NO09G03550.4, NO09G03550.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03550.4
Unique NameNO09G03550.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2029
Alignment locationchr9:1014512..1017950 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1014512..1017950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G03550.4 vs.
Match: EWM27447.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 601.3 bits (1549), Expect = 2.100e-168
Identity = 293/382 (76.70%), Postives = 332/382 (86.91%), Query Frame = 0 
Query:    1 MDVTASAVEEMQVGEENVQWAYRLIQLLDADTRLFLADGLLRKVEAFVATGTGPLSQWARRVMVIPENAKRLAELRRRVEVCRQAARDMRSDDWHLAHTEDGIETFSRKDEGDNTLAWRTHGEIEDCPVVSQLAVLREPDHYHRWIPLMDKSKVVKRLGKIEQMVWFRVAGTGIPFVRDAVLHLYGCDASEENLIILSGASMPESEITDEMDVRPPKKKWNHARVDIKYFSIQLKILSPTHCKIDLIYNLDVKLTLVPQAIINYFSKFTCGWVIWFLFQEMRRIQTDPVHNPTAQLMRSDPFYANYLVPYCLHLAHTKGWAVPDVPAFEVDRDCTTAKAWRQEHHELLAKNRLLSGGGGEGGSGGEE------RGGGGQEGK 377
            M+V A+  + +QVGEENVQ AYRL+QLLDADTRLFLAD LL+K+EAF  TGTGP ++WA  VM   E+++RL ELRRRV+VCRQAARDM+S+DW LAHTE+GI+TF R+DEGDNTLAWRTHGEIEDCPVVSQLAVLRE DHYH WIPLMDKSKVVKRLGKIEQM+WFRVAG G+PFVRDAVLHLYGCDASEE+LIILSGAS+PE EIT+ M VRPPKKKWNHARVDIKYFSIQL+ILSPTH KIDLIY LDVK+  VPQ +INYFSKF CGWVIWFLFQEMRR+QTDPV +PTAQLMRS+PFYANYLVPYCL+LA+TKGW VP VPAFE+++DC +A+AWRQE+HELLAKNRLL   G E  SG +E      R  GG+  K
Sbjct:   37 MEVAANETQALQVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAFTRTGTGPQAEWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQSEDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEEDLIILSGASIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLL---GDEENSGIKESVDKEYRDSGGESRK 415
The following BLAST results are available for this feature:
BLAST of NO09G03550.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27447.12.100e-16876.70transmembrane protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03550NO09G03550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03550.4NO09G03550.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03550.4.cds1NO09G03550.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.4.cds2NO09G03550.