT
LQCGHWWCRPCLTTMASTYVGEGGQHLQWLVCPRPDCAAEITPDILKHDL
LSSEEYERWERLSLLQALDKMGDVARCPRCQTPCLTEGGKKEGGSEGGAV
SGGAAAGDLGECPQCFFVFCPQCQDAYHAGTPCYSSEARLKQVEAEIARL
MASSHGGKSLAPSQNARLEKLRRAAEESLSRKVVEKNARSCPACGMSVEK
VEGCNKMRCQCGVLWCWKCRKDISSEGYAHFREGAVGACNLWEAESLLAW
QRQMMMMEGGREGGRVAGWGGGGGDLHGEMARMLQWGRGWDGGGGGGGEG
GGRRRRRGEEVEGGVKLVRCGACNAMNLKTDSNNHRRCGACRRNYCAVCG
CCTFRKASDHFGGAKPCKQHSGVG*
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mRNA from alignment at chr9:1021371..1023784+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03560.1 ID=NO09G03560.1|Name=NO09G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2414bp|location=Sequence derived from alignment at chr9:1021371..1023784+ (Nannochloropsis oceanica)
CAGGAAACACAGGAGGCATGGGCGAGGAAGAAGAGTGTCGGGAGCAGCAG
CTGCTAGAGGTGGAATCGCTCCAAGCCATTTTGGGAAGCAGTGACCACAG
TCATTCGGGGGATGGGGAGGCAACAGAGATCCCCGGCGACGCAAGCTTCC
AGGTGCGAGGTGATGGCACAGTCAGAGAACCATTCCACCTGCGCTGCGAG
GTAGATGTGGCCCTGCCTCCTAATGAAGTAATTGACATCGTGGTGGTGGC
TGACTCCGAAGAAGCCTGTGGTGCGTACGCAGAGGCTGTGAGTCCTCATT
CTGACTCCACCTCTGAGAGTCGTAAGTCTCAACCTCCGCTAACCTTGCGC
GGCATCAAATACCTCCCTCCAGTCACGCTCCATCTTGTCATGCCGCTTAC
TTATCCCTTGGTCGCCCCACCTGAACTCTCGTTTGAGTGTGTGTGGTTCG
ACGCGCAGGCGACCGCGCGGGTGAGAACGGAGCTAGTGCGCATGTGGGAT
GAGGTGTACCAAGGTGGACCCGTAGTTTTTTCTTGGTTGGAATGGCTGCA
ATATGAGCTCGTGGATAGGCTTCTAGAAGAAGCAACGTCTGTCAATGTAA
GAGAAGAGGAGGACAAAGAGGGGGAAAAAGGAAAGGAAGCAGCAACAGGT
GGAGCAGAAGCAGCAAGTGAGGCCGGGTCACGACGACGACGGCTCGTCTT
GCGAGGACCGCCGCCATCATTACCCTCAACCAACAACGAAGAAGACTACG
TAGATGATACTAAAACCTCAACTTCCTCTTGTACTTCGTCCACTTGGCCC
ACACGCTTCCGCCTTATTCTTGCCCACGCGTACGTCCAAGCGAGCGCCGC
CTTCCTTCGAGGCACACATACGTGCTACATTTGCTTCGAGGAGCACCCAG
GGCACTCCTTCGTGACCCTCCAGTGCGGTCATTGGTGGTGTCGACCGTGC
TTGACAACAATGGCGAGCACGTACGTCGGGGAGGGAGGGCAGCACTTGCA
GTGGTTGGTGTGTCCCCGTCCCGATTGTGCTGCAGAAATCACGCCCGATA
TATTGAAGCATGATTTGTTGTCAAGTGAGGAGTATGAACGATGGGAGCGC
TTGTCATTACTGCAGGCGTTGGACAAAATGGGAGATGTGGCCCGTTGCCC
