NO09G02900.1, NO09G02900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02900.1
Unique NameNO09G02900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1128
Alignment locationchr9:849976..851103 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:849976..851103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02900.1 vs.
Match: EWM27517.1 (histone deacetylase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 484.2 bits (1245), Expect = 3.700e-133
Identity = 241/358 (67.32%), Postives = 285/358 (79.61%), Query Frame = 0 
Query:    7 RPRSLLSSLLVSLFIVTFPVCAFLPVYPIPAHNSRLIPIHATVAGTGVNVLYSERFLEHKARGYHPENPLRVSVPAQVLKHTPGIHLKAPTTTQEAALAAVLRVHDPAYVEEIRSLSTRGGGNIDADTFVNGATYEVCLLAATAWMDCARQTLFGDEEEEE-EAGSLAATPVRVPIRRPSFALTRPPGHHAGRSQAMGFCIFNFAVIAARYAFDKLGCQRVAILDLDAHHGNGNEEAVRTEPSMCYASFHQQDSFPMTGQDPSDHGPHGNLLNVPIRAYTEITSYLPLLDEKVLPFLTAFGPDLVIVSAGYDCLVDDPLAQLALGPRDFEAVGERLLRAFGRGKIMFGLEGGYEPENV 364
            R +++    L+ L +  F V AF+     PA   RL+P  A     GVNV+YSERFLEHKARGYHPENPLRVSVPAQ+LKHTPG+ L  P  ++E ALA +L+VHD  YVEE+++LS RGGG++DADT+VN ATY+VCLLAA AWMDC  +TL G+ EE   E G      V   IRRPSFALTRPPGHHA   QAMGFCIFNFA +AA YA D+LGC++VAILDLDAHHGNG++  VRT PS+CYASFHQ+D+FPMTG DP D+GPHGNLL+VPI AY+ + +YLPLLD+KVLPFLTAF PDL+IVS GYDCLVDDPLAQLALGP+DF AVG+RLLRAFGR KI+FGLEGGY+P+NV
Sbjct:    5 RTKTIFFVWLLHLSLAAFVVHAFVTNVAKPALR-RLLPRCAA----GVNVIYSERFLEHKARGYHPENPLRVSVPAQLLKHTPGVRLYPPAVSKEEALAVILKVHDVEYVEEVKALSERGGGSMDADTYVNSATYDVCLLAAAAWMDCVERTLLGEMEEVPGENGDNLTLRVHNGIRRPSFALTRPPGHHALAGQAMGFCIFNFAAVAACYALDRLGCRKVAILDLDAHHGNGHQAFVRTHPSICYASFHQKDAFPMTGLDPRDYGPHGNLLDVPIPAYSGLGTYLPLLDDKVLPFLTAFEPDLLIVSIGYDCLVDDPLAQLALGPQDFTAVGDRLLRAFGREKIVFGLEGGYDPDNV 357
The following BLAST results are available for this feature:
BLAST of NO09G02900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27517.13.700e-13367.32histone deacetylase superfamily [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02900NO09G02900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02900.1NO09G02900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02900.1.cds1NO09G02900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02900.1 ID=NO09G02900.1|Name=NO09G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
ATGCATATAATCAGGGCAAGACCAAGATCGCTATTATCTAGCTTGCTCGT
TTCCCTATTTATCGTCACGTTTCCAGTCTGCGCTTTTCTTCCCGTCTATC