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.4.cds3NO09G03550.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.4.cds4NO09G03550.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.4.cds5NO09G03550.4.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.4.cds6NO09G03550.4.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.4.cds7NO09G03550.4.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.4.cds8NO09G03550.4.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03550.4 ID=NO09G03550.4|Name=NO09G03550.4|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp
ACAGGTAACATACGGTCGTGATTATTTTTCCTCCATAGCGCCCATTGATG
TGCTCTTTCCGGCGGAAATAGCCGCAACACCAACACATCAAGCGGCATCG
CCTGCTACTGCGACTACCTGCATGCTGAAGGCACAATCTGCGTTTAGCCC
AGCATAACTACCTTGGAAAAGGAGAAAGCCTTCCTACACTATCTTATCCA
GGGCCTTCGGAGCCCGCATGGCCCCACGCGCACTCGGTACGTTATGTATG
TGGTTATGATGCTCAGTCTGCTCTGCCCTGTCTCTCCATCCTTCTCTCGT
TCGGCAAGGCAAGTCGAGACCCGCCCATTATGGCCCCCCTAGAGGCAAGC
AGCAGTCCATCCCAAGAGCATCAGCCAGCGTTGGACAAGGTGCGAATGTG
TATCTCTCTCTTATTCTTGTTATGCGGCTCTAAATTTTTTCTGTGTGGCT
GAGCAATACGCTTATTTCTCGCTTCCTCTCCCCTTCCCCAATCCCACCGT
ACGCACCCTAGCACGAAGCATGGCCCGACCCAGAAGAGGAAGGCAAGGAT
GGCAACTATCGCGGATACACCATGGATGTGACCGCAAGCGCAGTGGAGGA
AATGCAAGTGGGGGAGGAGAATGTGCAATGGGCCTATCGATTGATCCAGC
TCTTGGATGCCGACACTCGTCTGTTTTTGGCGGATGGGCTGCTTCGCAAG
GTGGAGGCATTCGTAGCTACCGGTACCGGCCCCCTCTCGCAGTGGGCGCG
ACGAGTGATGGTGATACCGGAGAATGCAAAGCGCTTGGCTGAACTCCGGC
GACGGGTGGAAGTGTGTCGACAGGCAGCGAGGGACATGCGCTCCGATGAT
TGGCATCTCGCTCACACGGAAGACGGGATTGAGACGTTTTCTCGAAAGGA
TGAAGGGGACAATACATTGGCGTGGCGGACTCATGGAGAGATTGAGGATT
GCCCGGTGGTGTCCCAGCTGGCCGTTCTGCGAGAGCCGGATCACTACCAC
CGATGGATTCCTCTTATGGACAAAAGCAAAGTCGTCAAGCGCCTCGGCAA
GATCGAGCAGATGGTCTGGTTCCGGGTAGCAGGCACCGGCATCCCCTTTG
TGCGTGACGCCGTCCTCCACCTGTACGGGTGCGACGCCTCGGAGGAAAAC
CTCATCATCCTGTCCGGTGCCTCCATGCCAGAGAGCGAGATAACGGACGA
GATGGACGTGAGGCCGCCCAAGAAAAAGTGGAACCATGCGCGGGTCGATA
TCAAGTACTTCAGCATCCAGCTCAAGATCCTGTCCCCCACGCACTGTAAG
ATCGACCTCATCTACAACCTGGACGTGAAGCTAACACTTGTCCCGCAGGC
CATCATCAACTACTTCTCCAAATTCACCTGCGGATGGGTGATATGGTTCC
TTTTCCAGGAGATGCGACGCATTCAGACAGATCCTGTACATAACCCCACG
GCGCAGCTCATGCGCTCGGATCCTTTCTATGCCAACTACCTCGTGCCTTA
CTGTCTTCACCTCGCCCACACCAAGGGGTGGGCGGTACCGGACGTACCCG
