NO09G00570.1, NO09G00570.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G00570.1
Unique Name	NO09G00570.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3054
Alignment location	chr9:225112..228604 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:225112..228604 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO09G00570.1 vs.
Match: CBN77223.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.5 bits (288), Expect = 2.900e-22
Identity = 67/231 (29.00%), Postives = 122/231 (52.81%), Query Frame = 0

Query:   79 AWAAPSTTANDKQTTSRLIKKTGVKEEPKSLKEENKDLS--------DVIARGMIRL---------PEIEGYPFGPERPAQLNYALENNDAALLITCYGREGGPVAAKKIKLQGLEFPYTFELTFNNLLFPLTKETWEKDNRAFDDLGISALLDLDGKFSTANENDLLGFGISKPVAIAGSQIRRDALIQVTARTGVKQYTDEE---------QRLLSTIDLELARQAQGG 284
            A+AA    A +      L+KKT   +  +   E  K L         D+IAR ++ +         P+  G+P           A++ +DA L++  +G++G PVAAK++ ++G +FP T ELT ++L FPLTK+ W  D+R+ +D+G++  +D DG+ +T +   L G+G+SKP+ I     R +A +++ A   +K+  ++          +R+ + +D + A+  +GG
Sbjct:   83 AFAADRAGAQELSPAEMLVKKTTDMQRKRLKDESQKQLQGDVTMQEGDLIARVLVSIKQDLYDLGAPDTTGFP-----------AVDTDDARLIVAAFGKDGPPVAAKRLAVKGRQFPVTVELTADDLAFPLTKDAWRLDSRSKEDIGLAVEIDPDGRAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVANPQLKERAEQALPNEGIQQLERVDAMLDYKEAKAPKGG 302

The following BLAST results are available for this feature:

BLAST of NO09G00570.1 vs.

BLAST of NO09G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN77223.1	2.900e-22	29.00	expressed unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G00570	NO09G00570	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00570.1	NO09G00570.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00570.1.cds1	NO09G00570.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00570.1.cds2	NO09G00570.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00570.1.cds3	NO09G00570.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00570.1.cds4	NO09G00570.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:225112..228604-
coding sequence from alignment at chr9:225112..228604-

