NO09G02720.1, NO09G02720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02720.1
Unique NameNO09G02720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr9:804677..805630 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:804677..805630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02720.1 vs.
Match: EWM27520.1 (presenilin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 328.6 bits (841), Expect = 2.200e-86
Identity = 210/327 (64.22%), Postives = 228/327 (69.72%), Query Frame = 0 
Query:    1 MAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLKYLVGLMQERDAPTMPGLLYEAELPAHARHHHRVPPPLVGR-----TGGIAVAA--DTRVEGMQRTDLQTPVRDVSREDGG-PAALIPSGPASSLHCNNPPSPLDPLLDSSHSSPGGDHLDRRHRHHQQQQQPHKQQQQQLRGGRINSSLLEVG-GTPQEEGDAEGS-GERGNGGVGGNSGTADYPLSSSSSQEHHGGRGAPEERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIISGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVVIIPYIDALVSLPLYV 318
            MAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPL+YLVGLMQE + P MPGLLYEAELP HARHHHR+PP    R     TG +A A   D   EG     LQ PV D    DG    A+     A ++H  +PPSPLDPLLD + SSPGG HL + H  H  +      + Q   GG    +LLE G G+P E G+  G   ERG  G    SG    P    SS  HH G    +ERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVII+GLGATLVLLSVFRKALPALPISIGLGVLFYLLTRV IIPYIDALVS P+YV
Sbjct:  214 MAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEP-MPGLLYEAELPGHARHHHRIPPSTALRGSERATGALASAGSLDGGCEG-DDVRLQAPVGD----DGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQSSPGGTHLGQHHPPHPSRSLRRVSRSQ---GGE---TLLEDGMGSPVEGGNEHGGESERGERG---ESGRGHGPSEGLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYIDALVSTPIYV 525
The following BLAST results are available for this feature:
BLAST of NO09G02720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27520.12.200e-8664.22presenilin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02720NO09G02720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02720.1NO09G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02720.1.cds1NO09G02720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02720.1 ID=NO09G02720.1|Name=NO09G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATGGCCTGGCAGTTGTCGAGGTTCGAGGAATGGACAGGCTGGGCCTTGTT
GGTGGTCTTGGCCCTGTATGATTTATGTGCCGTGCTTACACCCTGTGGAC
CATTGAAGTATTTGGTAGGGTTGATGCAAGAGCGCGACGCTCCTACCATG
CCTGGTCTGCTCTACGAGGCGGAGTTGCCTGCTCATGCACGGCACCATCA
CAGGGTGCCGCCTCCACTCGTTGGGAGGACAGGAGGAATAGCAGTAGCAG
CAGACACAAGGGTGGAAGGAATGCAAAGAACGGATCTACAGACGCCTGTG
CGCGATGTGAGTAGGGAAGATGGGGGGCCTGCGGCGTTGATACCTTCGGG
CCCGGCGAGCAGCTTGCATTGCAACAATCCGCCTTCTCCTCTCGATCCGC
TGTTGGACAGTTCGCACAGCAGCCCGGGTGGAGATCATCTCGACCGTCGC
CACCGTCACCATCAGCAGCAGCAACAGCCACACAAACAACAACAACAGCA
GTTGCGGGGAGGTCGGATCAATTCTAGCTTGCTCGAAGTAGGGGGTACTC
CACAGGAGGAGGGGGATGCGGAGGGTAGTGGCGAACGAGGAAATGGAGGG
GTGGGCGGAAACAGTGGCACGGCTGACTATCCTTTATCGTCGTCCTCCTC
GCAGGAGCACCACGGAGGAAGAGGAGCGCCGGAGGAGCGAAGCATTAAGC
TGGGCTTGGGGGATTTTGTTTTTTACAGTGTTCTGGTGGGCAAGGCGGCT
TTGTATGGGTTTGCGACTTGCGCGGCCTGTTTCCTCGTCATTATTTCGGG
CTTGGGCGCAACACTTGTGTTGCTGAGTGTCTTTCGAAAGGCGCTGCCGG
CATTGCCGATTTCGATTGGCCTCGGCGTGCTGTTTTATTTGCTTACGCGC
