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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:1014512..1017950 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03550.1 vs.
Match: EWM27447.1 (transmembrane protein [Nannochloropsis gaditana]) HSP 1 Score: 584.3 bits (1505), Expect = 2.600e-163 Identity = 274/347 (78.96%), Postives = 312/347 (89.91%), Query Frame = 0
Query: 12 QEHQPALDKHEAWPDPEEEGKDGNYRGYTMDVTASAVEEMQVGEENVQWAYRLIQLLDADTRLFLADGLLRKVEAFVATGTGPLSQWARRVMVIPENAKRLAELRRRVEVCRQAARDMRSDDWHLAHTEDGIETFSRKDEGDNTLAWRTHGEIEDCPVVSQLAVLREPDHYHRWIPLMDKSKVVKRLGKIEQMVWFRVAGTGIPFVRDAVLHLYGCDASEENLIILSGASMPESEITDEMDVRPPKKKWNHARVDIKYFSIQLKILSPTHCKIDLIYNLDVKLTLVPQAIINYFSKFTCGWVIWFLFQEMRRIQTDPVHNPTAQLMRSDPFYANYLVPYCLHLAHTK 359
QE +++H+ WPDPE+EG+DG+YRGYTM+V A+ + +QVGEENVQ AYRL+QLLDADTRLFLAD LL+K+EAF TGTGP ++WA VM E+++RL ELRRRV+VCRQAARDM+S+DW LAHTE+GI+TF R+DEGDNTLAWRTHGEIEDCPVVSQLAVLRE DHYH WIPLMDKSKVVKRLGKIEQM+WFRVAG G+PFVRDAVLHLYGCDASEE+LIILSGAS+PE EIT+ M VRPPKKKWNHARVDIKYFSIQL+ILSPTH KIDLIY LDVK+ VPQ +INYFSKF CGWVIWFLFQEMRR+QTDPV +PTAQLMRS+PFYANYLVPYCL+LA+TK
Sbjct: 8 QERISFVNQHQPWPDPEKEGRDGSYRGYTMEVAANETQALQVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAFTRTGTGPQAEWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQSEDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEEDLIILSGASIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTK 354
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03550.1 ID=NO09G03550.1|Name=NO09G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2011bp
ACAGGTAACATACGGTCGTGATTATTTTTCCTCCATAGCGCCCATTGATG
TGCTCTTTCCGGCGGAAATAGCCGCAACACCAACACATCAAGCGGCATCG
CCTGCTACTGCGACTACCTGCATGCTGAAGGCACAATCTGCGTTTAGCCC
AGCATAACTACCTTGGAAAAGGAGAAAGCCTTCCTACACTATCTTATCCA
GGGCCTTCGGAGCCCGCATGGCCCCACGCGCACTCGGTACGTTATGTATG
TGGTTATGATGCTCAGTCTGCTCTGCCCTGTCTCTCCATCCTTCTCTCGT
TCGGCAAGGCAAGTCGAGACCCGCCCATTATGGCCCCCCTAGAGGCAAGC
AGCAGTCCATCCCAAGAGCATCAGCCAGCGTTGGACAAGCACGAAGCATG
GCCCGACCCAGAAGAGGAAGGCAAGGATGGCAACTATCGCGGATACACCA
TGGATGTGACCGCAAGCGCAGTGGAGGAAATGCAAGTGGGGGAGGAGAAT
GTGCAATGGGCCTATCGATTGATCCAGCTCTTGGATGCCGACACTCGTCT
GTTTTTGGCGGATGGGCTGCTTCGCAAGGTGGAGGCATTCGTAGCTACCG
GTACCGGCCCCCTCTCGCAGTGGGCGCGACGAGTGATGGTGATACCGGAG
AATGCAAAGCGCTTGGCTGAACTCCGGCGACGGGTGGAAGTGTGTCGACA
GGCAGCGAGGGACATGCGCTCCGATGATTGGCATCTCGCTCACACGGAAG
ACGGGATTGAGACGTTTTCTCGAAAGGATGAAGGGGACAATACATTGGCG