mRNA sequence

>NO09G00570.1 ID=NO09G00570.1|Name=NO09G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=3054bp
CGGGACCACTGAATCTCTCGTTGTGATGAAGTTGATATTATAGTACTTTT
CTTTTATTCAGGACTCATTCACATACAGTATGCTACACTTCTCAATCTTG
AGTTGACACGGATACTGCTGCTGCTGCTGCTGCTTCCGTGCTACCACTTC
CTCCTCCTGAGGCATCCCACTCAGCTTGAACCGACCAAGGTAAAATATCT
CGAATGCTAAGTACGTGATACTGCCTCCGCAACCTCTGTTGTGTATGGCC
CGATGCCGGCGCCTTGGTGGCTGCTGCCGCTGCCGTTGCCGTTAACAGCG
CAGCATCTTGACTTGCCGCTGCCGAGAAGGGGACGGTAGAGAAGTAGCCA
TTGCATGGGTTACAATCACCATCGACCGTGCTTATACCTACCGCTGCTGT
CCCTCCGATACCTCCTACATCCTGGAAATGAGGAGAGGGCGCAGGTCCCA
CGGCGGTACACCACAAATAACATCCATCCGGCGGCAAAGCCAAAAACCGA
AGCTTCCAATCGGCCATGCCATACCCATCCATCATCAACTCCTCCTCTTC
CCCTTCATCTTCTACCCTCTTCAAATAATCCTTCCCAACGTCCAGGATAC
TGCATTCCAATCGTCGAATGGGAAACGACAATCCCACTCCCAATGCCTTG
ATATAAGCCTCCTTCATCGCCCACACCCGGAAGAACGCACGATACTGAGC
AGTCTCCCCTTTCGGTGCCAATCCCTCCAATCCATCGCGCTCTGCCGGCG
TCAAATGACGGCGGAAAAGGTCGATATACTCCGATGCTGTCATGGCCTGG
AAAGGCCGATCCTGCAAGCACACCACATCTGTCCCTACTGTACCCGAAGG
CTCGCTGGCCAGCACTACCCAATCCCCGTGATGCGACACATTGTAGTTCC
ACCCAGGAAGCCGTGTCCCCGCCGCTTCCACATAGGGCTTGTTATATGGT
TGTGTGCGTTGGATTAGGATGTCCTTGAAGCGCTGACCCAAAACCCAACT
GGTAGCAGCGCGCTGCAGTAGCAGGCTTCCCAACGCCAGCCGCCTGTCCT
TGTCGTGGTAGAAACCCTGCAGCTTGTGTACATCGCCCTCGGGTAAGAGC
GAAAGAAGTAGCTCCCGTTGTCCGGGGGTTATGGTCTCCGTACCAATCTG
CAGGCCCAGCCGGAGTATGCCCTGCTCGAAAGCGGGGGCTCGACCATCCA
CAATCATACATGCGGGGATGGGCGGCGTGTGAGGGTCTGCGACTGCAACT
GCGGCGGGGGCGGCCGATGGTGGAGCTGGATTCGTGGTCGCCGCTGCTGC
GGGTAGTGATATGGATGGGACCAGAGTAGCTACGGCCGCGACGGGCCAGC
AACACGGACAGCAGTATGGCCCCATTTGCTGTCGAGGCGGGAGCGAAGGA
AGGAGGAGGTTGCTTTGAGGCTTGTTGGTTGTGAGGATTGCACTGGCAGC
AGTCTGTGCGACCTTGCTCGAGCTTATACCCTATCCGTGGCCCGCTCAGT
CCTGGCTTGGTCGCCATGGCAGCATTTGGACTGTGCGTGGCGTGTGCGGG
TTGTACCTCAAGACGGTTCAGAGAGCGAGCATCATGTTGACCCTCACTCC
CGACCTCAACCAGCAGCGCCTTAGTCTCCTCCTGACTGGACAATGCCATC
CATTACTCCCACCACTGCGCACACAACACACAGCGACCTTGTCTAAGCAG
TCAGCAGAATGATTCGAGGTGGTGTCGTGGCAGCAGCGGGGCTGTTGCTT
TTGAGCCCGTGCTTTGCCTTCATGCCTACGCCTCTTGCCCATAGAGGGGC
CAGCAGAATGGTTATGCAGGCCGACAAGGGCGAGCGAGGCAAGAGTAAGA
TCCCAGCTGTCGGCATGTCTGTGGTGGGGCGTTCGCTTGCCGCAACCGGT
GTGCTATTGTCAACCTTCCTGGGGGGCGGAGGACTGCCTGGTGCGTGGGC
AGCGCCATCGACGACGGCTAATGACAAGCAGACGACATCAAGACTGATCA
AGAAAACAGGAGTCAAGGAGGAGCCGAAATCGCTGAAAGAGGAGAACAAG
GATCTGTCCGACGTGATTGCCCGGGGCATGATTCGGCTGCCGGAGATTGA
GGGTTATCCCTTTGGGCCTGAGCGACCGGCACAACTGAACTACGCGCTGG
AGAACAATGATGCCGCCCTCCTCATCACGTGCTATGGGCGGGAAGGTGGA
CCAGTAGCCGCGAAAAAGATCAAGCTGCAAGGCTTAGAATTTCCCTACAC
CTTCGAGCTCACCTTCAACAATTTGCTCTTCCCCCTGACTAAGGAAACCT
GGGAGAAAGATAACCGCGCATTTGACGACCTTGGTATCTCCGCCTTGCTA
GACCTGGACGGAAAGTTCTCCACTGCCAATGAAAATGATCTTTTGGGCTT
CGGGATTTCCAAGCCTGTGGCTATTGCAGGCAGCCAGATCCGCCGGGACG
CCCTTATCCAAGTGACGGCCCGCACGGGCGTGAAGCAATACACAGACGAA
GAGCAACGCCTCCTGTCCACGATTGATTTGGAGTTGGCCCGGCAGGCTCA
AGGGGGGAGTTTGGCGCAGCTGGCACAGGAGAATGGTGGCGGCAACATTG
AGGTGCTCACAAACCAACGCCAGACCGAGCCTGCAGATCCAGCTTCAAGT
GTAAAACGCGAATGATAGAAAGCAGGGCAGGGGAGAGGAAGGGAAAGGAG
GAGAGCTTTTCTTATTTTTTGTCCACTCGGTGACCGACAAAAAATGCGTG
AAGGGAAAAAAAGAAAGAGCTGACTGCTTTCCGACTAGTTTACTAGGTCC
CAACAACAGCACCGCGCGCGCCTAAAAGAAAAAAGAGTATCCCGCCTTAC
TTTGTTTTGTTTTTTTCTTTCGGTGATATTGCCCGTGAAGGTGAGTGGGT
GGGCACATATCCAGGGAGGGGGGAAGAGGGGAGGTCGAAATGGCGAGAAG
CTCAACTTGGGCCTGCCTCTGGATACACACGCACACGTGTTGTGCCTGGT
CCAAGCCCCATTCTAGGTGGCAAATTCTCTCCAAATCCTCAGACCTGCTT
TATG

