NO09G02310.1, NO09G02310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02310.1
Unique NameNO09G02310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2718
Alignment locationchr9:693285..696259 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:693285..696259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02310.1 vs.
Match: EWM27531.1 (general transcription factor polypeptide 5 [Nannochloropsis gaditana])

HSP 1 Score: 341.7 bits (875), Expect = 5.900e-90
Identity = 189/280 (67.50%), Postives = 215/280 (76.79%), Query Frame = 0
Query:   44 AMDIIANGEQKNGAPPASLSLPGCGAGAAADGGAASTAGEEQASSLPMASPHSSSSADDPSTVRLLTRQTGKPLKLKRLLAVDLPVLCSSPMTAVSMLGGMDRLSAACTGNARKLHFYFRPEDKLSIPVPSQGKIPSSRLLLRVRLRKDGTTGDRTVVAKEVVGTISTTFQFTALADFQYLTTQAFLPVGTADVVSKTRLEIVPSSFVPVAHAGNYAYTSLKSSALANQDTARRQGVVIKFGCPIPKAPPAMLVNRPRRRLEKYGQVLEKLQALFDRTRG 324
            A D++A  EQ+  +    L+    G   A++   A T  E +   LP+      +S  D +TVRL T + G+PLKLKRLLAVDLPVLCS PMTAVSMLGG+DRLSAACTG  RKL F FRP D+LSIP+ SQ KIP+SRLLLRVR+R+   TG R  V  EVVGT+STTFQF  LADFQYLTTQAFLP GT D+VS+ RLEIVP SF+PVAHAGNYAY SLKSSALA+ DTARRQGVVI++GCPIPKAPPAMLVNRPRRR EKYGQVLEKLQALFDR  G
Sbjct:   12 ASDVLAPSEQREDSVNVKLTAGEQGICVASNICPAETCMEAEGGILPL------TSKKDHATVRLETSKPGEPLKLKRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITGQRYAVHTEVVGTVSTTFQFRCLADFQYLTTQAFLPPGTPDLVSQARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSG 285          
The following BLAST results are available for this feature:
BLAST of NO09G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27531.15.900e-9067.50general transcription factor polypeptide 5 [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02310NO09G02310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02310.1NO09G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02310.1.cds1NO09G02310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02310.1.cds2NO09G02310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02310.1 ID=NO09G02310.1|Name=NO09G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2718bp
CTTCTGTCTTTTTGTTGCTTTAGTTCTTTCCCAAACCTCGGAGAAACGAT
GGGGGCTGACCCACGAGCCCGCCTAAGTAAGAGATCTCATGCATTCGAGT
AGTAAAAGTGAATTGGGGATCACCATGAGGTATTTTCCATTATTTACTCA
GACAACCGTGAATTTAATTCTTATACGGAAAACTGCTTCAGGGCACCTTT
CCGCTTTTGCCGCTGGGATTAATTCATGTAATTAACGCCGCCAAGCATTT
GTTTGGCACTGAACCTTCGTCCACACTTACACCGCCGCCTGAATGTGCAT
CATAGTCTCACACTCACTCTGCCCTATTGACTTTTTTGCCACCTCCAATA