GTTGTTATCATTCCGTACATCGATGCCTTGGTCAGTTTACCTCTTTACGT
CTAG
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protein sequence of NO09G02720.1

>NO09G02720.1-protein ID=NO09G02720.1-protein|Name=NO09G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLKYLVGLMQERDAPTM
PGLLYEAELPAHARHHHRVPPPLVGRTGGIAVAADTRVEGMQRTDLQTPV
RDVSREDGGPAALIPSGPASSLHCNNPPSPLDPLLDSSHSSPGGDHLDRR
HRHHQQQQQPHKQQQQQLRGGRINSSLLEVGGTPQEEGDAEGSGERGNGG
VGGNSGTADYPLSSSSSQEHHGGRGAPEERSIKLGLGDFVFYSVLVGKAA
LYGFATCAACFLVIISGLGATLVLLSVFRKALPALPISIGLGVLFYLLTR
VVIIPYIDALVSLPLYV*
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mRNA from alignment at chr9:804677..805630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02720.1 ID=NO09G02720.1|Name=NO09G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at chr9:804677..805630- (Nannochloropsis oceanica)
ATGGCCTGGCAGTTGTCGAGGTTCGAGGAATGGACAGGCTGGGCCTTGTT
GGTGGTCTTGGCCCTGTATGATTTATGTGCCGTGCTTACACCCTGTGGAC
CATTGAAGTATTTGGTAGGGTTGATGCAAGAGCGCGACGCTCCTACCATG
CCTGGTCTGCTCTACGAGGCGGAGTTGCCTGCTCATGCACGGCACCATCA
CAGGGTGCCGCCTCCACTCGTTGGGAGGACAGGAGGAATAGCAGTAGCAG
CAGACACAAGGGTGGAAGGAATGCAAAGAACGGATCTACAGACGCCTGTG
CGCGATGTGAGTAGGGAAGATGGGGGGCCTGCGGCGTTGATACCTTCGGG
CCCGGCGAGCAGCTTGCATTGCAACAATCCGCCTTCTCCTCTCGATCCGC
TGTTGGACAGTTCGCACAGCAGCCCGGGTGGAGATCATCTCGACCGTCGC
CACCGTCACCATCAGCAGCAGCAACAGCCACACAAACAACAACAACAGCA
GTTGCGGGGAGGTCGGATCAATTCTAGCTTGCTCGAAGTAGGGGGTACTC
CACAGGAGGAGGGGGATGCGGAGGGTAGTGGCGAACGAGGAAATGGAGGG
GTGGGCGGAAACAGTGGCACGGCTGACTATCCTTTATCGTCGTCCTCCTC
GCAGGAGCACCACGGAGGAAGAGGAGCGCCGGAGGAGCGAAGCATTAAGC
TGGGCTTGGGGGATTTTGTTTTTTACAGTGTTCTGGTGGGCAAGGCGGCT
TTGTATGGGTTTGCGACTTGCGCGGCCTGTTTCCTCGTCATTATTTCGGG
CTTGGGCGCAACACTTGTGTTGCTGAGTGTCTTTCGAAAGGCGCTGCCGG
CATTGCCGATTTCGATTGGCCTCGGCGTGCTGTTTTATTTGCTTACGCGC
GTTGTTATCATTCCGTACATCGATGCCTTGGTCAGTTTACCTCTTTACGT
CTAG
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Coding sequence (CDS) from alignment at chr9:804677..805630-

>NO09G02720.1 ID=NO09G02720.1|Name=NO09G02720.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr9:804677..805630- (Nannochloropsis oceanica)
ATGGCCTGGCAGTTGTCGAGGTTCGAGGAATGGACAGGCTGGGCCTTGTT
GGTGGTCTTGGCCCTGTATGATTTATGTGCCGTGCTTACACCCTGTGGAC
CATTGAAGTATTTGGTAGGGTTGATGCAAGAGCGCGACGCTCCTACCATG
CCTGGTCTGCTCTACGAGGCGGAGTTGCCTGCTCATGCACGGCACCATCA
CAGGGTGCCGCCTCCACTCGTTGGGAGGACAGGAGGAATAGCAGTAGCAG
CAGACACAAGGGTGGAAGGAATGCAAAGAACGGATCTACAGACGCCTGTG
CGCGATGTGAGTAGGGAAGATGGGGGGCCTGCGGCGTTGATACCTTCGGG
CCCGGCGAGCAGCTTGCATTGCAACAATCCGCCTTCTCCTCTCGATCCGC
TGTTGGACAGTTCGCACAGCAGCCCGGGTGGAGATCATCTCGACCGTCGC
CACCGTCACCATCAGCAGCAGCAACAGCCACACAAACAACAACAACAGCA
GTTGCGGGGAGGTCGGATCAATTCTAGCTTGCTCGAAGTAGGGGGTACTC
CACAGGAGGAGGGGGATGCGGAGGGTAGTGGCGAACGAGGAAATGGAGGG
GTGGGCGGAAACAGTGGCACGGCTGACTATCCTTTATCGTCGTCCTCCTC
GCAGGAGCACCACGGAGGAAGAGGAGCGCCGGAGGAGCGAAGCATTAAGC
TGGGCTTGGGGGATTTTGTTTTTTACAGTGTTCTGGTGGGCAAGGCGGCT
TTGTATGGGTTTGCGACTTGCGCGGCCTGTTTCCTCGTCATTATTTCGGG
CTTGGGCGCAACACTTGTGTTGCTGAGTGTCTTTCGAAAGGCGCTGCCGG
CATTGCCGATTTCGATTGGCCTCGGCGTGCTGTTTTATTTGCTTACGCGC
GTTGTTATCATTCCGTACATCGATGCCTTGGTCAGTTTACCTCTTTACGT
CTAG
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Synonyms
Publications