protein sequence of NO09G00570.1

>NO09G00570.1-protein ID=NO09G00570.1-protein|Name=NO09G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MIRGGVVAAAGLLLLSPCFAFMPTPLAHRGASRMVMQADKGERGKSKIPA
VGMSVVGRSLAATGVLLSTFLGGGGLPGAWAAPSTTANDKQTTSRLIKKT
GVKEEPKSLKEENKDLSDVIARGMIRLPEIEGYPFGPERPAQLNYALENN
DAALLITCYGREGGPVAAKKIKLQGLEFPYTFELTFNNLLFPLTKETWEK
DNRAFDDLGISALLDLDGKFSTANENDLLGFGISKPVAIAGSQIRRDALI
QVTARTGVKQYTDEEQRLLSTIDLELARQAQGGSLAQLAQENGGGNIEVL
TNQRQTEPADPASSVKRE*

mRNA from alignment at chr9:225112..228604-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G00570.1 ID=NO09G00570.1|Name=NO09G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=3493bp|location=Sequence derived from alignment at chr9:225112..228604- (Nannochloropsis oceanica)
CGGGACCACTGAATCTCTCGTTGTGATGAAGTTGATATTATAGTACTTTT
CTTTTATTCAGGACTCATTCACATACAGTATGCTACACTTCTCAATCTTG
AGTTGACACGGATACTGCTGCTGCTGCTGCTGCTTCCGTGCTACCACTTC
CTCCTCCTGAGGCATCCCACTCAGCTTGAACCGACCAAGGTAAAATATCT
CGAATGCTAAGTACGTGATACTGCCTCCGCAACCTCTGTTGTGTATGGCC
CGATGCCGGCGCCTTGGTGGCTGCTGCCGCTGCCGTTGCCGTTAACAGCG
CAGCATCTTGACTTGCCGCTGCCGAGAAGGGGACGGTAGAGAAGTAGCCA
TTGCATGGGTTACAATCACCATCGACCGTGCTTATACCTACCGCTGCTGT
CCCTCCGATACCTCCTACATCCTGGAAATGAGGAGAGGGCGCAGGTCCCA
CGGCGGTACACCACAAATAACATCCATCCGGCGGCAAAGCCAAAAACCGA
AGCTTCCAATCGGCCATGCCATACCCATCCATCATCAACTCCTCCTCTTC
CCCTTCATCTTCTACCCTCTTCAAATAATCCTTCCCAACGTCCAGGATAC
TGCATTCCAATCGTCGAATGGGAAACGACAATCCCACTCCCAATGCCTTG
ATATAAGCCTCCTTCATCGCCCACACCCGGAAGAACGCACGATACTGAGC
AGTCTCCCCTTTCGGTGCCAATCCCTCCAATCCATCGCGCTCTGCCGGCG
TCAAATGACGGCGGAAAAGGTCGATATACTCCGATGCTGTCATGGCCTGG
AAAGGCCGATCCTGCAAGCACACCACATCTGTCCCTACTGTACCCGAAGG
CTCGCTGGCCAGCACTACCCAATCCCCGTGATGCGACACATTGTAGTTCC
ACCCAGGAAGCCGTGTCCCCGCCGCTTCCACATAGGGCTTGTTATATGGT
TGTGTGCGTTGGATTAGGATGTCCTTGAAGCGCTGACCCAAAACCCAACT
GGTAGCAGCGCGCTGCAGTAGCAGGCTTCCCAACGCCAGCCGCCTGTCCT
TGTCGTGGTAGAAACCCTGCAGCTTGTGTACATCGCCCTCGGGTAAGAGC
GAAAGAAGTAGCTCCCGTTGTCCGGGGGTTATGGTCTCCGTACCAATCTG
CAGGCCCAGCCGGAGTATGCCCTGCTCGAAAGCGGGGGCTCGACCATCCA
CAATCATACATGCGGGGATGGGCGGCGTGTGAGGGTCTGCGACTGCAACT
GCGGCGGGGGCGGCCGATGGTGGAGCTGGATTCGTGGTCGCCGCTGCTGC
GGGTAGTGATATGGATGGGACCAGAGTAGCTACGGCCGCGACGGGCCAGC
AACACGGACAGCAGTATGGCCCCATTTGCTGTCGAGGCGGGAGCGAAGGA