CCATCCCTGCCCACAACTCTCGCCTCATTCCCATCCACGCCACCGTCGCC
GGCACGGGCGTCAATGTCCTCTACTCTGAGCGCTTTCTAGAACACAAAGC
ACGAGGCTACCATCCGGAAAATCCTTTACGGGTTTCGGTCCCAGCGCAAG
TCCTTAAGCACACTCCAGGGATTCATCTAAAGGCGCCCACCACGACTCAA
GAGGCGGCGTTGGCCGCAGTCCTGCGAGTCCACGACCCGGCTTACGTGGA
GGAAATCAGATCCTTATCCACGCGAGGTGGAGGAAATATCGATGCAGATA
CGTTTGTCAATGGTGCGACATATGAGGTGTGTTTGTTGGCAGCGACTGCT
TGGATGGATTGCGCCAGACAGACCTTGTTTGGGGACGAGGAAGAGGAGGA
GGAGGCAGGGTCGCTTGCGGCTACGCCCGTCCGGGTTCCCATCCGACGAC
CTTCTTTTGCCTTGACTCGGCCACCGGGTCATCATGCAGGACGCTCACAG
GCAATGGGCTTCTGCATCTTCAACTTTGCTGTGATTGCCGCCCGGTATGC
ATTCGACAAGTTGGGTTGCCAACGAGTGGCGATTTTGGATTTGGACGCTC
ACCACGGGAATGGGAATGAGGAGGCGGTCCGTACAGAACCTTCCATGTGC
TATGCATCATTCCACCAGCAAGATTCATTTCCGATGACGGGCCAAGATCC
GAGCGATCACGGGCCTCACGGGAATCTGCTCAATGTCCCTATCCGTGCCT
ACACCGAAATTACATCTTACCTGCCCCTGCTGGACGAGAAGGTCCTTCCC
TTCTTAACGGCGTTCGGGCCTGACCTTGTTATTGTCTCGGCGGGCTATGA
TTGTTTGGTGGACGATCCACTGGCACAGTTGGCCTTGGGTCCCCGGGATT
TTGAGGCGGTGGGGGAGAGGCTGTTGAGAGCGTTCGGAAGAGGGAAGATT
ATGTTTGGATTGGAAGGAGGATACGAGCCGGAGAATGTGGCGGCAGCGAT
TGTGGCGACGTTGAAACCATTTCTATAG
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protein sequence of NO09G02900.1

>NO09G02900.1-protein ID=NO09G02900.1-protein|Name=NO09G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MHIIRARPRSLLSSLLVSLFIVTFPVCAFLPVYPIPAHNSRLIPIHATVA
GTGVNVLYSERFLEHKARGYHPENPLRVSVPAQVLKHTPGIHLKAPTTTQ
EAALAAVLRVHDPAYVEEIRSLSTRGGGNIDADTFVNGATYEVCLLAATA
WMDCARQTLFGDEEEEEEAGSLAATPVRVPIRRPSFALTRPPGHHAGRSQ
AMGFCIFNFAVIAARYAFDKLGCQRVAILDLDAHHGNGNEEAVRTEPSMC
YASFHQQDSFPMTGQDPSDHGPHGNLLNVPIRAYTEITSYLPLLDEKVLP
FLTAFGPDLVIVSAGYDCLVDDPLAQLALGPRDFEAVGERLLRAFGRGKI
MFGLEGGYEPENVAAAIVATLKPFL*
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mRNA from alignment at chr9:849976..851103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02900.1 ID=NO09G02900.1|Name=NO09G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp|location=Sequence derived from alignment at chr9:849976..851103- (Nannochloropsis oceanica)
ATGCATATAATCAGGGCAAGACCAAGATCGCTATTATCTAGCTTGCTCGT
TTCCCTATTTATCGTCACGTTTCCAGTCTGCGCTTTTCTTCCCGTCTATC
CCATCCCTGCCCACAACTCTCGCCTCATTCCCATCCACGCCACCGTCGCC
GGCACGGGCGTCAATGTCCTCTACTCTGAGCGCTTTCTAGAACACAAAGC
ACGAGGCTACCATCCGGAAAATCCTTTACGGGTTTCGGTCCCAGCGCAAG
TCCTTAAGCACACTCCAGGGATTCATCTAAAGGCGCCCACCACGACTCAA
GAGGCGGCGTTGGCCGCAGTCCTGCGAGTCCACGACCCGGCTTACGTGGA
