NO08G02490.1, NO08G02490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02490.1
Unique NameNO08G02490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1831
Alignment locationchr8:717068..718898 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:717068..718898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02490.1 vs.
Match: XP_005856157.1 (c2h2-type zinc finger-containing protein, partial [Nannochloropsis gaditana CCMP526]; EKU20202.1 c2h2-type zinc finger-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 496.1 bits (1276), Expect = 1.100e-136
Identity = 268/465 (57.63%), Postives = 319/465 (68.60%), Query Frame = 0 
Query:    1 MDLLKCQTCGLGFDSSVAHKEHYRMELHRYNLKRRTNDLGPVSETEYQRRKAAAQSLAGMSKSTTEAFHAKCHLCNRSFASKATLSQHLKSRKHLTMAEGDNGGTPTKVKATVAPSTPTTIKVPGSMDEAAMDEASNKAGE-EEGGAAAPVDLSPEVCIFCNERCPSVESTVLHMWKQHGFHLPDGEYLVDVHGLLRYCAEKVKVGCLCLYCNGKGKGFLTARDVQRHMHSKSHCKLLYEEGEDLHEFRLFYDFSASHALPPCSKKMTRGKFKAQEDG----------MDDDEQSLETVDSDYEEVSGDG-----DEGMEADKGEDEDDEDEDVEQMLRQMALQVSELGELMLPDGRCLGRREYQRYYKQRYRPEDVRSSLVASKHESAGRLWPGMESNAVVKAGGTGSLMVRGGAGGEGLWGPDKAARKAVMKVTAAARRVHDKYRLRKEISTNKFHKRPQIDG 450
            M+LLKCQTCGLGF+SS AHK+HYR ELHRYN KRRTN+LGPVSE +YQRRKAAAQSL G   S +  FH KC +CNR+FASKATL QHLKSRKH    E     T T  K+ +       +   G        E  +++G  EE     P DL PEVCIFCN R  +VES +LHMWKQHGFHLPDGE+LVD+HGLLRYCAEKVK+GC+CLYCNGKGK FL+ RD Q HM +KSHCKLLYEEGEDLHEFR FYDFSAS+ +    ++    +    + G          +DDD+ SLETVDS YEE+S  G     D+G    KG        ++EQ+    A++VS LGEL+LPDGR LG RE  RYYKQ YRPED R +L+ASK E AGR+  G   +A+V+ G   ++  R G   EG+   D+AAR+AVMKVTAA RR  +KYRLR+EISTNKFHKRPQIDG
Sbjct:   19 MELLKCQTCGLGFNSSSAHKDHYRSELHRYNSKRRTNELGPVSEHDYQRRKAAAQSLTGSEGSASHGFHGKCQVCNRTFASKATLQQHLKSRKHAYATERS---TQTTSKSEIVSEGGVVMAALGG------SERKDRSGTTEEDDTVGPADLDPEVCIFCNRRYFTVESAILHMWKQHGFHLPDGEFLVDLHGLLRYCAEKVKIGCMCLYCNGKGKSFLSPRDAQHHMEAKSHCKLLYEEGEDLHEFRPFYDFSASYQVLDSRRRYQEEEKMTDKTGPKSSGIDLGAVDDDDMSLETVDSAYEELSDGGGMTTMDDGGNVGKG-------GEMEQIFDHAAMRVSHLGELVLPDGRSLGCRENNRYYKQYYRPEDTRVALIASKQEKAGRMASGSHDSAMVRTGNNTNVAYRSGVSREGMLENDRAARRAVMKVTAAVRRTCEKYRLRREISTNKFHKRPQIDG 467
The following BLAST results are available for this feature:
BLAST of NO08G02490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856157.11.100e-13657.63c2h2-type zinc finger-containing protein, partial ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02490NO08G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02490.1NO08G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02490.1.cds1NO08G02490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02490.1 ID=NO08G02490.1|Name=NO08G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp
AAATAATTGAAATGCGTGAGTGTGAGGCATCCTGTGCTCAAACGAGGAAC
TTTGAGACTTGTGGCAGAGCCAAGAGGGTAGCCCCAACTCGCACCAGGAA
AATCAAAATCTGACCTGCACCCTGACCACCAAAGACCCCTGGATGTAGTC
TGATGTCCTTGCCAAGGCACCAACTGGAAGGGCTAAGTGAGACAGCTCTC
GTTTTGTCAATCTATCCACGCATCACCACTCAATCAAAACACATCCCGTC
CGCGTACGCACCGCAGCACCTTGCCCGCCGGCTTCCCCACACCGCGCAAC
GCACGGGGTCTTTTTCACCCAACGCACGCGCACTCGGGTAACATGGACCT
CCTCAAATGTCAGACATGTGGCCTGGGATTCGATTCATCCGTCGCTCACA
AAGAGCACTATCGCATGGAGCTCCACCGATACAATCTGAAGCGCCGCACC
AACGACCTGGGGCCTGTCAGTGAAACTGAATATCAACGCCGCAAAGCCGC
CGCCCAGAGCTTGGCTGGGATGAGCAAATCGACTACCGAGGCCTTTCACG
CTAAATGCCATCTCTGCAACCGCTCCTTTGCCTCTAAGGCCACGCTGAGC
CAGCATCTCAAGTCCCGCAAGCACCTCACCATGGCGGAGGGCGACAACGG
TGGTACCCCCACCAAGGTAAAAGCTACTGTAGCGCCCTCCACCCCAACGA
CGATCAAGGTACCCGGCTCTATGGATGAGGCGGCCATGGACGAGGCCAGC
AATAAGGCAGGGGAGGAGGAAGGCGGGGCTGCTGCACCGGTAGACCTGAG
CCCTGAGGTTTGCATCTTTTGCAACGAGCGATGCCCGAGCGTGGAGTCAA
CTGTGTTGCACATGTGGAAGCAGCATGGTTTTCACTTACCTGATGGGGAG
TATCTGGTGGACGTGCATGGTTTGCTGCGATACTGCGCGGAGAAGGTGAA
GGTTGGCTGTTTGTGTCTGTATTGTAATGGTAAGGGTAAGGGGTTTCTGA
CGGCTCGGGACGTGCAGCGACACATGCATTCCAAGAGCCACTGCAAGCTC
TTGTATGAGGAGGGAGAAGATCTTCATGAATTTCGTCTTTTTTATGATTT
TAGTGCCTCGCATGCCCTCCCTCCGTGTAGCAAGAAGATGACAAGGGGCA
AGTTTAAGGCGCAGGAGGATGGGATGGATGACGACGAGCAATCACTAGAG
ACGGTGGATTCGGACTATGAAGAGGTGAGCGGTGATGGCGACGAGGGCAT
GGAAGCTGATAAGGGAGAGGACGAGGACGACGAGGACGAGGATGTGGAGC
AAATGCTGCGCCAGATGGCTTTGCAAGTCTCGGAGTTGGGGGAGTTGATG
CTACCGGATGGACGGTGCTTGGGCCGCCGTGAGTATCAACGGTATTACAA
GCAGCGGTATCGTCCCGAGGACGTCCGATCGTCGTTGGTGGCGTCGAAGC
ATGAGTCAGCTGGGCGGTTGTGGCCAGGAATGGAGAGCAATGCGGTTGTG
AAGGCGGGAGGGACAGGGAGCTTGATGGTGCGTGGTGGGGCGGGGGGGGA
GGGGTTATGGGGGCCTGATAAGGCGGCGCGGAAGGCGGTGATGAAGGTAA
CGGCGGCGGCACGACGGGTTCATGATAAATACAGGTTACGGAAGGAGATC
AGCACAAATAAGTTCCACAAGCGGCCTCAGATTGACGGCTAGAGTGTGAG
TGTTTGTATTTGTGTTTGTGTACTGAGACGGACGCCTTAGGAGGAAGGTG
GACGAGAACAAAGATATTAGATAAATACAAGCGAAGAGGAGTGCCAAAAA
AGCAAGCAAGAGAGTGTCCTCCATTTTCCGG