CACAGGTGACGACGACGCAAGAGGTTAAAACGTATCTGCCCGAGGAACCA
TCCGCCTCAGCATCTGCAGCTGCCATGGATATTATTGCCAACGGCGAGCA
GAAGAATGGAGCACCACCAGCATCACTATCACTACCAGGCTGTGGTGCTG
GCGCGGCGGCGGACGGCGGAGCTGCAAGTACTGCAGGAGAAGAGCAAGCA
TCATCTCTCCCCATGGCGTCACCACATTCCTCCTCATCGGCAGACGACCC
CTCCACCGTTCGCCTCCTCACACGCCAGACCGGGAAACCCTTGAAACTCA
AGCGACTGCTCGCTGTGGACTTGCCCGTGCTATGCTCGAGTCCCATGACG
GCTGTCAGCATGCTAGGAGGCATGGACCGCTTGAGCGCGGCCTGCACTGG
CAACGCCCGCAAGCTCCACTTCTACTTCCGACCTGAGGACAAACTCAGCA
TCCCCGTACCCTCTCAAGGCAAGATTCCGTCCTCCCGTCTTCTGCTCCGT
GTCCGTCTCCGCAAGGACGGGACGACAGGGGATCGCACTGTGGTGGCCAA
GGAGGTGGTGGGTACGATTAGTACCACCTTTCAATTTACGGCCTTGGCTG
ATTTCCAATACCTGACTACGCAAGCTTTTCTTCCTGTGGGCACGGCGGAT
GTGGTCTCAAAGACACGTTTGGAGATCGTGCCATCTTCGTTTGTGCCAGT
GGCCCATGCGGGAAATTACGCGTATACTTCACTAAAGTCCTCGGCGTTGG
CAAATCAGGACACGGCGCGACGGCAGGGGGTTGTTATTAAGTTCGGGTGT
CCCATCCCTAAGGCTCCTCCGGCAATGTTGGTAAACCGACCGAGGAGGAG
GTTGGAGAAGTATGGGCAGGTGTTGGAGAAGCTGCAGGCGTTGTTTGATC
GGACACGTGGCGGCCGTGAGATGTGGCAACGCAAGGCTCTCGAGTCCAAA
TTCGAGGGGGACGACCTGCACGCTTTTTTGGAGCTGTTGCGCGTGGTGGC
GTACAACATGAGTAACGGGCCGTGGCGGGGGTTCTGGGTCAAGTATGGCT
ATGATCCGAGTCAGGATTCAGTCGCGCGGCTGTACCAGGCACTGGATGTC
AGGTGGAAGGAGGCAGGGCTCGAGAAGCTGAAGACGAGCTACGGGGAGGT
CTGGAAGAAGGTGAGGGCGGAGGCGGGCAGGGAGGACGAGGAGGAGGAGG
GGGTGGAAGAGTTGAAGTTGTTTGGGTTGCCCGTACGGAGGCAGATGGTG
TTCCAGTTATGTGATTTGGGGAGTGCATCGTTGCAGCGGTTGGTGCTGGC
GGTGCCGAGAAAGGCGGAATGTACGGCGCAGGGGGGTTGGTTCCGGCTGA
GTGACTTGACGGTGTTACGTGGGAAAATTAAGAGATATTTGAGTGGGAAG
GTGGCCGAGTGCGTGAGGACGGGGAGTGTGGAGCCGGTGACGGGCGGTAG
GGGTGGGAAGGGAGGGAGGGAGGAAGGGGCGCTTTCGCCCGGAGAAATGA
TTCTTGAGGCTGAGGCACGAAGGGGAGAGGAGGTTGTGCTGCCGGAAAGA
GGAAGTGGGGGAAGTAAGGGAGGAGGACGAGGGGAAGGAGAGGGGGCGGG
GATAAACGGTGCTGCTGGTGTTGATGGGGAAAGAGAGAGGGAAGAATGCG
ATGGCGTAATGGCTGCTGCAACGAGGAAAAGCAAACGCAAGGCAACGGGA
GGAGGACGAGGGGGTGGGATAGGTGGGAGGGGTCGTGGCGGTCGCAGCAA
AAAGAAAGCACGGCGGGTGGGCGGTGAAGCGGAAGAGACGCATGAAAGTG
AGAGCGACGAGGAGGAGGAGGAGAAGAAGGAAGGGAGGTATCAAAATAGA
GGAGAAAGGGACGAGGAGGAGTCTTACGGCCAGGGGCGTGGGGACGAGGA
AGGGATGGAGGATGAGGAGGAAGCGGGAGCGCGTCAGTTGGAGAGATTGT
TTGGGCAGCCGGGCCGGCGTACCGTGGACAGGGCGAGGGCCAATACAGCG
GCAGTGACGAGAGGGCGAACTCGCCATCAGGGGGGGGATGAGGACAAGGA
GGACGATTTGGGCAGAACTTTTGTCATTCCCTTGACGGCAGGGGATGTGC
AGAACGCCAGCTCGATCCGGTTGTTGGGTGGGTATCAGGGAGCGGATTAC
TCCTCCTCGTCGTCGGATGATGATGATGGGAGTGATTAAGAGGTAAAAGA
TAAAAGGAAAAAGATATGCATGTTTAGACGCTCGAAACGAAAAGAGATAT
TGTACGGCGACGAGGGGACGAAAGGCGAATATAGGACGTTGTACAGAACG
