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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:693285..696259 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02310.1 vs.
Match: EWM27531.1 (general transcription factor polypeptide 5 [Nannochloropsis gaditana]) HSP 1 Score: 341.7 bits (875), Expect = 5.900e-90 Identity = 189/280 (67.50%), Postives = 215/280 (76.79%), Query Frame = 0
Query: 44 AMDIIANGEQKNGAPPASLSLPGCGAGAAADGGAASTAGEEQASSLPMASPHSSSSADDPSTVRLLTRQTGKPLKLKRLLAVDLPVLCSSPMTAVSMLGGMDRLSAACTGNARKLHFYFRPEDKLSIPVPSQGKIPSSRLLLRVRLRKDGTTGDRTVVAKEVVGTISTTFQFTALADFQYLTTQAFLPVGTADVVSKTRLEIVPSSFVPVAHAGNYAYTSLKSSALANQDTARRQGVVIKFGCPIPKAPPAMLVNRPRRRLEKYGQVLEKLQALFDRTRG 324
A D++A EQ+ + L+ G A++ A T E + LP+ +S D +TVRL T + G+PLKLKRLLAVDLPVLCS PMTAVSMLGG+DRLSAACTG RKL F FRP D+LSIP+ SQ KIP+SRLLLRVR+R+ TG R V EVVGT+STTFQF LADFQYLTTQAFLP GT D+VS+ RLEIVP SF+PVAHAGNYAY SLKSSALA+ DTARRQGVVI++GCPIPKAPPAMLVNRPRRR EKYGQVLEKLQALFDR G
Sbjct: 12 ASDVLAPSEQREDSVNVKLTAGEQGICVASNICPAETCMEAEGGILPL------TSKKDHATVRLETSKPGEPLKLKRLLAVDLPVLCSRPMTAVSMLGGLDRLSAACTGKTRKLQFSFRPGDELSIPISSQPKIPASRLLLRVRVRRKQITGQRYAVHTEVVGTVSTTFQFRCLADFQYLTTQAFLPPGTPDLVSQARLEIVPPSFIPVAHAGNYAYVSLKSSALASHDTARRQGVVIRYGCPIPKAPPAMLVNRPRRRSEKYGQVLEKLQALFDRVSG 285
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02310.1 ID=NO09G02310.1|Name=NO09G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2718bp CTTCTGTCTTTTTGTTGCTTTAGTTCTTTCCCAAACCTCGGAGAAACGAT GGGGGCTGACCCACGAGCCCGCCTAAGTAAGAGATCTCATGCATTCGAGT AGTAAAAGTGAATTGGGGATCACCATGAGGTATTTTCCATTATTTACTCA GACAACCGTGAATTTAATTCTTATACGGAAAACTGCTTCAGGGCACCTTT CCGCTTTTGCCGCTGGGATTAATTCATGTAATTAACGCCGCCAAGCATTT GTTTGGCACTGAACCTTCGTCCACACTTACACCGCCGCCTGAATGTGCAT CATAGTCTCACACTCACTCTGCCCTATTGACTTTTTTGCCACCTCCAATA CACAGGTGACGACGACGCAAGAGGTTAAAACGTATCTGCCCGAGGAACCA TCCGCCTCAGCATCTGCAGCTGCCATGGATATTATTGCCAACGGCGAGCA GAAGAATGGAGCACCACCAGCATCACTATCACTACCAGGCTGTGGTGCTG GCGCGGCGGCGGACGGCGGAGCTGCAAGTACTGCAGGAGAAGAGCAAGCA TCATCTCTCCCCATGGCGTCACCACATTCCTCCTCATCGGCAGACGACCC CTCCACCGTTCGCCTCCTCACACGCCAGACCGGGAAACCCTTGAAACTCA AGCGACTGCTCGCTGTGGACTTGCCCGTGCTATGCTCGAGTCCCATGACG GCTGTCAGCATGCTAGGAGGCATGGACCGCTTGAGCGCGGCCTGCACTGG CAACGCCCGCAAGCTCCACTTCTACTTCCGACCTGAGGACAAACTCAGCA