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protein sequence of NO08G02490.1

>NO08G02490.1-protein ID=NO08G02490.1-protein|Name=NO08G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MDLLKCQTCGLGFDSSVAHKEHYRMELHRYNLKRRTNDLGPVSETEYQRR
KAAAQSLAGMSKSTTEAFHAKCHLCNRSFASKATLSQHLKSRKHLTMAEG
DNGGTPTKVKATVAPSTPTTIKVPGSMDEAAMDEASNKAGEEEGGAAAPV
DLSPEVCIFCNERCPSVESTVLHMWKQHGFHLPDGEYLVDVHGLLRYCAE
KVKVGCLCLYCNGKGKGFLTARDVQRHMHSKSHCKLLYEEGEDLHEFRLF
YDFSASHALPPCSKKMTRGKFKAQEDGMDDDEQSLETVDSDYEEVSGDGD
EGMEADKGEDEDDEDEDVEQMLRQMALQVSELGELMLPDGRCLGRREYQR
YYKQRYRPEDVRSSLVASKHESAGRLWPGMESNAVVKAGGTGSLMVRGGA
GGEGLWGPDKAARKAVMKVTAAARRVHDKYRLRKEISTNKFHKRPQIDG*
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mRNA from alignment at chr8:717068..718898+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02490.1 ID=NO08G02490.1|Name=NO08G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr8:717068..718898+ (Nannochloropsis oceanica)
AAATAATTGAAATGCGTGAGTGTGAGGCATCCTGTGCTCAAACGAGGAAC
TTTGAGACTTGTGGCAGAGCCAAGAGGGTAGCCCCAACTCGCACCAGGAA
AATCAAAATCTGACCTGCACCCTGACCACCAAAGACCCCTGGATGTAGTC
TGATGTCCTTGCCAAGGCACCAACTGGAAGGGCTAAGTGAGACAGCTCTC
GTTTTGTCAATCTATCCACGCATCACCACTCAATCAAAACACATCCCGTC
CGCGTACGCACCGCAGCACCTTGCCCGCCGGCTTCCCCACACCGCGCAAC
GCACGGGGTCTTTTTCACCCAACGCACGCGCACTCGGGTAACATGGACCT
CCTCAAATGTCAGACATGTGGCCTGGGATTCGATTCATCCGTCGCTCACA
AAGAGCACTATCGCATGGAGCTCCACCGATACAATCTGAAGCGCCGCACC
AACGACCTGGGGCCTGTCAGTGAAACTGAATATCAACGCCGCAAAGCCGC
CGCCCAGAGCTTGGCTGGGATGAGCAAATCGACTACCGAGGCCTTTCACG
CTAAATGCCATCTCTGCAACCGCTCCTTTGCCTCTAAGGCCACGCTGAGC
CAGCATCTCAAGTCCCGCAAGCACCTCACCATGGCGGAGGGCGACAACGG
TGGTACCCCCACCAAGGTAAAAGCTACTGTAGCGCCCTCCACCCCAACGA
CGATCAAGGTACCCGGCTCTATGGATGAGGCGGCCATGGACGAGGCCAGC
AATAAGGCAGGGGAGGAGGAAGGCGGGGCTGCTGCACCGGTAGACCTGAG
CCCTGAGGTTTGCATCTTTTGCAACGAGCGATGCCCGAGCGTGGAGTCAA
CTGTGTTGCACATGTGGAAGCAGCATGGTTTTCACTTACCTGATGGGGAG
TATCTGGTGGACGTGCATGGTTTGCTGCGATACTGCGCGGAGAAGGTGAA
GGTTGGCTGTTTGTGTCTGTATTGTAATGGTAAGGGTAAGGGGTTTCTGA
CGGCTCGGGACGTGCAGCGACACATGCATTCCAAGAGCCACTGCAAGCTC
TTGTATGAGGAGGGAGAAGATCTTCATGAATTTCGTCTTTTTTATGATTT
TAGTGCCTCGCATGCCCTCCCTCCGTGTAGCAAGAAGATGACAAGGGGCA
AGTTTAAGGCGCAGGAGGATGGGATGGATGACGACGAGCAATCACTAGAG
ACGGTGGATTCGGACTATGAAGAGGTGAGCGGTGATGGCGACGAGGGCAT
GGAAGCTGATAAGGGAGAGGACGAGGACGACGAGGACGAGGATGTGGAGC