CGTTTGAAGTAGACCGTGATTGCACGACTGCCAAGGCCTGGAGGCAAGAG
CACCACGAGCTGCTCGCCAAAAATAGATTGCTTTCAGGAGGAGGAGGGGA
GGGGGGGAGTGGGGGAGAGGAGAGAGGAGGTGGGGGACAGGAAGGAAAGT
AGGGCGCGGTAGTGGCGGAAGGGTAGCTGTGATGGGAGTAGAAAGGAGGG
GGAAAGGGAGGGAGGGGGGGGGAGATAGAAGTGTACAGCCTGGATAAATG
AAGATGGTCAGCGACGGCGAAGATATATGGAGGTTGAAGAAGGAGGGGAA
GTGGGAGGGAGACCAAAAAGAGGCAAGAGTAGAGTAGAGTTGCGTAGATT
TTGATTGGATTGGAGTGCCTGGACGTGTAAGGGGAGTTCGAGAGGTAGGA
AGGAGGAGAAAAGAAAACGAGGCCGCCATGAGATGTTGGGCTGACAGATC
CGAGATAGATCCTCTATATCTCATACGCT
back to top

protein sequence of NO09G03550.4

>NO09G03550.4-protein ID=NO09G03550.4-protein|Name=NO09G03550.4|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MDVTASAVEEMQVGEENVQWAYRLIQLLDADTRLFLADGLLRKVEAFVAT
GTGPLSQWARRVMVIPENAKRLAELRRRVEVCRQAARDMRSDDWHLAHTE
DGIETFSRKDEGDNTLAWRTHGEIEDCPVVSQLAVLREPDHYHRWIPLMD
KSKVVKRLGKIEQMVWFRVAGTGIPFVRDAVLHLYGCDASEENLIILSGA
SMPESEITDEMDVRPPKKKWNHARVDIKYFSIQLKILSPTHCKIDLIYNL
DVKLTLVPQAIINYFSKFTCGWVIWFLFQEMRRIQTDPVHNPTAQLMRSD
PFYANYLVPYCLHLAHTKGWAVPDVPAFEVDRDCTTAKAWRQEHHELLAK
NRLLSGGGGEGGSGGEERGGGGQEGK*
back to top

mRNA from alignment at chr9:1014512..1017950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03550.4 ID=NO09G03550.4|Name=NO09G03550.4|organism=Nannochloropsis oceanica|type=mRNA|length=3439bp|location=Sequence derived from alignment at chr9:1014512..1017950- (Nannochloropsis oceanica)
ACAGGTAACATACGGTCGTGATTATTTTTCCTCCATAGCGCCCATTGATG
TGCTCTTTCCGGCGGAAATAGCCGCAACACCAACACATCAAGCGGCATCG
CCTGCTACTGCGACTACCTGCATGCTGAAGGCACAATCTGCGTTTAGCCC
AGCATAACTACCTTGGAAAAGGAGAAAGCCTTCCTACACTATCTTATCCA
GGGCCTTCGGAGCCCGCATGGCCCCACGCGCACTCGGTACGTTATGTATG
TGGTTATGATGCTCAGTCTGCTCTGCCCTGTCTCTCCATCCTTCTCTCGT
TCGGCAAGGCAAGTCGAGACCCGCCCATTATGGCCCCCCTAGAGGCAAGC
AGCAGTCCATCCCAAGAGCATCAGCCAGCGTTGGACAAGGTGCGAATGTG
TATCTCTCTCTTATTCTTGTTATGCGGCTCTAAATTTTTTCTGTGTGGCT
GAGCAATACGCTTATTTCTCGCTTCCTCTCCCCTTCCCCAATCCCACCGT
ACGCACCCTAGCACGAAGCATGGCCCGACCCAGAAGAGGAAGGCAAGGAT
GGCAACTATCGCGGATACACCATGGATGTGACCGCAAGCGCAGTGGAGGA
AATGCAAGTGGGGGAGGAGAATGTGCAATGGGCCTATCGATTGATCCAGC
TCTTGGATGCCGACACTCGTCTGTTTTTGGCGGATGGGCTGCTTCGCAAG
GTGGAGGCATTCGTAGCTACCGGTGAGTACATTAGAAAGCAGACACTTTT