TCCCCGTACCCTCTCAAGGCAAGATTCCGTCCTCCCGTCTTCTGCTCCGT GTCCGTCTCCGCAAGGACGGGACGACAGGGGATCGCACTGTGGTGGCCAA GGAGGTGGTGGGTACGATTAGTACCACCTTTCAATTTACGGCCTTGGCTG ATTTCCAATACCTGACTACGCAAGCTTTTCTTCCTGTGGGCACGGCGGAT GTGGTCTCAAAGACACGTTTGGAGATCGTGCCATCTTCGTTTGTGCCAGT GGCCCATGCGGGAAATTACGCGTATACTTCACTAAAGTCCTCGGCGTTGG CAAATCAGGACACGGCGCGACGGCAGGGGGTTGTTATTAAGTTCGGGTGT CCCATCCCTAAGGCTCCTCCGGCAATGTTGGTAAACCGACCGAGGAGGAG GTTGGAGAAGTATGGGCAGGTGTTGGAGAAGCTGCAGGCGTTGTTTGATC GGACACGTGGCGGCCGTGAGATGTGGCAACGCAAGGCTCTCGAGTCCAAA TTCGAGGGGGACGACCTGCACGCTTTTTTGGAGCTGTTGCGCGTGGTGGC GTACAACATGAGTAACGGGCCGTGGCGGGGGTTCTGGGTCAAGTATGGCT ATGATCCGAGTCAGGATTCAGTCGCGCGGCTGTACCAGGCACTGGATGTC AGGTGGAAGGAGGCAGGGCTCGAGAAGCTGAAGACGAGCTACGGGGAGGT CTGGAAGAAGGTGAGGGCGGAGGCGGGCAGGGAGGACGAGGAGGAGGAGG GGGTGGAAGAGTTGAAGTTGTTTGGGTTGCCCGTACGGAGGCAGATGGTG TTCCAGTTATGTGATTTGGGGAGTGCATCGTTGCAGCGGTTGGTGCTGGC GGTGCCGAGAAAGGCGGAATGTACGGCGCAGGGGGGTTGGTTCCGGCTGA GTGACTTGACGGTGTTACGTGGGAAAATTAAGAGATATTTGAGTGGGAAG GTGGCCGAGTGCGTGAGGACGGGGAGTGTGGAGCCGGTGACGGGCGGTAG GGGTGGGAAGGGAGGGAGGGAGGAAGGGGCGCTTTCGCCCGGAGAAATGA TTCTTGAGGCTGAGGCACGAAGGGGAGAGGAGGTTGTGCTGCCGGAAAGA GGAAGTGGGGGAAGTAAGGGAGGAGGACGAGGGGAAGGAGAGGGGGCGGG GATAAACGGTGCTGCTGGTGTTGATGGGGAAAGAGAGAGGGAAGAATGCG ATGGCGTAATGGCTGCTGCAACGAGGAAAAGCAAACGCAAGGCAACGGGA GGAGGACGAGGGGGTGGGATAGGTGGGAGGGGTCGTGGCGGTCGCAGCAA AAAGAAAGCACGGCGGGTGGGCGGTGAAGCGGAAGAGACGCATGAAAGTG AGAGCGACGAGGAGGAGGAGGAGAAGAAGGAAGGGAGGTATCAAAATAGA GGAGAAAGGGACGAGGAGGAGTCTTACGGCCAGGGGCGTGGGGACGAGGA AGGGATGGAGGATGAGGAGGAAGCGGGAGCGCGTCAGTTGGAGAGATTGT TTGGGCAGCCGGGCCGGCGTACCGTGGACAGGGCGAGGGCCAATACAGCG GCAGTGACGAGAGGGCGAACTCGCCATCAGGGGGGGGATGAGGACAAGGA GGACGATTTGGGCAGAACTTTTGTCATTCCCTTGACGGCAGGGGATGTGC AGAACGCCAGCTCGATCCGGTTGTTGGGTGGGTATCAGGGAGCGGATTAC TCCTCCTCGTCGTCGGATGATGATGATGGGAGTGATTAAGAGGTAAAAGA TAAAAGGAAAAAGATATGCATGTTTAGACGCTCGAAACGAAAAGAGATAT TGTACGGCGACGAGGGGACGAAAGGCGAATATAGGACGTTGTACAGAACG CGATTGTAATGTTAGTAAACGTAAAGCAAATGCACCCAGAAAGCATTAAG TTTTCATTTTCTCTGGTT back to topprotein sequence of NO09G02310.1 >NO09G02310.1-protein ID=NO09G02310.1-protein|Name=NO09G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp MCIIVSHSLCPIDFFATSNTQVTTTQEVKTYLPEEPSASASAAAMDIIAN GEQKNGAPPASLSLPGCGAGAAADGGAASTAGEEQASSLPMASPHSSSSA