GCGTTGCCAGACCCCATGCTTGACGGAAGGTGGGAAGAAGGAGGGAGGGA
GCGAGGGGGGAGCTGTTAGCGGTGGCGCCGCTGCAGGTGACCTGGGCGAA
TGCCCTCAGTGCTTTTTTGTCTTTTGTCCGCAGTGTCAGGATGCGTACCA
TGCAGGGACACCGTGCTATTCGTCAGAAGCGAGGCTCAAACAAGTGGAAG
CCGAAATAGCGCGTTTGATGGCTTCGAGCCACGGCGGGAAGTCCCTGGCC
CCCTCCCAGAACGCCCGGCTTGAAAAGCTGAGAAGGGCGGCAGAGGAGTC
CTTGAGTAGGAAAGTTGTGGAGAAGAACGCAAGGTCCTGTCCGGCTTGTG
GGATGAGTGTGGAGAAGGTGGAGGGGTGTAACAAGATGAGGTACGCTCGT
GGGTATAGAGAAGTGGCTGCGTCTGTGGTACAGAGAGGTGGTCGCGTCTC
TCATCCTCCGTCCGTCTCTCCCTCCGTTCCTCCATCCCTCCCTCCACGTG
CCATTTTGGATGCTTTCCAATTCCGTCATACTGTTCTTCATTATTTCCTC
CCTCTCTCCCTCCCTCCCCCTTGTCCGTAGATGTCAATGCGGCGTGCTCT
GGTGCTGGAAATGCCGGAAAGACATTTCCTCTGAGGGTTACGCTCACTTT
CGCGAAGGCGCCGTAGGGGCATGTAATTTGTGGGAGGCGGAATCTTTGCT
TGCCTGGCAGAGACAGATGATGATGATGGAGGGCGGGCGGGAGGGAGGGA
GGGTGGCAGGATGGGGGGGAGGAGGAGGGGATTTGCATGGAGAGATGGCG
AGAATGCTGCAGTGGGGTCGGGGGTGGGATGGAGGTGGTGGAGGAGGAGG
AGAAGGAGGGGGACGTCGGCGTCGACGGGGGGAGGAGGTGGAGGGAGGAG
TGAAATTAGTCAGGTGTGGGGCTTGCAATGCGATGAATTTGAAAACGGAC
AGTAACAACCACAGGAGGTGCGGGGCGTGTCGAAGGAATTATTGCGCCGT
ATGCGGTTGTTGCACATTTCGAAAGGCAAGCGATCATTTTGGGGGCGCCA
AGCCCTGTAAGCAGCACTCGGGGGTGGGCTGAAAAAGGAAAGGAGGACAG
GGACGGAGGCGGGGAAGGAGGAAGGGAGGGTGGAATGTGAATGTGGGGCG
CGTGTAGATGGGTGGAGGGAATAATGTAGAGACTGGCCACAGATAAATTC
ACTCAAAGAAGAGTAGGTTCGAAAGAAGGCAAAAACACTGCTCCTTGAAA
GGGCAACAGAAGCA
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Coding sequence (CDS) from alignment at chr9:1021371..1023784+

>NO09G03560.1 ID=NO09G03560.1|Name=NO09G03560.1|organism=Nannochloropsis oceanica|type=CDS|length=2025bp|location=Sequence derived from alignment at chr9:1021371..1023784+ (Nannochloropsis oceanica)
ATGGGCGAGGAAGAAGAGTGTCGGGAGCAGCAGCTGCTAGAGGTGGAATC
GCTCCAAGCCATTTTGGGAAGCAGTGACCACAGTCATTCGGGGGATGGGG
AGGCAACAGAGATCCCCGGCGACGCAAGCTTCCAGGTGCGAGGTGATGGC
ACAGTCAGAGAACCATTCCACCTGCGCTGCGAGGTAGATGTGGCCCTGCC
TCCTAATGAAGTAATTGACATCGTGGTGGTGGCTGACTCCGAAGAAGCCT
