NO09G01130.1, NO09G01130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01130.1
Unique NameNO09G01130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1569
Alignment locationchr9:366596..368409 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:366596..368409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G01130.1 vs.
Match: EWM27667.1 (Ribosomal protein L18e/L15P [Nannochloropsis gaditana])

HSP 1 Score: 279.3 bits (713), Expect = 7.100e-72
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 0 
Query:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKSVNVDKLWSLAGAEAFEAAK--NGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIKAAGGATLLTA 147
            MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTK+VNVDKLWSL GAEA+EAAK   GDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKI+ AGGATLLTA
Sbjct:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
The following BLAST results are available for this feature:
BLAST of NO09G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27667.17.100e-7294.59Ribosomal protein L18e/L15P [Nannochloropsis gadit... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01130NO09G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01130.1NO09G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01130.1.cds1NO09G01130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01130.1.cds2NO09G01130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01130.1.cds3NO09G01130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01130.1 ID=NO09G01130.1|Name=NO09G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
CTGAGGCCGAGAATGCAAGCGAACGGCTCACGAGCCTCGGTCTCCTTCCT
CCTGGTCACCCCTTCTTTCCTGCACAAGCAGTACATGATAGTGCCTTGAT
GCGGCAGGTCACCTTGCTGTCGTGCAGCGTCCTATTTGGCTTTGGTGGTC
TGCGGCGGCCGGACGTTGTACAAGCCGTTAAAGGGCTTGGATGGTGGGGA
GGCAAGAAGCGGGCATGGCGCGGGCTTCTTCGCTGAGGCTGCCTGTGAGG
AGGAGGAGGAGGGTGTAGGAAAAGGGCTTTGCCAACGGAAGTACGGGTAT
AATTCAGCCCTTAGCCGAGCAGCATGATTGGCTGGTGCACGCTCAAGGAC
TGGGAAGCAGCTGAGGCTTCCTACGACGCCTGCCCTCTCTCTGTCTCTGA
ACAAGAGAACTGTCACCACGATCAACTTTGCCTGTCTTACCCCTTTCCCT
GCCTACCTTACACTTGCACAACAACACAGGAAGTGATCGTTCTTCTTGTT
CATCCATGCCTTCGAGACTCTCTAAGAACCGAAAGAAGCGAGGGCACGTC
TCTGCGGGGCACGGGCGTATCGGCAAGCACCGCAAGCATCCGGGTGGGCG
TGGTAATGCTGGTGGTCAGCACCATCACCGCATCTTGATGGATAAGTACC
ACCCTGGTTATTTCGGTAAGGTGGGTATGCGCCACTTCCACGTCCTCAAG
AACCGCACCTACACCAAGTCCGTGAACGTCGACAAGCTCTGGTCCCTTGC
GGGTGCAGAAGCGTTCGAGGCAGCCAAGAATGGGGACAAGGCGCCTGTGC
TGGATGTGACGCAGATGGGTTTTTTCAAAGTGTTAGGCAAGGGGAAGTTG
CCCTCTGTGCCCCTGGTCGTGAAGGCCAAGTACTTTTCCAAGGACGCGGA
GAAGAAGATTAAGGCGGCCGGGGGCGCAACCCTTCTAACGGCGTAAAGAG
TGGAAAGGCTCGCATAAGGGTGGAGACAGGATGGAGGGACAGACAGACGC
GGGGGGCGGCACGACAGACGGACTTTTTGTTGTTGGTAGGAAAAAAGCAA
CTTCACGAGTGGCCACGAGGGTGGGCTCGTGCTTTGCTAATAGAGGACTT
ATTTGAATAAAAAGAAAGAAGTTCGGGTGCCGACCCTTACAGAAGTGGTG
CCGCTGGAGGGGATTTATTTTGTGGAGGGAGCGTCACCCTTGCATTGGTA
ATCACATCTACTTCCACCTGTTCTGTTGATGTCATGAAACGAGTGAGGGC
TTGGAGATACACTCGTCTCCTTTTGTTCATCATCCCACCCTTCTGTATTT
TCCCTTACCCCCCTTTCCCCTCCCCCTGTCGAACGCCCTCCGCCCCTGCA
ACCTCCTCGCTCCTCCACCAGAAGACCCAAGGTCTCCTCAGAAAGAAGCA
GATGCAGTCCATAGCACCTTTATTCAATAAATTATGAATATGCAAAATAG
TCTGTGCATAGCATTGGAGTGGCTGCGCGGGAAGGATTCAGCTGCAGCCC
CGGGTACAGTCTACGCCACAGACCTTGGAAGTATACGAGGAAGAGGAGGA
GAAGGGGGTGAGGAGGAGG
back to top

protein sequence of NO09G01130.1

>NO09G01130.1-protein ID=NO09G01130.1-protein|Name=NO09G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHP
GYFGKVGMRHFHVLKNRTYTKSVNVDKLWSLAGAEAFEAAKNGDKAPVLD
VTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIKAAGGATLLTA*
back to top