DDPSTVRLLTRQTGKPLKLKRLLAVDLPVLCSSPMTAVSMLGGMDRLSAA CTGNARKLHFYFRPEDKLSIPVPSQGKIPSSRLLLRVRLRKDGTTGDRTV VAKEVVGTISTTFQFTALADFQYLTTQAFLPVGTADVVSKTRLEIVPSSF VPVAHAGNYAYTSLKSSALANQDTARRQGVVIKFGCPIPKAPPAMLVNRP RRRLEKYGQVLEKLQALFDRTRGGREMWQRKALESKFEGDDLHAFLELLR VVAYNMSNGPWRGFWVKYGYDPSQDSVARLYQALDVRWKEAGLEKLKTSY GEVWKKVRAEAGREDEEEEGVEELKLFGLPVRRQMVFQLCDLGSASLQRL VLAVPRKAECTAQGGWFRLSDLTVLRGKIKRYLSGKVAECVRTGSVEPVT GGRGGKGGREEGALSPGEMILEAEARRGEEVVLPERGSGGSKGGGRGEGE GAGINGAAGVDGEREREECDGVMAAATRKSKRKATGGGRGGGIGGRGRGG RSKKKARRVGGEAEETHESESDEEEEEKKEGRYQNRGERDEEESYGQGRG DEEGMEDEEEAGARQLERLFGQPGRRTVDRARANTAAVTRGRTRHQGGDE DKEDDLGRTFVIPLTAGDVQNASSIRLLGGYQGADYSSSSSDDDDGSD* back to topmRNA from alignment at chr9:693285..696259+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02310.1 ID=NO09G02310.1|Name=NO09G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2975bp|location=Sequence derived from alignment at chr9:693285..696259+ (Nannochloropsis oceanica) CTTCTGTCTTTTTGTTGCTTTAGTTCTTTCCCAAACCTCGGAGAAACGAT
GGGGGCTGACCCACGAGCCCGCCTAAGTAAGAGATCTCATGCATTCGAGT
AGTAAAAGTGAATTGGGGATCACCATGAGGTATTTTCCATTATTTACTCA
GACAACCGTGAATTTAATTCTTATACGGAAAACTGCTTCAGGGCACCTTT
CCGCTTTTGCCGCTGGGATTAATTCATGTAATTAACGCCGCCAAGCATTT
GTTTGGCACTGAACCTTCGTCCACACTTACACCGCCGCCTGAATGTGCAT
CATAGTCTCACACTCACTCTGCCCTATTGACTTTTTTGCCACCTCCAATA
CACAGGTGACGACGACGCAAGAGGTTAAAACGTATCTGCCCGAGGAACCA
TCCGCCTCAGCATCTGCAGCTGCCATGGATATTATTGCCAACGGCGAGCA
GAAGAATGGAGCACCACCAGCATCACTATCACTACCAGGCTGTGGTGCTG
GCGCGGCGGCGGACGGCGGAGCTGCAAGTACTGCAGGAGAAGAGCAAGCA
TCATCTCTCCCCATGGCGTCACCACATTCCTCCTCATCGGCAGACGACCC
CTCCACCGTTCGCCTCCTCACACGCCAGACCGGGAAACCCTTGAAACTCA
AGCGACTGCTCGCTGTGGACTTGCCCGTGCTATGCTCGAGTCCCATGACG
GCTGTCAGCATGCTAGGAGGCATGGACCGCTTGAGCGCGGCCTGCACTGG
CAACGCCCGCAAGCTCCACTTCTACTTCCGACCTGAGGACAAACTCAGCA
TCCCCGTACCCTCTCAAGGCAAGATTCCGTCCTCCCGTCTTCTGCTCCGT
GTCCGTCTCCGCAAGGACGGGACGACAGGGGATCGCACTGTGGTGGCCAA
GGAGGTGGTGGGTACGATTAGTACCACCTTTCAATTTACGGCCTTGGCTG
ATTTCCAATACCTGACTACGCAAGCTTTTCTTCCTGTGGGCACGGCGGAT
GTGGTCTCAAAGACACGTTTGGAGATCGTGCCATCTTCGTTTGTGCCAGT
GGCCCATGCGGGAAATTACGCGTATACTTCACTAAAGTCCTCGGCGTTGG
CAAATCAGGACACGGCGCGACGGCAGGGGGTTGTTATTAAGTTCGGGTGT
CCCATCCCTAAGGCTCCTCCGGCAATGTTGGTAAACCGACCGAGGAGGAG
GTTGGAGAAGTATGGGCAGGTGTTGGAGAAGCTGCAGGCGTTGTTTGATC
GGGTGAGTTTTTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGAACTG
AGGGCAAGAAGGAAGGAAACGAGTTGCGAAGTAGGCTTGCATTTTTTGGA
TTCATTCTTTCTGTGTAGAGTGGCGATGGGTGAAGGGTATATGCAGTGAA
GGGATCGTCACACACCTAGCCTACAGAAACGACGCCTAGCCACGCTTAAA
TTCATCCCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAAA
TTCAAGCAGACACGTGGCGGCCGTGAGATGTGGCAACGCAAGGCTCTCGA
GTCCAAATTCGAGGGGGACGACCTGCACGCTTTTTTGGAGCTGTTGCGCG
TGGTGGCGTACAACATGAGTAACGGGCCGTGGCGGGGGTTCTGGGTCAAG
TATGGCTATGATCCGAGTCAGGATTCAGTCGCGCGGCTGTACCAGGCACT
GGATGTCAGGTGGAAGGAGGCAGGGCTCGAGAAGCTGAAGACGAGCTACG
GGGAGGTCTGGAAGAAGGTGAGGGCGGAGGCGGGCAGGGAGGACGAGGAG
GAGGAGGGGGTGGAAGAGTTGAAGTTGTTTGGGTTGCCCGTACGGAGGCA
GATGGTGTTCCAGTTATGTGATTTGGGGAGTGCATCGTTGCAGCGGTTGG
TGCTGGCGGTGCCGAGAAAGGCGGAATGTACGGCGCAGGGGGGTTGGTTC
CGGCTGAGTGACTTGACGGTGTTACGTGGGAAAATTAAGAGATATTTGAG
TGGGAAGGTGGCCGAGTGCGTGAGGACGGGGAGTGTGGAGCCGGTGACGG
GCGGTAGGGGTGGGAAGGGAGGGAGGGAGGAAGGGGCGCTTTCGCCCGGA
GAAATGATTCTTGAGGCTGAGGCACGAAGGGGAGAGGAGGTTGTGCTGCC
GGAAAGAGGAAGTGGGGGAAGTAAGGGAGGAGGACGAGGGGAAGGAGAGG
GGGCGGGGATAAACGGTGCTGCTGGTGTTGATGGGGAAAGAGAGAGGGAA
GAATGCGATGGCGTAATGGCTGCTGCAACGAGGAAAAGCAAACGCAAGGC
AACGGGAGGAGGACGAGGGGGTGGGATAGGTGGGAGGGGTCGTGGCGGTC
GCAGCAAAAAGAAAGCACGGCGGGTGGGCGGTGAAGCGGAAGAGACGCAT
GAAAGTGAGAGCGACGAGGAGGAGGAGGAGAAGAAGGAAGGGAGGTATCA
AAATAGAGGAGAAAGGGACGAGGAGGAGTCTTACGGCCAGGGGCGTGGGG
ACGAGGAAGGGATGGAGGATGAGGAGGAAGCGGGAGCGCGTCAGTTGGAG
AGATTGTTTGGGCAGCCGGGCCGGCGTACCGTGGACAGGGCGAGGGCCAA
TACAGCGGCAGTGACGAGAGGGCGAACTCGCCATCAGGGGGGGGATGAGG
ACAAGGAGGACGATTTGGGCAGAACTTTTGTCATTCCCTTGACGGCAGGG
GATGTGCAGAACGCCAGCTCGATCCGGTTGTTGGGTGGGTATCAGGGAGC
GGATTACTCCTCCTCGTCGTCGGATGATGATGATGGGAGTGATTAAGAGG
TAAAAGATAAAAGGAAAAAGATATGCATGTTTAGACGCTCGAAACGAAAA
GAGATATTGTACGGCGACGAGGGGACGAAAGGCGAATATAGGACGTTGTA
CAGAACGCGATTGTAATGTTAGTAAACGTAAAGCAAATGCACCCAGAAAG
CATTAAGTTTTCATTTTCTCTGGTT back to topCoding sequence (CDS) from alignment at chr9:693285..696259+ >NO09G02310.1 ID=NO09G02310.1|Name=NO09G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=2247bp|location=Sequence derived from alignment at chr9:693285..696259+ (Nannochloropsis oceanica) ATGTGCATCATAGTCTCACACTCACTCTGCCCTATTGACTTTTTTGCCAC CTCCAATACACAGGTGACGACGACGCAAGAGGTTAAAACGTATCTGCCCG AGGAACCATCCGCCTCAGCATCTGCAGCTGCCATGGATATTATTGCCAAC