TGGCGGACTCATGGAGAGATTGAGGATTGCCCGGTGGTGTCCCAGCTGGC
CGTTCTGCGAGAGCCGGATCACTACCACCGATGGATTCCTCTTATGGACA
AAAGCAAAGTCGTCAAGCGCCTCGGCAAGATCGAGCAGATGGTCTGGTTC
CGGGTAGCAGGCACCGGCATCCCCTTTGTGCGTGACGCCGTCCTCCACCT
GTACGGGTGCGACGCCTCGGAGGAAAACCTCATCATCCTGTCCGGTGCCT
CCATGCCAGAGAGCGAGATAACGGACGAGATGGACGTGAGGCCGCCCAAG
AAAAAGTGGAACCATGCGCGGGTCGATATCAAGTACTTCAGCATCCAGCT
CAAGATCCTGTCCCCCACGCACTGTAAGATCGACCTCATCTACAACCTGG
ACGTGAAGCTAACACTTGTCCCGCAGGCCATCATCAACTACTTCTCCAAA
TTCACCTGCGGATGGGTGATATGGTTCCTTTTCCAGGAGATGCGACGCAT
TCAGACAGATCCTGTACATAACCCCACGGCGCAGCTCATGCGCTCGGATC
CTTTCTATGCCAACTACCTCGTGCCTTACTGTCTTCACCTCGCCCACACC
AAGAGGCTGGATTTCTCCGCTTGACCCACTCCCTCCTTCTCTCTCTCTTT
CCTACCTTCTCCCCTCCCTCCTTCTCTCCCTCCCTCCTTCCTTCCTTCCC
TCCCTAGGGGTGGGCGGTACCGGACGTACCCGCGTTTGAAGTAGACCGTG
ATTGCACGACTGCCAAGGCCTGGAGGCAAGAGCACCACGAGCTGCTCGCC
AAAAATAGATTGCTTTCAGGAGGAGGAGGGGAGGGGGGGAGTGGGGGAGA
GGAGAGAGGAGGTGGGGGACAGGAAGGAAAGTAGGGCGCGGTAGTGGCGG
AAGGGTAGCTGTGATGGGAGTAGAAAGGAGGGGGAAAGGGAGGGAGGGGG
GGGGAGATAGAAGTGTACAGCCTGGATAAATGAAGATGGTCAGCGACGGC
GAAGATATATGGAGGTTGAAGAAGGAGGGGAAGTGGGAGGGAGACCAAAA
AGAGGCAAGAGTAGAGTAGAGTTGCGTAGATTTTGATTGGATTGGAGTGC
CTGGACGTGTAAGGGGAGTTCGAGAGGTAGGAAGGAGGAGAAAAGAAAAC
GAGGCCGCCATGAGATGTTGGGCTGACAGATCCGAGATAGATCCTCTATA
TCTCATACGCT back to topprotein sequence of NO09G03550.1 >NO09G03550.1-protein ID=NO09G03550.1-protein|Name=NO09G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MAPLEASSSPSQEHQPALDKHEAWPDPEEEGKDGNYRGYTMDVTASAVEE
MQVGEENVQWAYRLIQLLDADTRLFLADGLLRKVEAFVATGTGPLSQWAR
RVMVIPENAKRLAELRRRVEVCRQAARDMRSDDWHLAHTEDGIETFSRKD
EGDNTLAWRTHGEIEDCPVVSQLAVLREPDHYHRWIPLMDKSKVVKRLGK
IEQMVWFRVAGTGIPFVRDAVLHLYGCDASEENLIILSGASMPESEITDE
MDVRPPKKKWNHARVDIKYFSIQLKILSPTHCKIDLIYNLDVKLTLVPQA
IINYFSKFTCGWVIWFLFQEMRRIQTDPVHNPTAQLMRSDPFYANYLVPY
CLHLAHTKRLDFSA* back to topmRNA from alignment at chr9:1014512..1017950- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03550.1 ID=NO09G03550.1|Name=NO09G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=3439bp|location=Sequence derived from alignment at chr9:1014512..1017950- (Nannochloropsis oceanica)
ACAGGTAACATACGGTCGTGATTATTTTTCCTCCATAGCGCCCATTGATG
TGCTCTTTCCGGCGGAAATAGCCGCAACACCAACACATCAAGCGGCATCG
CCTGCTACTGCGACTACCTGCATGCTGAAGGCACAATCTGCGTTTAGCCC
AGCATAACTACCTTGGAAAAGGAGAAAGCCTTCCTACACTATCTTATCCA
GGGCCTTCGGAGCCCGCATGGCCCCACGCGCACTCGGTACGTTATGTATG
