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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:404582..407062 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01340.5 vs.
Match: EWM26763.1 (enoyl- hydratase isomerase [Nannochloropsis gaditana]) HSP 1 Score: 232.3 bits (591), Expect = 2.500e-57 Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 0
Query: 36 SLSSSAASSPSHDPNKEPDAP--PVLVERRSVAGTHGGYLVVTLNRPRHSNAMSTAILHDLQAVFDKLPTDKWVRAVVLTGTGHAFCGGHDLYQMHDSQGDKKYFERMFAKCSRFMLSIQRVPQPVVAAVNGLATGAGK 173
SLSSSA S PS P++EP+A P+LVERR++AGT GGYL+VTLNRPRHSNAM+ A L +LQAVFD+LP DKWVRAVVLTG GHAFCGGHDLYQMHDSQGDK+YFERMFA+CSRFMLSIQRVPQPV+AAVNGLATGAG+
Sbjct: 28 SLSSSAMSPPSSPPSEEPEATTDPILVERRALAGTKGGYLLVTLNRPRHSNAMNNATLQELQAVFDRLPADKWVRAVVLTGAGHAFCGGHDLYQMHDSQGDKQYFERMFARCSRFMLSIQRVPQPVLAAVNGLATGAGR 166
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01340.5 ID=NO08G01340.5|Name=NO08G01340.5|organism=Nannochloropsis oceanica|type=mRNA|length=2327bp CTTTGCCTGATGAAAAACCTGTCAAAGTCGCTAGTAATACTCGGACAAAA ATAAGGGGCGAATAGGCAACAATTTTTTGTTGGAAGGCTCGCCCTCGTGT GCAAGTCCTAGAGGAGGTCAGGTTGCATGCGATAGTTCTAGAGGGATGTA GGAACAGCAGAAAAAAAGAACCAAACGAGGCAAAGTTGTGATTGATTGAT GTGATTGTGATTGTGATTTTGTGATTTTGTGATGTGATCACCTCTGTGAT GTGACGTGATGTGATGTGATGTGATGTGCTCTCATCATTAAATGCGCAAG ATGGTCAGAATGAGTGCTCACAAACCATTTCCTCACGCCTAGACACTTGC GCCCGACCCACCAGCCACTACATACATCATCTACATCATAGTAACAACAA GGACAATAGTTCCCTCTTGCAACCAAGGAGCCACTCCCTGATCGTCTACG CATCTTCAACATATCAGTATATCAGTATCAGTGTAAGTGGAGAGCTAACG TCTCTGACCCCTATCCCCCCCCTTGAAGCATCGAGACATGTTATGTCTAT CCCACGCACGTGCACCCCCAAGAATTCGTAATGGGGTATCGCGTTATATG CTGCGTCGGTTATATGCCAATCACCGCGCCTCCCGTCCCCCTGACACCCC CTACCCTCCCCTTGACTCCCCCGGACACCTTGATGCCCCTCTCCTAGTCC TCCTGTCCTCTGTCCTTCCTGCCTCCCACTCGCGCATCTCCAACAGCCCG ATGCCAGGCATGATTTTCTATCCTGCGTCGGGTATAGAGAGATTGCAACA GAAACTCTCTACATGACTGCTTCTGACCGCCGCAAATGCTTTGCGCCACT ATAAGCTGACGGGGGATTGATGCAGTCACACATTCCCATTCTTACAACGA GGCAGGCACGACTTACTTTGCCTCTATCATCTTTTTTCTGTTCTTGACTG TCATTATCTGCCTCATTTATGATCACGATGTACAACACCATATAGGTATT AATACTCCCTTCTTTTTTTCAACTTCAATCCAGTCCTCATCCTCGCTCCT CTCCACCCCTCCATCTCTCCAAAGTAGAGCTTTGTACAATTACAAATTAG CACCATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAA TTAGCGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGC TTTTCTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCC AAACAAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCG CTGGTACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCAC TCCAACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCTGTTTTCGA CAAACTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAG GACACGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAG GGCGACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCAT GCTGTCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGC TAGCCACAGGCGCTGGTAAGTCTCGGCGTGTGTCTTCGTTTCATTTGTTT AGTAAAATATTGCAGGTATTTGACTGTCACCTACCATATAATCACTTCGT ATCTCACCTCTTGAAACGTCTGTCCTTTTCTCACTCCCTCCCAACCATGC CTCCCTCCCCTCCACCAGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCC GTGGCCTCCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTT GTTCTGCGCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAAC GGGCGTTTGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCG CTGGATTGGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGC CGAGGTCTTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGA TTGCAATGGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATT GCGGGGGCATACGACATGGCCGATTATGTAATGAGCGCGAACATGACCGA GGCTGACACAGAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCGCCGG CGTGGGATTTGTAGAAGTTGAGAAGCGTGGTAAAATGACGGCTATGTTTT GTGGTAGATCATCGATCGTGTGTGTGCCTGTATACAGGATGTACAAGGGG GAGGAGGTTATAGTTTGTAGGGGGGGG back to topprotein sequence of NO08G01340.5 >NO08G01340.5-protein ID=NO08G01340.5-protein|Name=NO08G01340.5|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp MLLMPRIFRTAASSTISVIHRPTTPLLPLLPRFSLSLSSSAASSPSHDPN KEPDAPPVLVERRSVAGTHGGYLVVTLNRPRHSNAMSTAILHDLQAVFDK LPTDKWVRAVVLTGTGHAFCGGHDLYQMHDSQGDKKYFERMFAKCSRFML SIQRVPQPVVAAVNGLATGAGKSRRVSSFHLFSKILQVFDCHLPYNHFVS HLLKRLSFSHSLPTMPPSPPPGCQLVAACDLAVASSRAEFGTSGVKLGLF CATPSVPLSRNLSRKRAFEMLVTGEYINADKALDWGLVNKVCDHEKLDAE VLRLVTEIVKNPAVAIAMGKRLFYSQLEKSSIAGAYDMADYVMSANMTEA DTEEGIAAFVEKRPPAWDL* back to topmRNA from alignment at chr8:404582..407062- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01340.5 ID=NO08G01340.5|Name=NO08G01340.5|organism=Nannochloropsis oceanica|type=mRNA|length=2481bp|location=Sequence derived from alignment at chr8:404582..407062- (Nannochloropsis oceanica) CTTTGCCTGATGAAAAACCTGTCAAAGTCGCTAGTAATACTCGGACAAAA
ATAAGGGGCGAATAGGCAACAATTTTTTGTTGGAAGGCTCGCCCTCGTGT
GCAAGTCCTAGAGGAGGTCAGGTTGCATGCGATAGTTCTAGAGGGATGTA
GGAACAGCAGAAAAAAAGAACCAAACGAGGCAAAGTTGTGATTGATTGAT
GTGATTGTGATTGTGATTTTGTGATTTTGTGATGTGATCACCTCTGTGAT
GTGACGTGATGTGATGTGATGTGATGTGCTCTCATCATTAAATGCGCAAG
ATGGTCAGAATGAGTGCTCACAAACCATTTCCTCACGCCTAGACACTTGC
GCCCGACCCACCAGCCACTACATACATCATCTACATCATAGTAACAACAA
GGACAATAGTTCCCTCTTGCAACCAAGGAGCCACTCCCTGATCGTCTACG
CATCTTCAACATATCAGTATATCAGTATCAGTGTAAGTGGAGAGCTAACG
TCTCTGACCCCTATCCCCCCCCTTGAAGCATCGAGACATGTTATGTCTAT
CCCACGCACGTGCACCCCCAAGAATTCGTAATGGGGTATCGCGTTATATG
CTGCGTCGGTTATATGCCAATCACCGCGCCTCCCGTCCCCCTGACACCCC
CTACCCTCCCCTTGACTCCCCCGGACACCTTGATGCCCCTCTCCTAGTCC
TCCTGTCCTCTGTCCTTCCTGCCTCCCACTCGCGCATCTCCAACAGCCCG
ATGCCAGGCATGATTTTCTATCCTGCGTCGGGTATAGAGAGATTGCAACA
GAAACTCTCTACATGACTGCTTCTGACCGCCGCAAATGCTTTGCGCCACT
ATAAGCTGACGGGGGATTGATGCAGTCACACATTCCCATTCTTACAACGA
GGCAGGCACGACTTACTTTGCCTCTATCATCTTTTTTCTGTTCTTGACTG
TCATTATCTGCCTCATTTATGATCACGATGTACAACACCATATAGGTATT
AATACTCCCTTCTTTTTTTCAACTTCAATCCAGTCCTCATCCTCGCTCCT
CTCCACCCCTCCATCTCTCCAAAGTAGAGCTTTGTACAATTACAAATTAG
CACCATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAA
TTAGCGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGC
TTTTCTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCC
AAACAAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCG
CTGGTACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCAC
TCCAACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCTGTTTTCGA
CAAACTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAG
GACACGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAG
GGCGACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCAT
GCTGTCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGC
TAGCCACAGGCGCTGGTAAGTCTCGGCGTGTGTCTTCGTTTCATTTGTTT
AGTAAAATATTGCAGGTATTTGACTGTCACCTACCATATAATCACTTCGT
ATCTCACCTCTTGAAACGTCTGTCCTTTTCTCACTCCCTCCCAACCATGC
CTCCCTCCCCTCCACCAGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCC
GTGGCCTCCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTT
GTTCTGCGCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAAC
GGGCGTTTGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCG
CTGGATTGGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGC
CGAGGTCTTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGA
TTGCAATGGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATT
GCGGGGGCATGTAAGCACTTGCTTGAAGGGAGGCAGAGGGTGGCTGAGAG
GACGGGAAGAGGGATAGAAGACAGGAAGATGCTGCCAAGCTTGTCTGTGC
TCTCATTTTTATATGTTCATTTTCCTTTTGCTCCTCTTCCTTCCACCCGA
CACTTAATTCCCAGACGACATGGCCGATTATGTAATGAGCGCGAACATGA
CCGAGGCTGACACAGAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCG
CCGGCGTGGGATTTGTAGAAGTTGAGAAGCGTGGTAAAATGACGGCTATG
TTTTGTGGTAGATCATCGATCGTGTGTGTGCCTGTATACAGGATGTACAA
GGGGGAGGAGGTTATAGTTTGTAGGGGGGGG back to topCoding sequence (CDS) from alignment at chr8:404582..407062- >NO08G01340.5 ID=NO08G01340.5|Name=NO08G01340.5|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr8:404582..407062- (Nannochloropsis oceanica) ATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAATTAG CGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGCTTTT CTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCCAAAC AAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCGCTGG TACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCACTCCA ACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCTGTTTTCGACAAA CTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAGGACA CGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAGGGCG ACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCATGCTG TCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGCTAGC CACAGGCGCTGGTAAGTCTCGGCGTGTGTCTTCGTTTCATTTGTTTAGTA AAATATTGCAGGTATTTGACTGTCACCTACCATATAATCACTTCGTATCT CACCTCTTGAAACGTCTGTCCTTTTCTCACTCCCTCCCAACCATGCCTCC CTCCCCTCCACCAGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCCGTGG CCTCCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTTGTTC TGCGCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAACGGGC GTTTGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCGCTGG ATTGGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGCCGAG GTCTTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGATTGC AATGGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATTGCGG GGGCATACGACATGGCCGATTATGTAATGAGCGCGAACATGACCGAGGCT GACACAGAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCGCCGGCGTG GGATTTGTAG back to top
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