CGATTGTAATGTTAGTAAACGTAAAGCAAATGCACCCAGAAAGCATTAAG
TTTTCATTTTCTCTGGTT
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protein sequence of NO09G02310.1

>NO09G02310.1-protein ID=NO09G02310.1-protein|Name=NO09G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp
MCIIVSHSLCPIDFFATSNTQVTTTQEVKTYLPEEPSASASAAAMDIIAN
GEQKNGAPPASLSLPGCGAGAAADGGAASTAGEEQASSLPMASPHSSSSA
DDPSTVRLLTRQTGKPLKLKRLLAVDLPVLCSSPMTAVSMLGGMDRLSAA
CTGNARKLHFYFRPEDKLSIPVPSQGKIPSSRLLLRVRLRKDGTTGDRTV
VAKEVVGTISTTFQFTALADFQYLTTQAFLPVGTADVVSKTRLEIVPSSF
VPVAHAGNYAYTSLKSSALANQDTARRQGVVIKFGCPIPKAPPAMLVNRP
RRRLEKYGQVLEKLQALFDRTRGGREMWQRKALESKFEGDDLHAFLELLR
VVAYNMSNGPWRGFWVKYGYDPSQDSVARLYQALDVRWKEAGLEKLKTSY
GEVWKKVRAEAGREDEEEEGVEELKLFGLPVRRQMVFQLCDLGSASLQRL
VLAVPRKAECTAQGGWFRLSDLTVLRGKIKRYLSGKVAECVRTGSVEPVT
GGRGGKGGREEGALSPGEMILEAEARRGEEVVLPERGSGGSKGGGRGEGE
GAGINGAAGVDGEREREECDGVMAAATRKSKRKATGGGRGGGIGGRGRGG
RSKKKARRVGGEAEETHESESDEEEEEKKEGRYQNRGERDEEESYGQGRG
DEEGMEDEEEAGARQLERLFGQPGRRTVDRARANTAAVTRGRTRHQGGDE
DKEDDLGRTFVIPLTAGDVQNASSIRLLGGYQGADYSSSSSDDDDGSD*
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mRNA from alignment at chr9:693285..696259+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02310.1 ID=NO09G02310.1|Name=NO09G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2975bp|location=Sequence derived from alignment at chr9:693285..696259+ (Nannochloropsis oceanica)
CTTCTGTCTTTTTGTTGCTTTAGTTCTTTCCCAAACCTCGGAGAAACGAT GGGGGCTGACCCACGAGCCCGCCTAAGTAAGAGATCTCATGCATTCGAGT AGTAAAAGTGAATTGGGGATCACCATGAGGTATTTTCCATTATTTACTCA GACAACCGTGAATTTAATTCTTATACGGAAAACTGCTTCAGGGCACCTTT CCGCTTTTGCCGCTGGGATTAATTCATGTAATTAACGCCGCCAAGCATTT GTTTGGCACTGAACCTTCGTCCACACTTACACCGCCGCCTGAATGTGCAT CATAGTCTCACACTCACTCTGCCCTATTGACTTTTTTGCCACCTCCAATA CACAGGTGACGACGACGCAAGAGGTTAAAACGTATCTGCCCGAGGAACCA TCCGCCTCAGCATCTGCAGCTGCCATGGATATTATTGCCAACGGCGAGCA GAAGAATGGAGCACCACCAGCATCACTATCACTACCAGGCTGTGGTGCTG GCGCGGCGGCGGACGGCGGAGCTGCAAGTACTGCAGGAGAAGAGCAAGCA TCATCTCTCCCCATGGCGTCACCACATTCCTCCTCATCGGCAGACGACCC CTCCACCGTTCGCCTCCTCACACGCCAGACCGGGAAACCCTTGAAACTCA AGCGACTGCTCGCTGTGGACTTGCCCGTGCTATGCTCGAGTCCCATGACG GCTGTCAGCATGCTAGGAGGCATGGACCGCTTGAGCGCGGCCTGCACTGG CAACGCCCGCAAGCTCCACTTCTACTTCCGACCTGAGGACAAACTCAGCA TCCCCGTACCCTCTCAAGGCAAGATTCCGTCCTCCCGTCTTCTGCTCCGT GTCCGTCTCCGCAAGGACGGGACGACAGGGGATCGCACTGTGGTGGCCAA GGAGGTGGTGGGTACGATTAGTACCACCTTTCAATTTACGGCCTTGGCTG ATTTCCAATACCTGACTACGCAAGCTTTTCTTCCTGTGGGCACGGCGGAT