mRNA from alignment at chr9:366596..368409+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01130.1 ID=NO09G01130.1|Name=NO09G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at chr9:366596..368409+ (Nannochloropsis oceanica)
CTGAGGCCGAGAATGCAAGCGAACGGCTCACGAGCCTCGGTCTCCTTCCT
CCTGGTCACCCCTTCTTTCCTGCACAAGCAGTACATGATAGTGCCTTGAT
GCGGCAGGTCACCTTGCTGTCGTGCAGCGTCCTATTTGGCTTTGGTGGTC
TGCGGCGGCCGGACGTTGTACAAGCCGTTAAAGGGCTTGGATGGTGGGGA
GGCAAGAAGCGGGCATGGCGCGGGCTTCTTCGCTGAGGCTGCCTGTGAGG
AGGAGGAGGAGGGTGTAGGAAAAGGGCTTTGCCAACGGAAGTACGGGTAT
AATTCAGCCCTTAGCCGAGCAGCATGATTGGCTGGTGCACGCTCAAGGAC
TGGGAAGCAGCTGAGGCTTCCTACGACGCCTGCCCTCTCTCTGTCTCTGA
ACAAGAGAACTGTCACCACGATCAACTTTGCCTGTCTTACCCCTTTCCCT
GCCTACCTTACACTTGCACAACAACACAGGAAGTGATCGTTCTTCTTGTT
CATCCATGGTAAGTGCTACAGCTCAGTCGAGACGAATGGAAGGGAGCGAC
GATTGATCCCAGCATCATCATCAGCCCGCATGCTCATTACCCTTCCTTTC
CTCCCTACAGCCTTCGAGACTCTCTAAGAACCGAAAGAAGCGAGGGCACG
TCTCTGCGGGGCACGGGCGTATCGGCAAGCACCGCAAGCATCCGGGTACG
TCACAGGGATCTGAGGGAGGGGAGGGACGAAGTTGGGGTGGCAAGGATTT
GGAACGCGGAGTAATTACCACTCTCGTACAACACGCGCTCTAATCTTACG
TGTCTCTATTCCTTTTCTCCTCTCTTTCTTTCTCGCAGGTGGGCGTGGTA
ATGCTGGTGGTCAGCACCATCACCGCATCTTGATGGATAAGTACCACCCT
GGTTATTTCGGTAAGGTGGGTATGCGCCACTTCCACGTCCTCAAGAACCG
CACCTACACCAAGTCCGTGAACGTCGACAAGCTCTGGTCCCTTGCGGGTG
CAGAAGCGTTCGAGGCAGCCAAGAATGGGGACAAGGCGCCTGTGCTGGAT
GTGACGCAGATGGGTTTTTTCAAAGTGTTAGGCAAGGGGAAGTTGCCCTC
TGTGCCCCTGGTCGTGAAGGCCAAGTACTTTTCCAAGGACGCGGAGAAGA
AGATTAAGGCGGCCGGGGGCGCAACCCTTCTAACGGCGTAAAGAGTGGAA
AGGCTCGCATAAGGGTGGAGACAGGATGGAGGGACAGACAGACGCGGGGG
GCGGCACGACAGACGGACTTTTTGTTGTTGGTAGGAAAAAAGCAACTTCA
CGAGTGGCCACGAGGGTGGGCTCGTGCTTTGCTAATAGAGGACTTATTTG
AATAAAAAGAAAGAAGTTCGGGTGCCGACCCTTACAGAAGTGGTGCCGCT
GGAGGGGATTTATTTTGTGGAGGGAGCGTCACCCTTGCATTGGTAATCAC
ATCTACTTCCACCTGTTCTGTTGATGTCATGAAACGAGTGAGGGCTTGGA
GATACACTCGTCTCCTTTTGTTCATCATCCCACCCTTCTGTATTTTCCCT
TACCCCCCTTTCCCCTCCCCCTGTCGAACGCCCTCCGCCCCTGCAACCTC
CTCGCTCCTCCACCAGAAGACCCAAGGTCTCCTCAGAAAGAAGCAGATGC
AGTCCATAGCACCTTTATTCAATAAATTATGAATATGCAAAATAGTCTGT
GCATAGCATTGGAGTGGCTGCGCGGGAAGGATTCAGCTGCAGCCCCGGGT
ACAGTCTACGCCACAGACCTTGGAAGTATACGAGGAAGAGGAGGAGAAGG
GGGTGAGGAGGAGG
back to top

Coding sequence (CDS) from alignment at chr9:366596..368409+

>NO09G01130.1 ID=NO09G01130.1|Name=NO09G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=441bp|location=Sequence derived from alignment at chr9:366596..368409+ (Nannochloropsis oceanica)
ATGCCTTCGAGACTCTCTAAGAACCGAAAGAAGCGAGGGCACGTCTCTGC
GGGGCACGGGCGTATCGGCAAGCACCGCAAGCATCCGGGTGGGCGTGGTA
ATGCTGGTGGTCAGCACCATCACCGCATCTTGATGGATAAGTACCACCCT
GGTTATTTCGGTAAGGTGGGTATGCGCCACTTCCACGTCCTCAAGAACCG
CACCTACACCAAGTCCGTGAACGTCGACAAGCTCTGGTCCCTTGCGGGTG
CAGAAGCGTTCGAGGCAGCCAAGAATGGGGACAAGGCGCCTGTGCTGGAT
GTGACGCAGATGGGTTTTTTCAAAGTGTTAGGCAAGGGGAAGTTGCCCTC
TGTGCCCCTGGTCGTGAAGGCCAAGTACTTTTCCAAGGACGCGGAGAAGA
AGATTAAGGCGGCCGGGGGCGCAACCCTTCTAACGGCGTAA
back to top
Synonyms
Publications