GTGGTGCGTACGCAGAGGCTGTGAGTCCTCATTCTGACTCCACCTCTGAG
AGTCGTAAGTCTCAACCTCCGCTAACCTTGCGCGGCATCAAATACCTCCC
TCCAGTCACGCTCCATCTTGTCATGCCGCTTACTTATCCCTTGGTCGCCC
CACCTGAACTCTCGTTTGAGTGTGTGTGGTTCGACGCGCAGGCGACCGCG
CGGGTGAGAACGGAGCTAGTGCGCATGTGGGATGAGGTGTACCAAGGTGG
ACCCGTAGTTTTTTCTTGGTTGGAATGGCTGCAATATGAGCTCGTGGATA
GGCTTCTAGAAGAAGCAACGTCTGTCAATGTAAGAGAAGAGGAGGACAAA
GAGGGGGAAAAAGGAAAGGAAGCAGCAACAGGTGGAGCAGAAGCAGCAAG
TGAGGCCGGGTCACGACGACGACGGCTCGTCTTGCGAGGACCGCCGCCAT
CATTACCCTCAACCAACAACGAAGAAGACTACGTAGATGATACTAAAACC
TCAACTTCCTCTTGTACTTCGTCCACTTGGCCCACACGCTTCCGCCTTAT
TCTTGCCCACGCGTACGTCCAAGCGAGCGCCGCCTTCCTTCGAGGCACAC
ATACGTGCTACATTTGCTTCGAGGAGCACCCAGGGCACTCCTTCGTGACC
CTCCAGTGCGGTCATTGGTGGTGTCGACCGTGCTTGACAACAATGGCGAG
CACGTACGTCGGGGAGGGAGGGCAGCACTTGCAGTGGTTGGTGTGTCCCC
GTCCCGATTGTGCTGCAGAAATCACGCCCGATATATTGAAGCATGATTTG
TTGTCAAGTGAGGAGTATGAACGATGGGAGCGCTTGTCATTACTGCAGGC
GTTGGACAAAATGGGAGATGTGGCCCGTTGCCCGCGTTGCCAGACCCCAT
GCTTGACGGAAGGTGGGAAGAAGGAGGGAGGGAGCGAGGGGGGAGCTGTT
AGCGGTGGCGCCGCTGCAGGTGACCTGGGCGAATGCCCTCAGTGCTTTTT
TGTCTTTTGTCCGCAGTGTCAGGATGCGTACCATGCAGGGACACCGTGCT
ATTCGTCAGAAGCGAGGCTCAAACAAGTGGAAGCCGAAATAGCGCGTTTG
ATGGCTTCGAGCCACGGCGGGAAGTCCCTGGCCCCCTCCCAGAACGCCCG
GCTTGAAAAGCTGAGAAGGGCGGCAGAGGAGTCCTTGAGTAGGAAAGTTG
TGGAGAAGAACGCAAGGTCCTGTCCGGCTTGTGGGATGAGTGTGGAGAAG
GTGGAGGGGTGTAACAAGATGAGATGTCAATGCGGCGTGCTCTGGTGCTG
GAAATGCCGGAAAGACATTTCCTCTGAGGGTTACGCTCACTTTCGCGAAG
GCGCCGTAGGGGCATGTAATTTGTGGGAGGCGGAATCTTTGCTTGCCTGG
CAGAGACAGATGATGATGATGGAGGGCGGGCGGGAGGGAGGGAGGGTGGC
AGGATGGGGGGGAGGAGGAGGGGATTTGCATGGAGAGATGGCGAGAATGC
TGCAGTGGGGTCGGGGGTGGGATGGAGGTGGTGGAGGAGGAGGAGAAGGA
GGGGGACGTCGGCGTCGACGGGGGGAGGAGGTGGAGGGAGGAGTGAAATT
AGTCAGGTGTGGGGCTTGCAATGCGATGAATTTGAAAACGGACAGTAACA
ACCACAGGAGGTGCGGGGCGTGTCGAAGGAATTATTGCGCCGTATGCGGT
TGTTGCACATTTCGAAAGGCAAGCGATCATTTTGGGGGCGCCAAGCCCTG
TAAGCAGCACTCGGGGGTGGGCTGA
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Synonyms
Publications