GTGGTCTCAAAGACACGTTTGGAGATCGTGCCATCTTCGTTTGTGCCAGT GGCCCATGCGGGAAATTACGCGTATACTTCACTAAAGTCCTCGGCGTTGG CAAATCAGGACACGGCGCGACGGCAGGGGGTTGTTATTAAGTTCGGGTGT CCCATCCCTAAGGCTCCTCCGGCAATGTTGGTAAACCGACCGAGGAGGAG GTTGGAGAAGTATGGGCAGGTGTTGGAGAAGCTGCAGGCGTTGTTTGATC GGGTGAGTTTTTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGAACTG AGGGCAAGAAGGAAGGAAACGAGTTGCGAAGTAGGCTTGCATTTTTTGGA TTCATTCTTTCTGTGTAGAGTGGCGATGGGTGAAGGGTATATGCAGTGAA GGGATCGTCACACACCTAGCCTACAGAAACGACGCCTAGCCACGCTTAAA TTCATCCCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAAA TTCAAGCAGACACGTGGCGGCCGTGAGATGTGGCAACGCAAGGCTCTCGA GTCCAAATTCGAGGGGGACGACCTGCACGCTTTTTTGGAGCTGTTGCGCG TGGTGGCGTACAACATGAGTAACGGGCCGTGGCGGGGGTTCTGGGTCAAG TATGGCTATGATCCGAGTCAGGATTCAGTCGCGCGGCTGTACCAGGCACT GGATGTCAGGTGGAAGGAGGCAGGGCTCGAGAAGCTGAAGACGAGCTACG GGGAGGTCTGGAAGAAGGTGAGGGCGGAGGCGGGCAGGGAGGACGAGGAG GAGGAGGGGGTGGAAGAGTTGAAGTTGTTTGGGTTGCCCGTACGGAGGCA GATGGTGTTCCAGTTATGTGATTTGGGGAGTGCATCGTTGCAGCGGTTGG TGCTGGCGGTGCCGAGAAAGGCGGAATGTACGGCGCAGGGGGGTTGGTTC CGGCTGAGTGACTTGACGGTGTTACGTGGGAAAATTAAGAGATATTTGAG TGGGAAGGTGGCCGAGTGCGTGAGGACGGGGAGTGTGGAGCCGGTGACGG GCGGTAGGGGTGGGAAGGGAGGGAGGGAGGAAGGGGCGCTTTCGCCCGGA GAAATGATTCTTGAGGCTGAGGCACGAAGGGGAGAGGAGGTTGTGCTGCC GGAAAGAGGAAGTGGGGGAAGTAAGGGAGGAGGACGAGGGGAAGGAGAGG GGGCGGGGATAAACGGTGCTGCTGGTGTTGATGGGGAAAGAGAGAGGGAA GAATGCGATGGCGTAATGGCTGCTGCAACGAGGAAAAGCAAACGCAAGGC AACGGGAGGAGGACGAGGGGGTGGGATAGGTGGGAGGGGTCGTGGCGGTC GCAGCAAAAAGAAAGCACGGCGGGTGGGCGGTGAAGCGGAAGAGACGCAT GAAAGTGAGAGCGACGAGGAGGAGGAGGAGAAGAAGGAAGGGAGGTATCA AAATAGAGGAGAAAGGGACGAGGAGGAGTCTTACGGCCAGGGGCGTGGGG ACGAGGAAGGGATGGAGGATGAGGAGGAAGCGGGAGCGCGTCAGTTGGAG AGATTGTTTGGGCAGCCGGGCCGGCGTACCGTGGACAGGGCGAGGGCCAA TACAGCGGCAGTGACGAGAGGGCGAACTCGCCATCAGGGGGGGGATGAGG ACAAGGAGGACGATTTGGGCAGAACTTTTGTCATTCCCTTGACGGCAGGG GATGTGCAGAACGCCAGCTCGATCCGGTTGTTGGGTGGGTATCAGGGAGC GGATTACTCCTCCTCGTCGTCGGATGATGATGATGGGAGTGATTAAGAGG TAAAAGATAAAAGGAAAAAGATATGCATGTTTAGACGCTCGAAACGAAAA GAGATATTGTACGGCGACGAGGGGACGAAAGGCGAATATAGGACGTTGTA CAGAACGCGATTGTAATGTTAGTAAACGTAAAGCAAATGCACCCAGAAAG CATTAAGTTTTCATTTTCTCTGGTT
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Coding sequence (CDS) from alignment at chr9:693285..696259+

>NO09G02310.1 ID=NO09G02310.1|Name=NO09G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=2247bp|location=Sequence derived from alignment at chr9:693285..696259+ (Nannochloropsis oceanica)