AAATGCTGCGCCAGATGGCTTTGCAAGTCTCGGAGTTGGGGGAGTTGATG
CTACCGGATGGACGGTGCTTGGGCCGCCGTGAGTATCAACGGTATTACAA
GCAGCGGTATCGTCCCGAGGACGTCCGATCGTCGTTGGTGGCGTCGAAGC
ATGAGTCAGCTGGGCGGTTGTGGCCAGGAATGGAGAGCAATGCGGTTGTG
AAGGCGGGAGGGACAGGGAGCTTGATGGTGCGTGGTGGGGCGGGGGGGGA
GGGGTTATGGGGGCCTGATAAGGCGGCGCGGAAGGCGGTGATGAAGGTAA
CGGCGGCGGCACGACGGGTTCATGATAAATACAGGTTACGGAAGGAGATC
AGCACAAATAAGTTCCACAAGCGGCCTCAGATTGACGGCTAGAGTGTGAG
TGTTTGTATTTGTGTTTGTGTACTGAGACGGACGCCTTAGGAGGAAGGTG
GACGAGAACAAAGATATTAGATAAATACAAGCGAAGAGGAGTGCCAAAAA
AGCAAGCAAGAGAGTGTCCTCCATTTTCCGG
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Coding sequence (CDS) from alignment at chr8:717068..718898+

>NO08G02490.1 ID=NO08G02490.1|Name=NO08G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr8:717068..718898+ (Nannochloropsis oceanica)
ATGGACCTCCTCAAATGTCAGACATGTGGCCTGGGATTCGATTCATCCGT
CGCTCACAAAGAGCACTATCGCATGGAGCTCCACCGATACAATCTGAAGC
GCCGCACCAACGACCTGGGGCCTGTCAGTGAAACTGAATATCAACGCCGC
AAAGCCGCCGCCCAGAGCTTGGCTGGGATGAGCAAATCGACTACCGAGGC
CTTTCACGCTAAATGCCATCTCTGCAACCGCTCCTTTGCCTCTAAGGCCA
CGCTGAGCCAGCATCTCAAGTCCCGCAAGCACCTCACCATGGCGGAGGGC
GACAACGGTGGTACCCCCACCAAGGTAAAAGCTACTGTAGCGCCCTCCAC
CCCAACGACGATCAAGGTACCCGGCTCTATGGATGAGGCGGCCATGGACG
AGGCCAGCAATAAGGCAGGGGAGGAGGAAGGCGGGGCTGCTGCACCGGTA
GACCTGAGCCCTGAGGTTTGCATCTTTTGCAACGAGCGATGCCCGAGCGT
GGAGTCAACTGTGTTGCACATGTGGAAGCAGCATGGTTTTCACTTACCTG
ATGGGGAGTATCTGGTGGACGTGCATGGTTTGCTGCGATACTGCGCGGAG
AAGGTGAAGGTTGGCTGTTTGTGTCTGTATTGTAATGGTAAGGGTAAGGG
GTTTCTGACGGCTCGGGACGTGCAGCGACACATGCATTCCAAGAGCCACT
GCAAGCTCTTGTATGAGGAGGGAGAAGATCTTCATGAATTTCGTCTTTTT
TATGATTTTAGTGCCTCGCATGCCCTCCCTCCGTGTAGCAAGAAGATGAC
AAGGGGCAAGTTTAAGGCGCAGGAGGATGGGATGGATGACGACGAGCAAT
CACTAGAGACGGTGGATTCGGACTATGAAGAGGTGAGCGGTGATGGCGAC
GAGGGCATGGAAGCTGATAAGGGAGAGGACGAGGACGACGAGGACGAGGA
TGTGGAGCAAATGCTGCGCCAGATGGCTTTGCAAGTCTCGGAGTTGGGGG
AGTTGATGCTACCGGATGGACGGTGCTTGGGCCGCCGTGAGTATCAACGG
TATTACAAGCAGCGGTATCGTCCCGAGGACGTCCGATCGTCGTTGGTGGC
GTCGAAGCATGAGTCAGCTGGGCGGTTGTGGCCAGGAATGGAGAGCAATG
CGGTTGTGAAGGCGGGAGGGACAGGGAGCTTGATGGTGCGTGGTGGGGCG
GGGGGGGAGGGGTTATGGGGGCCTGATAAGGCGGCGCGGAAGGCGGTGAT
GAAGGTAACGGCGGCGGCACGACGGGTTCATGATAAATACAGGTTACGGA
AGGAGATCAGCACAAATAAGTTCCACAAGCGGCCTCAGATTGACGGCTAG
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Synonyms
Publications