TGGTTATGATGCTCAGTCTGCTCTGCCCTGTCTCTCCATCCTTCTCTCGT
TCGGCAAGGCAAGTCGAGACCCGCCCATTATGGCCCCCCTAGAGGCAAGC
AGCAGTCCATCCCAAGAGCATCAGCCAGCGTTGGACAAGGTGCGAATGTG
TATCTCTCTCTTATTCTTGTTATGCGGCTCTAAATTTTTTCTGTGTGGCT
GAGCAATACGCTTATTTCTCGCTTCCTCTCCCCTTCCCCAATCCCACCGT
ACGCACCCTAGCACGAAGCATGGCCCGACCCAGAAGAGGAAGGCAAGGAT
GGCAACTATCGCGGATACACCATGGATGTGACCGCAAGCGCAGTGGAGGA
AATGCAAGTGGGGGAGGAGAATGTGCAATGGGCCTATCGATTGATCCAGC
TCTTGGATGCCGACACTCGTCTGTTTTTGGCGGATGGGCTGCTTCGCAAG
GTGGAGGCATTCGTAGCTACCGGTGAGTACATTAGAAAGCAGACACTTTT
TTTATGGATGGAGATAAAGGCATGGCATACGAACGAAAGCTCCGACATAG
GTTGCTCCATACTGAATAAATAGGAAGCAAAAGGGAGTTGACTCTTGATG
ATTTCATTCCCCTTATGTCCCAGGTACCGGCCCCCTCTCGCAGTGGGCGC
GACGAGTGATGGTGATACCGGAGAATGCAAAGCGCTTGGCTGAACTCCGG
CGACGGGTGGAAGTGTGTCGACAGGCAGCGAGGTTAGAAAGAAGGGCGTG
AAAGAGGGCGCTTCGACAAGCATTCACTCACCTCTCTAGCCTCCTCCGTC
TGCATCCTCACACAGGGACATGCGCTCCGATGATTGGCATCTCGCTCACA
CGGAAGACGGGATTGAGACGTTTTCTCGAAAGGATGAAGGGGACAATACA
TTGGCGTGGCGGACTCATGGAGAGATTGAGGATTGCCCGGTGGTGTCCCA
GGTAGAGGAAGGAGGGAGCGAGGGACGGACGGAGGGAGGGGAGGAAGAGA
GGAGGCACGTCGTGTACGTCGGCAGATATACAATTTCGACATTCATTTGG
TATCTAGCAGTACTCCAATTTATGTGTCATAGCCATAAGCGTGAAAACCC
TCCCTCTCTCCCTCCCTCCCCCTCACCACAGCTGGCCGTTCTGCGAGAGC
CGGATCACTACCACCGATGGATTCCTCTTATGGACAAAAGCAAAGTCGTC
AAGCGCCTCGGCAAGATCGAGCAGATGGTCTGGTTCCGGGTAGCAGGCAC
CGGGTATGCCCTCTCTCCCTTCCTTTGTCCCTCCCTTCCTCCTGCCCTTT
CGACCGTTTTTCCCCCTTCCGTCATTCCCTTTTCATTTCCTCCTTTCCTC
TCTCCTTCCCTCTTGGCTAGACATTCAACTGACATACCCTCTCTCTGTCT
CCCTCCTCCCCTCCCTCCCTCCCTCCCTCCCCCCCTCAGCATCCCCTTTG
TGCGTGACGCCGTCCTCCACCTGTACGGGTGCGACGCCTCGGAGGAAAAC
CTCATCATCCTGTCCGGTGCCTCCATGCCAGAGAGCGAGATAACGGACGA
GATGGACGTGAGGCCGCCCAAGAAAAAGTGGAACCATGCGCGGGTCGATA
TCAAGTACTTCAGCATCCAGGTATCTTTCCTTCCTTCCTCCTCACTTCTC
TTCCTCCCTCCTCGCTTTCCTTTCTTCCTCCTTGCTTTTTTCCTGTTCTT
TTCGATTTCCTTCCTCCCTCGTCACTTCCCTTCCCTCCTCCTCACTTCCT
CGCTACCCTTCCTTCATCCTCACTTTCCGGTCTTCCTCCTCACCCCCTGC
CTTTCCTCCTCTTTTTCTTTTTTCCCTCCTCGCTCTCCCTCTTTCCTCCT
CACTACCCTTCCTCGTTTTTCGCTTCCCTTCCCCCTCGCCCCGTGTTCAC
TTTTCTCCCCTTCCAGAACTTTGAACGCCTCGAAGCTCATCCCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCGTGCCTGCCTGTACAGCTCAAGATCCTG
TCCCCCACGCACTGTAAGATCGACCTCATCTACAACCTGGACGTGAAGCT
AACACTTGTCCCGCAGGCCATCATCAACTACTTCTCCAAATTCACCTGCG
GATGGGTGATATGGTTCCTTTTCCAGGAGGTGCGTCAAAGGCGTTATAAC
ACATCCCGTCTCAGGGGGGAGGGAGGGAGGAAGGGAGGAAAGGAGGTTTC
TCCTGCATTCTCGAATCTGCACGCCTTCCCTCTGAGCTGCTCTCCCTCCC
TGCCTCCCTCCCTCCCTCCCCCCCCCTCATCTGCCCATAGATGCGACGCA