TTTATGGATGGAGATAAAGGCATGGCATACGAACGAAAGCTCCGACATAG
GTTGCTCCATACTGAATAAATAGGAAGCAAAAGGGAGTTGACTCTTGATG
ATTTCATTCCCCTTATGTCCCAGGTACCGGCCCCCTCTCGCAGTGGGCGC
GACGAGTGATGGTGATACCGGAGAATGCAAAGCGCTTGGCTGAACTCCGG
CGACGGGTGGAAGTGTGTCGACAGGCAGCGAGGTTAGAAAGAAGGGCGTG
AAAGAGGGCGCTTCGACAAGCATTCACTCACCTCTCTAGCCTCCTCCGTC
TGCATCCTCACACAGGGACATGCGCTCCGATGATTGGCATCTCGCTCACA
CGGAAGACGGGATTGAGACGTTTTCTCGAAAGGATGAAGGGGACAATACA
TTGGCGTGGCGGACTCATGGAGAGATTGAGGATTGCCCGGTGGTGTCCCA
GGTAGAGGAAGGAGGGAGCGAGGGACGGACGGAGGGAGGGGAGGAAGAGA
GGAGGCACGTCGTGTACGTCGGCAGATATACAATTTCGACATTCATTTGG
TATCTAGCAGTACTCCAATTTATGTGTCATAGCCATAAGCGTGAAAACCC
TCCCTCTCTCCCTCCCTCCCCCTCACCACAGCTGGCCGTTCTGCGAGAGC
CGGATCACTACCACCGATGGATTCCTCTTATGGACAAAAGCAAAGTCGTC
AAGCGCCTCGGCAAGATCGAGCAGATGGTCTGGTTCCGGGTAGCAGGCAC
CGGGTATGCCCTCTCTCCCTTCCTTTGTCCCTCCCTTCCTCCTGCCCTTT
CGACCGTTTTTCCCCCTTCCGTCATTCCCTTTTCATTTCCTCCTTTCCTC
TCTCCTTCCCTCTTGGCTAGACATTCAACTGACATACCCTCTCTCTGTCT
CCCTCCTCCCCTCCCTCCCTCCCTCCCTCCCCCCCTCAGCATCCCCTTTG
TGCGTGACGCCGTCCTCCACCTGTACGGGTGCGACGCCTCGGAGGAAAAC
CTCATCATCCTGTCCGGTGCCTCCATGCCAGAGAGCGAGATAACGGACGA
GATGGACGTGAGGCCGCCCAAGAAAAAGTGGAACCATGCGCGGGTCGATA
TCAAGTACTTCAGCATCCAGGTATCTTTCCTTCCTTCCTCCTCACTTCTC
TTCCTCCCTCCTCGCTTTCCTTTCTTCCTCCTTGCTTTTTTCCTGTTCTT
TTCGATTTCCTTCCTCCCTCGTCACTTCCCTTCCCTCCTCCTCACTTCCT
CGCTACCCTTCCTTCATCCTCACTTTCCGGTCTTCCTCCTCACCCCCTGC
CTTTCCTCCTCTTTTTCTTTTTTCCCTCCTCGCTCTCCCTCTTTCCTCCT
CACTACCCTTCCTCGTTTTTCGCTTCCCTTCCCCCTCGCCCCGTGTTCAC
TTTTCTCCCCTTCCAGAACTTTGAACGCCTCGAAGCTCATCCCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCGTGCCTGCCTGTACAGCTCAAGATCCTG
TCCCCCACGCACTGTAAGATCGACCTCATCTACAACCTGGACGTGAAGCT
AACACTTGTCCCGCAGGCCATCATCAACTACTTCTCCAAATTCACCTGCG
GATGGGTGATATGGTTCCTTTTCCAGGAGGTGCGTCAAAGGCGTTATAAC
ACATCCCGTCTCAGGGGGGAGGGAGGGAGGAAGGGAGGAAAGGAGGTTTC
TCCTGCATTCTCGAATCTGCACGCCTTCCCTCTGAGCTGCTCTCCCTCCC
TGCCTCCCTCCCTCCCTCCCCCCCCCTCATCTGCCCATAGATGCGACGCA
TTCAGACAGATCCTGTACATAACCCCACGGCGCAGCTCATGCGCTCGGAT
CCTTTCTATGCCAACTACCTCGTGCCTTACTGTCTTCACCTCGCCCACAC
CAAGGTAGGCAGCGTCATCTCGCTCCTTCTCCTTCCTCCCTCCATTCTTG
GACCGTTACATTCTGTACACACATCTGATATTTCTTTTCATCCCTTTTCT
TCACCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTTCTGATC
TCTTCTCGCCAATTTTGCGGGTTTGAGCTAGAGGCTGGATTTCTCCGCTT
GACCCACTCCCTCCTTCTCTCTCTCTTTCCTACCTTCTCCCCTCCCTCCT
TCTCTCCCTCCCTCCTTCCTTCCTTCCCTCCCTAGGGGTGGGCGGTACCG
GACGTACCCGCGTTTGAAGTAGACCGTGATTGCACGACTGCCAAGGCCTG
GAGGCAAGAGCACCACGAGCTGCTCGCCAAAAATAGATTGCTTTCAGGAG
GAGGAGGGGAGGGGGGGAGTGGGGGAGAGGAGAGAGGAGGTGGGGGACAG
GAAGGAAAGTAGGGCGCGGTAGTGGCGGAAGGGTAGCTGTGATGGGAGTA
GAAAGGAGGGGGAAAGGGAGGGAGGGGGGGGGAGATAGAAGTGTACAGCC
TGGATAAATGAAGATGGTCAGCGACGGCGAAGATATATGGAGGTTGAAGA
AGGAGGGGAAGTGGGAGGGAGACCAAAAAGAGGCAAGAGTAGAGTAGAGT
TGCGTAGATTTTGATTGGATTGGAGTGCCTGGACGTGTAAGGGGAGTTCG
AGAGGTAGGAAGGAGGAGAAAAGAAAACGAGGCCGCCATGAGATGTTGGG
CTGACAGATCCGAGATAGATCCTCTATATCTCATACGCT
back to top

Coding sequence (CDS) from alignment at chr9:1014512..1017950-

>NO09G03550.4 ID=NO09G03550.4|Name=NO09G03550.4|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr9:1014512..1017950- (Nannochloropsis oceanica)
ATGGATGTGACCGCAAGCGCAGTGGAGGAAATGCAAGTGGGGGAGGAGAA
TGTGCAATGGGCCTATCGATTGATCCAGCTCTTGGATGCCGACACTCGTC
TGTTTTTGGCGGATGGGCTGCTTCGCAAGGTGGAGGCATTCGTAGCTACC
GGTACCGGCCCCCTCTCGCAGTGGGCGCGACGAGTGATGGTGATACCGGA
GAATGCAAAGCGCTTGGCTGAACTCCGGCGACGGGTGGAAGTGTGTCGAC
AGGCAGCGAGGGACATGCGCTCCGATGATTGGCATCTCGCTCACACGGAA
GACGGGATTGAGACGTTTTCTCGAAAGGATGAAGGGGACAATACATTGGC
GTGGCGGACTCATGGAGAGATTGAGGATTGCCCGGTGGTGTCCCAGCTGG
CCGTTCTGCGAGAGCCGGATCACTACCACCGATGGATTCCTCTTATGGAC
AAAAGCAAAGTCGTCAAGCGCCTCGGCAAGATCGAGCAGATGGTCTGGTT
CCGGGTAGCAGGCACCGGCATCCCCTTTGTGCGTGACGCCGTCCTCCACC
TGTACGGGTGCGACGCCTCGGAGGAAAACCTCATCATCCTGTCCGGTGCC
TCCATGCCAGAGAGCGAGATAACGGACGAGATGGACGTGAGGCCGCCCAA
GAAAAAGTGGAACCATGCGCGGGTCGATATCAAGTACTTCAGCATCCAGC
TCAAGATCCTGTCCCCCACGCACTGTAAGATCGACCTCATCTACAACCTG
GACGTGAAGCTAACACTTGTCCCGCAGGCCATCATCAACTACTTCTCCAA
ATTCACCTGCGGATGGGTGATATGGTTCCTTTTCCAGGAGATGCGACGCA
TTCAGACAGATCCTGTACATAACCCCACGGCGCAGCTCATGCGCTCGGAT
CCTTTCTATGCCAACTACCTCGTGCCTTACTGTCTTCACCTCGCCCACAC
CAAGGGGTGGGCGGTACCGGACGTACCCGCGTTTGAAGTAGACCGTGATT
GCACGACTGCCAAGGCCTGGAGGCAAGAGCACCACGAGCTGCTCGCCAAA
AATAGATTGCTTTCAGGAGGAGGAGGGGAGGGGGGGAGTGGGGGAGAGGA
GAGAGGAGGTGGGGGACAGGAAGGAAAGTAG
back to top
Synonyms
Publications