AGGAGGAGGTTGCTTTGAGGCTTGTTGGTTGTGAGGATTGCACTGGCAGC
AGTCTGTGCGACCTTGCTCGAGCTTATACCCTATCCGTGGCCCGCTCAGT
CCTGGCTTGGTCGCCATGGCAGCATTTGGACTGTGCGTGGCGTGTGCGGG
TTGTACCTCAAGACGGTTCAGAGAGCGAGCATCATGTTGACCCTCACTCC
CGACCTCAACCAGCAGCGCCTTAGTCTCCTCCTGACTGGACAATGCCATC
CATTACTCCCACCACTGCGCACACAACACACAGCGACCTTGTCTAAGCAG
TCAGCAGAATGATTCGAGGTGGTGTCGTGGCAGCAGCGGGGCTGTTGCTT
TTGAGCCCGTGCTTTGCCTTCATGCCTACGCCTCTTGCCCATAGAGGGGC
CAGCAGAATGGTTATGCAGGCCGACAAGGGCGAGCGAGGCAAGAGTAAGA
TCCCAGCTGTCGGCATGTCTGTGGTGGGGCGTTCGCTTGCCGCAACCGGT
GTGCTATTGTCAACCTTCCTGGGGGGCGGAGGACTGCCTGGTGCGTGGGC
AGCGCCATCGACGACGGCTAATGACAAGCAGACGACATCAAGACTGGTGC
GTACACATTGATGGAGGTCTAGACGTGGCGTGGCGTCGCGTGATGGTTTT
GTGGCTGTGTGATACACATGCTCGGGCCCTCTACTGCCCCCCGCGTTGCT
ATCTTCTCTATCCACGATACTCCTCTCCCTTCCCATCACTCCAACCTGTT
CCCTCATCTCTTCCCGATTACACATCAATTCAGATCAAGAAAACAGGAGT
CAAGGAGGAGCCGAAATCGCTGAAAGAGGAGAACAAGGATCTGTCCGACG
TGATTGCCCGGGGCATGATTCGGCTGCCGGAGATTGAGGGTTATCCCTTT
GGGCCTGAGCGACCGGCACAACTGAACTACGCGCTGGAGAACAATGATGC
CGCCCTCCTCATCACGTGCTATGGGCGGGAAGGTGGACCAGTAGCCGCGA
AAAAGTGAGTTCGACTATCACGGCTGATGGTATATCCGTTCGCATTCCTG
GAAACTCACTCGCGTGCTTCTCCCCACCTCCCTCTCTCTCTTGATGACAG
GATCAAGCTGCAAGGCTTAGAATTTCCCTACACCTTCGAGCTCACCTTCA
ACAATTTGCTCTTCCCCCTGACTAAGGAAACCTGGGAGAAAGATAACCGC
GCATTTGACGACCTTGGTATCTCCGCCTTGCTAGACCTGGACGGAAAGTT
CTCCACTGCCAATGAAAATGATCTTTTGGGCTTCGGGATTTCCAAGCCTG
TGGCTATTGCAGGCAGCCAGGTACGAGAATGGCGGGTCGAGAGTGTCCTC
GTTTAGTACGGGAGTGGTAAACGTGTTGCAATTCAGTTATTTTTTGGCCC
TGAGCTCCTTGGTGTATCTCATACTCAAATGAACCCTTGCTTCCTGGCTT
TTCCTTTCTTTCTTCTTCATTTCTAGATCCGCCGGGACGCCCTTATCCAA
GTGACGGCCCGCACGGGCGTGAAGCAATACACAGACGAAGAGCAACGCCT
CCTGTCCACGATTGATTTGGAGTTGGCCCGGCAGGCTCAAGGGGGGAGTT
TGGCGCAGCTGGCACAGGAGAATGGTGGCGGCAACATTGAGGTGCTCACA
AACCAACGCCAGACCGAGCCTGCAGATCCAGCTTCAAGTGTAAAACGCGA
ATGATAGAAAGCAGGGCAGGGGAGAGGAAGGGAAAGGAGGAGAGCTTTTC
TTATTTTTTGTCCACTCGGTGACCGACAAAAAATGCGTGAAGGGAAAAAA
AGAAAGAGCTGACTGCTTTCCGACTAGTTTACTAGGTCCCAACAACAGCA
CCGCGCGCGCCTAAAAGAAAAAAGAGTATCCCGCCTTACTTTGTTTTGTT
TTTTTCTTTCGGTGATATTGCCCGTGAAGGTGAGTGGGTGGGCACATATC
CAGGGAGGGGGGAAGAGGGGAGGTCGAAATGGCGAGAAGCTCAACTTGGG
CCTGCCTCTGGATACACACGCACACGTGTTGTGCCTGGTCCAAGCCCCAT
TCTAGGTGGCAAATTCTCTCCAAATCCTCAGACCTGCTTTATG