GGCGAGCAGAAGAATGGAGCACCACCAGCATCACTATCACTACCAGGCTG TGGTGCTGGCGCGGCGGCGGACGGCGGAGCTGCAAGTACTGCAGGAGAAG AGCAAGCATCATCTCTCCCCATGGCGTCACCACATTCCTCCTCATCGGCA GACGACCCCTCCACCGTTCGCCTCCTCACACGCCAGACCGGGAAACCCTT GAAACTCAAGCGACTGCTCGCTGTGGACTTGCCCGTGCTATGCTCGAGTC CCATGACGGCTGTCAGCATGCTAGGAGGCATGGACCGCTTGAGCGCGGCC TGCACTGGCAACGCCCGCAAGCTCCACTTCTACTTCCGACCTGAGGACAA ACTCAGCATCCCCGTACCCTCTCAAGGCAAGATTCCGTCCTCCCGTCTTC TGCTCCGTGTCCGTCTCCGCAAGGACGGGACGACAGGGGATCGCACTGTG GTGGCCAAGGAGGTGGTGGGTACGATTAGTACCACCTTTCAATTTACGGC CTTGGCTGATTTCCAATACCTGACTACGCAAGCTTTTCTTCCTGTGGGCA CGGCGGATGTGGTCTCAAAGACACGTTTGGAGATCGTGCCATCTTCGTTT GTGCCAGTGGCCCATGCGGGAAATTACGCGTATACTTCACTAAAGTCCTC GGCGTTGGCAAATCAGGACACGGCGCGACGGCAGGGGGTTGTTATTAAGT TCGGGTGTCCCATCCCTAAGGCTCCTCCGGCAATGTTGGTAAACCGACCG AGGAGGAGGTTGGAGAAGTATGGGCAGGTGTTGGAGAAGCTGCAGGCGTT GTTTGATCGGACACGTGGCGGCCGTGAGATGTGGCAACGCAAGGCTCTCG AGTCCAAATTCGAGGGGGACGACCTGCACGCTTTTTTGGAGCTGTTGCGC GTGGTGGCGTACAACATGAGTAACGGGCCGTGGCGGGGGTTCTGGGTCAA GTATGGCTATGATCCGAGTCAGGATTCAGTCGCGCGGCTGTACCAGGCAC TGGATGTCAGGTGGAAGGAGGCAGGGCTCGAGAAGCTGAAGACGAGCTAC GGGGAGGTCTGGAAGAAGGTGAGGGCGGAGGCGGGCAGGGAGGACGAGGA GGAGGAGGGGGTGGAAGAGTTGAAGTTGTTTGGGTTGCCCGTACGGAGGC AGATGGTGTTCCAGTTATGTGATTTGGGGAGTGCATCGTTGCAGCGGTTG GTGCTGGCGGTGCCGAGAAAGGCGGAATGTACGGCGCAGGGGGGTTGGTT CCGGCTGAGTGACTTGACGGTGTTACGTGGGAAAATTAAGAGATATTTGA GTGGGAAGGTGGCCGAGTGCGTGAGGACGGGGAGTGTGGAGCCGGTGACG GGCGGTAGGGGTGGGAAGGGAGGGAGGGAGGAAGGGGCGCTTTCGCCCGG AGAAATGATTCTTGAGGCTGAGGCACGAAGGGGAGAGGAGGTTGTGCTGC CGGAAAGAGGAAGTGGGGGAAGTAAGGGAGGAGGACGAGGGGAAGGAGAG GGGGCGGGGATAAACGGTGCTGCTGGTGTTGATGGGGAAAGAGAGAGGGA AGAATGCGATGGCGTAATGGCTGCTGCAACGAGGAAAAGCAAACGCAAGG CAACGGGAGGAGGACGAGGGGGTGGGATAGGTGGGAGGGGTCGTGGCGGT CGCAGCAAAAAGAAAGCACGGCGGGTGGGCGGTGAAGCGGAAGAGACGCA TGAAAGTGAGAGCGACGAGGAGGAGGAGGAGAAGAAGGAAGGGAGGTATC AAAATAGAGGAGAAAGGGACGAGGAGGAGTCTTACGGCCAGGGGCGTGGG GACGAGGAAGGGATGGAGGATGAGGAGGAAGCGGGAGCGCGTCAGTTGGA GAGATTGTTTGGGCAGCCGGGCCGGCGTACCGTGGACAGGGCGAGGGCCA ATACAGCGGCAGTGACGAGAGGGCGAACTCGCCATCAGGGGGGGGATGAG GACAAGGAGGACGATTTGGGCAGAACTTTTGTCATTCCCTTGACGGCAGG GGATGTGCAGAACGCCAGCTCGATCCGGTTGTTGGGTGGGTATCAGGGAG CGGATTACTCCTCCTCGTCGTCGGATGATGATGATGGGAGTGATTAA back to top
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