TTCAGACAGATCCTGTACATAACCCCACGGCGCAGCTCATGCGCTCGGAT
CCTTTCTATGCCAACTACCTCGTGCCTTACTGTCTTCACCTCGCCCACAC
CAAGGTAGGCAGCGTCATCTCGCTCCTTCTCCTTCCTCCCTCCATTCTTG
GACCGTTACATTCTGTACACACATCTGATATTTCTTTTCATCCCTTTTCT
TCACCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTTCTGATC
TCTTCTCGCCAATTTTGCGGGTTTGAGCTAGAGGCTGGATTTCTCCGCTT
GACCCACTCCCTCCTTCTCTCTCTCTTTCCTACCTTCTCCCCTCCCTCCT
TCTCTCCCTCCCTCCTTCCTTCCTTCCCTCCCTAGGGGTGGGCGGTACCG
GACGTACCCGCGTTTGAAGTAGACCGTGATTGCACGACTGCCAAGGCCTG
GAGGCAAGAGCACCACGAGCTGCTCGCCAAAAATAGATTGCTTTCAGGAG
GAGGAGGGGAGGGGGGGAGTGGGGGAGAGGAGAGAGGAGGTGGGGGACAG
GAAGGAAAGTAGGGCGCGGTAGTGGCGGAAGGGTAGCTGTGATGGGAGTA
GAAAGGAGGGGGAAAGGGAGGGAGGGGGGGGGAGATAGAAGTGTACAGCC
TGGATAAATGAAGATGGTCAGCGACGGCGAAGATATATGGAGGTTGAAGA
AGGAGGGGAAGTGGGAGGGAGACCAAAAAGAGGCAAGAGTAGAGTAGAGT
TGCGTAGATTTTGATTGGATTGGAGTGCCTGGACGTGTAAGGGGAGTTCG
AGAGGTAGGAAGGAGGAGAAAAGAAAACGAGGCCGCCATGAGATGTTGGG
CTGACAGATCCGAGATAGATCCTCTATATCTCATACGCT back to topCoding sequence (CDS) from alignment at chr9:1014512..1017950- >NO09G03550.1 ID=NO09G03550.1|Name=NO09G03550.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr9:1014512..1017950- (Nannochloropsis oceanica)
ATGGCCCCCCTAGAGGCAAGCAGCAGTCCATCCCAAGAGCATCAGCCAGC
GTTGGACAAGCACGAAGCATGGCCCGACCCAGAAGAGGAAGGCAAGGATG
GCAACTATCGCGGATACACCATGGATGTGACCGCAAGCGCAGTGGAGGAA
ATGCAAGTGGGGGAGGAGAATGTGCAATGGGCCTATCGATTGATCCAGCT
CTTGGATGCCGACACTCGTCTGTTTTTGGCGGATGGGCTGCTTCGCAAGG
TGGAGGCATTCGTAGCTACCGGTACCGGCCCCCTCTCGCAGTGGGCGCGA
CGAGTGATGGTGATACCGGAGAATGCAAAGCGCTTGGCTGAACTCCGGCG
ACGGGTGGAAGTGTGTCGACAGGCAGCGAGGGACATGCGCTCCGATGATT
GGCATCTCGCTCACACGGAAGACGGGATTGAGACGTTTTCTCGAAAGGAT
GAAGGGGACAATACATTGGCGTGGCGGACTCATGGAGAGATTGAGGATTG
CCCGGTGGTGTCCCAGCTGGCCGTTCTGCGAGAGCCGGATCACTACCACC
GATGGATTCCTCTTATGGACAAAAGCAAAGTCGTCAAGCGCCTCGGCAAG
ATCGAGCAGATGGTCTGGTTCCGGGTAGCAGGCACCGGCATCCCCTTTGT
GCGTGACGCCGTCCTCCACCTGTACGGGTGCGACGCCTCGGAGGAAAACC
TCATCATCCTGTCCGGTGCCTCCATGCCAGAGAGCGAGATAACGGACGAG
ATGGACGTGAGGCCGCCCAAGAAAAAGTGGAACCATGCGCGGGTCGATAT
CAAGTACTTCAGCATCCAGCTCAAGATCCTGTCCCCCACGCACTGTAAGA
TCGACCTCATCTACAACCTGGACGTGAAGCTAACACTTGTCCCGCAGGCC
ATCATCAACTACTTCTCCAAATTCACCTGCGGATGGGTGATATGGTTCCT
TTTCCAGGAGATGCGACGCATTCAGACAGATCCTGTACATAACCCCACGG
CGCAGCTCATGCGCTCGGATCCTTTCTATGCCAACTACCTCGTGCCTTAC
TGTCTTCACCTCGCCCACACCAAGAGGCTGGATTTCTCCGCTTGA back to top
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