Coding sequence (CDS) from alignment at chr9:225112..228604-

>NO09G00570.1 ID=NO09G00570.1|Name=NO09G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr9:225112..228604- (Nannochloropsis oceanica)
ATGATTCGAGGTGGTGTCGTGGCAGCAGCGGGGCTGTTGCTTTTGAGCCC
GTGCTTTGCCTTCATGCCTACGCCTCTTGCCCATAGAGGGGCCAGCAGAA
TGGTTATGCAGGCCGACAAGGGCGAGCGAGGCAAGAGTAAGATCCCAGCT
GTCGGCATGTCTGTGGTGGGGCGTTCGCTTGCCGCAACCGGTGTGCTATT
GTCAACCTTCCTGGGGGGCGGAGGACTGCCTGGTGCGTGGGCAGCGCCAT
CGACGACGGCTAATGACAAGCAGACGACATCAAGACTGATCAAGAAAACA
GGAGTCAAGGAGGAGCCGAAATCGCTGAAAGAGGAGAACAAGGATCTGTC
CGACGTGATTGCCCGGGGCATGATTCGGCTGCCGGAGATTGAGGGTTATC
CCTTTGGGCCTGAGCGACCGGCACAACTGAACTACGCGCTGGAGAACAAT
GATGCCGCCCTCCTCATCACGTGCTATGGGCGGGAAGGTGGACCAGTAGC
CGCGAAAAAGATCAAGCTGCAAGGCTTAGAATTTCCCTACACCTTCGAGC
TCACCTTCAACAATTTGCTCTTCCCCCTGACTAAGGAAACCTGGGAGAAA
GATAACCGCGCATTTGACGACCTTGGTATCTCCGCCTTGCTAGACCTGGA
CGGAAAGTTCTCCACTGCCAATGAAAATGATCTTTTGGGCTTCGGGATTT
CCAAGCCTGTGGCTATTGCAGGCAGCCAGATCCGCCGGGACGCCCTTATC
CAAGTGACGGCCCGCACGGGCGTGAAGCAATACACAGACGAAGAGCAACG
CCTCCTGTCCACGATTGATTTGGAGTTGGCCCGGCAGGCTCAAGGGGGGA
GTTTGGCGCAGCTGGCACAGGAGAATGGTGGCGGCAACATTGAGGTGCTC
ACAAACCAACGCCAGACCGAGCCTGCAGATCCAGCTTCAAGTGTAAAACG
CGAATGA

Synonyms

Publications