ATGTGCATCATAGTCTCACACTCACTCTGCCCTATTGACTTTTTTGCCAC
CTCCAATACACAGGTGACGACGACGCAAGAGGTTAAAACGTATCTGCCCG
AGGAACCATCCGCCTCAGCATCTGCAGCTGCCATGGATATTATTGCCAAC
GGCGAGCAGAAGAATGGAGCACCACCAGCATCACTATCACTACCAGGCTG
TGGTGCTGGCGCGGCGGCGGACGGCGGAGCTGCAAGTACTGCAGGAGAAG
AGCAAGCATCATCTCTCCCCATGGCGTCACCACATTCCTCCTCATCGGCA
GACGACCCCTCCACCGTTCGCCTCCTCACACGCCAGACCGGGAAACCCTT
GAAACTCAAGCGACTGCTCGCTGTGGACTTGCCCGTGCTATGCTCGAGTC
CCATGACGGCTGTCAGCATGCTAGGAGGCATGGACCGCTTGAGCGCGGCC
TGCACTGGCAACGCCCGCAAGCTCCACTTCTACTTCCGACCTGAGGACAA
ACTCAGCATCCCCGTACCCTCTCAAGGCAAGATTCCGTCCTCCCGTCTTC
TGCTCCGTGTCCGTCTCCGCAAGGACGGGACGACAGGGGATCGCACTGTG
GTGGCCAAGGAGGTGGTGGGTACGATTAGTACCACCTTTCAATTTACGGC
CTTGGCTGATTTCCAATACCTGACTACGCAAGCTTTTCTTCCTGTGGGCA
CGGCGGATGTGGTCTCAAAGACACGTTTGGAGATCGTGCCATCTTCGTTT
GTGCCAGTGGCCCATGCGGGAAATTACGCGTATACTTCACTAAAGTCCTC
GGCGTTGGCAAATCAGGACACGGCGCGACGGCAGGGGGTTGTTATTAAGT
TCGGGTGTCCCATCCCTAAGGCTCCTCCGGCAATGTTGGTAAACCGACCG
AGGAGGAGGTTGGAGAAGTATGGGCAGGTGTTGGAGAAGCTGCAGGCGTT
GTTTGATCGGACACGTGGCGGCCGTGAGATGTGGCAACGCAAGGCTCTCG
AGTCCAAATTCGAGGGGGACGACCTGCACGCTTTTTTGGAGCTGTTGCGC
GTGGTGGCGTACAACATGAGTAACGGGCCGTGGCGGGGGTTCTGGGTCAA
GTATGGCTATGATCCGAGTCAGGATTCAGTCGCGCGGCTGTACCAGGCAC
TGGATGTCAGGTGGAAGGAGGCAGGGCTCGAGAAGCTGAAGACGAGCTAC
GGGGAGGTCTGGAAGAAGGTGAGGGCGGAGGCGGGCAGGGAGGACGAGGA
GGAGGAGGGGGTGGAAGAGTTGAAGTTGTTTGGGTTGCCCGTACGGAGGC
AGATGGTGTTCCAGTTATGTGATTTGGGGAGTGCATCGTTGCAGCGGTTG
GTGCTGGCGGTGCCGAGAAAGGCGGAATGTACGGCGCAGGGGGGTTGGTT
CCGGCTGAGTGACTTGACGGTGTTACGTGGGAAAATTAAGAGATATTTGA
GTGGGAAGGTGGCCGAGTGCGTGAGGACGGGGAGTGTGGAGCCGGTGACG
GGCGGTAGGGGTGGGAAGGGAGGGAGGGAGGAAGGGGCGCTTTCGCCCGG
AGAAATGATTCTTGAGGCTGAGGCACGAAGGGGAGAGGAGGTTGTGCTGC
CGGAAAGAGGAAGTGGGGGAAGTAAGGGAGGAGGACGAGGGGAAGGAGAG
GGGGCGGGGATAAACGGTGCTGCTGGTGTTGATGGGGAAAGAGAGAGGGA
AGAATGCGATGGCGTAATGGCTGCTGCAACGAGGAAAAGCAAACGCAAGG
CAACGGGAGGAGGACGAGGGGGTGGGATAGGTGGGAGGGGTCGTGGCGGT
CGCAGCAAAAAGAAAGCACGGCGGGTGGGCGGTGAAGCGGAAGAGACGCA
TGAAAGTGAGAGCGACGAGGAGGAGGAGGAGAAGAAGGAAGGGAGGTATC
AAAATAGAGGAGAAAGGGACGAGGAGGAGTCTTACGGCCAGGGGCGTGGG
GACGAGGAAGGGATGGAGGATGAGGAGGAAGCGGGAGCGCGTCAGTTGGA
GAGATTGTTTGGGCAGCCGGGCCGGCGTACCGTGGACAGGGCGAGGGCCA
ATACAGCGGCAGTGACGAGAGGGCGAACTCGCCATCAGGGGGGGGATGAG
GACAAGGAGGACGATTTGGGCAGAACTTTTGTCATTCCCTTGACGGCAGG
GGATGTGCAGAACGCCAGCTCGATCCGGTTGTTGGGTGGGTATCAGGGAG
CGGATTACTCCTCCTCGTCGTCGGATGATGATGATGGGAGTGATTAA
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Synonyms
Publications