GGAAATCAGATCCTTATCCACGCGAGGTGGAGGAAATATCGATGCAGATA
CGTTTGTCAATGGTGCGACATATGAGGTGTGTTTGTTGGCAGCGACTGCT
TGGATGGATTGCGCCAGACAGACCTTGTTTGGGGACGAGGAAGAGGAGGA
GGAGGCAGGGTCGCTTGCGGCTACGCCCGTCCGGGTTCCCATCCGACGAC
CTTCTTTTGCCTTGACTCGGCCACCGGGTCATCATGCAGGACGCTCACAG
GCAATGGGCTTCTGCATCTTCAACTTTGCTGTGATTGCCGCCCGGTATGC
ATTCGACAAGTTGGGTTGCCAACGAGTGGCGATTTTGGATTTGGACGCTC
ACCACGGGAATGGGAATGAGGAGGCGGTCCGTACAGAACCTTCCATGTGC
TATGCATCATTCCACCAGCAAGATTCATTTCCGATGACGGGCCAAGATCC
GAGCGATCACGGGCCTCACGGGAATCTGCTCAATGTCCCTATCCGTGCCT
ACACCGAAATTACATCTTACCTGCCCCTGCTGGACGAGAAGGTCCTTCCC
TTCTTAACGGCGTTCGGGCCTGACCTTGTTATTGTCTCGGCGGGCTATGA
TTGTTTGGTGGACGATCCACTGGCACAGTTGGCCTTGGGTCCCCGGGATT
TTGAGGCGGTGGGGGAGAGGCTGTTGAGAGCGTTCGGAAGAGGGAAGATT
ATGTTTGGATTGGAAGGAGGATACGAGCCGGAGAATGTGGCGGCAGCGAT
TGTGGCGACGTTGAAACCATTTCTATAG
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Coding sequence (CDS) from alignment at chr9:849976..851103-

>NO09G02900.1 ID=NO09G02900.1|Name=NO09G02900.1|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at chr9:849976..851103- (Nannochloropsis oceanica)
ATGCATATAATCAGGGCAAGACCAAGATCGCTATTATCTAGCTTGCTCGT
TTCCCTATTTATCGTCACGTTTCCAGTCTGCGCTTTTCTTCCCGTCTATC
CCATCCCTGCCCACAACTCTCGCCTCATTCCCATCCACGCCACCGTCGCC
GGCACGGGCGTCAATGTCCTCTACTCTGAGCGCTTTCTAGAACACAAAGC
ACGAGGCTACCATCCGGAAAATCCTTTACGGGTTTCGGTCCCAGCGCAAG
TCCTTAAGCACACTCCAGGGATTCATCTAAAGGCGCCCACCACGACTCAA
GAGGCGGCGTTGGCCGCAGTCCTGCGAGTCCACGACCCGGCTTACGTGGA
GGAAATCAGATCCTTATCCACGCGAGGTGGAGGAAATATCGATGCAGATA
CGTTTGTCAATGGTGCGACATATGAGGTGTGTTTGTTGGCAGCGACTGCT
TGGATGGATTGCGCCAGACAGACCTTGTTTGGGGACGAGGAAGAGGAGGA
GGAGGCAGGGTCGCTTGCGGCTACGCCCGTCCGGGTTCCCATCCGACGAC
CTTCTTTTGCCTTGACTCGGCCACCGGGTCATCATGCAGGACGCTCACAG
GCAATGGGCTTCTGCATCTTCAACTTTGCTGTGATTGCCGCCCGGTATGC
ATTCGACAAGTTGGGTTGCCAACGAGTGGCGATTTTGGATTTGGACGCTC
ACCACGGGAATGGGAATGAGGAGGCGGTCCGTACAGAACCTTCCATGTGC
TATGCATCATTCCACCAGCAAGATTCATTTCCGATGACGGGCCAAGATCC
GAGCGATCACGGGCCTCACGGGAATCTGCTCAATGTCCCTATCCGTGCCT
ACACCGAAATTACATCTTACCTGCCCCTGCTGGACGAGAAGGTCCTTCCC
TTCTTAACGGCGTTCGGGCCTGACCTTGTTATTGTCTCGGCGGGCTATGA
TTGTTTGGTGGACGATCCACTGGCACAGTTGGCCTTGGGTCCCCGGGATT
TTGAGGCGGTGGGGGAGAGGCTGTTGAGAGCGTTCGGAAGAGGGAAGATT
ATGTTTGGATTGGAAGGAGGATACGAGCCGGAGAATGTGGCGGCAGCGAT
TGTGGCGACGTTGAAACCATTTCTATAG
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Synonyms
Publications