NO08G01170.1, NO08G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01170.1
Unique NameNO08G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1578
Alignment locationchr8:364970..367005 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:364970..367005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01170.1 vs.
Match: EWM26767.1 (Nitrogen permease regulator 2 [Nannochloropsis gaditana])

HSP 1 Score: 538.1 bits (1385), Expect = 3.000e-149
Identity = 305/521 (58.54%), Postives = 361/521 (69.29%), Query Frame = 0 
Query:   14 AQASGQAATLLAIIYSEFDNTLGPTIRCQVPEGFLSQGFFDSISDYVITGRQLYGRTVAVTACDLQVVGFPLCIENEKYSRNTFLFNVSFVLRADADPTPYEPILRKLALTLHTLEVESEFIFRPEKKAHLHDMLHKILTDLNAREECLLALDDANVLSLKLTRVVQEPPLVGDHDVPVFLRDAAVLKSLDWDLALRQIISHIDGVKYTKRLAMDAEMDVDCAKAALRTLAYYDFIALVDIFQFSNIYITSTTEAAAFRAFAKSPALLMECQGFVCNHAAAVTA------TLSSIGAATPDTSDGGVVGEEG-RNGEPGRGE--GGGPGRGEEAEGSTACRLLPSGEDLLQLYGACRPNLTLAEVLQTHKEKMSRIDARRFVTFGVVYGFLRRVHRYPVYIRKWNKGTEELSSSKSSISAGLITMPPNRPSSLPRARGAPQQHHHHQHHHHQQQRQEEKQQQQQQFSRPGFHPHSLVDQVKVLLDGTRTMDEVCVAFMRPFQELEEIVLSAGDGEVLIVYK 526
            A+    A  LLAIIYS+FDNT+GPTIRCQ P+GFLSQ  FDSISDYVITGRQLYG+T+AVT  DLQ+VGFPLCIENEKY RNTFLFNVSFVL A +DP PYEPILRK+ALTL++LE + EFI RPE +  LH MLH+IL DLNAR+ECLL LDDAN+LSLKL  VVQEPP+VGDH VPVFLRDAAVLK+LDWDLALR II HIDG+KY KRLAMDAEMDVDC KAALRTL +YDFIALVDIF+FSN+Y+ S TEAAAFR F  SPA+L EC+ FVC   A  ++      T +S  A T   +D   +  +       G GE   GG   GEE E S    LL S EDL+ LY A  P+LTLA+++   K+KM  +DARR VTFGVVYGFLRRVHRYPVY+      ++E +     I  G  T          +  G                +    +  + +      +P SLV QV+ + DGTRT+DE CV FMRPFQEL++I LS+  GEV+I+YK
Sbjct:    9 AEKEDAAGPLLAIIYSDFDNTIGPTIRCQTPDGFLSQEVFDSISDYVITGRQLYGKTIAVTVSDLQIVGFPLCIENEKYPRNTFLFNVSFVLDARSDPAPYEPILRKVALTLYSLEEDREFISRPETRWQLHRMLHRILEDLNARKECLLILDDANLLSLKLVHVVQEPPVVGDHQVPVFLRDAAVLKNLDWDLALRHIIPHIDGIKYAKRLAMDAEMDVDCVKAALRTLVHYDFIALVDIFKFSNVYVISGTEAAAFREFMDSPAMLEECRKFVCYPPACTSSQALPPHTPTSTPATTGHCTDSPTIASQSVMEDRMGAGERMTGGARPGEEDEASP---LLTSDEDLINLYRAFGPHLTLADIISARKQKMRAVDARRLVTFGVVYGFLRRVHRYPVYL----PASKESNQPPGPIRNGQRTQDGTLGRGGGKKYGTKLTSQRSSISKEDAGKTVNNKSNEHKQRSTQKYPLSLVKQVQSVFDGTRTLDEACVKFMRPFQELKDIALSSEGGEVVILYK 522
The following BLAST results are available for this feature:
BLAST of NO08G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26767.13.000e-14958.54Nitrogen permease regulator 2 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01170NO08G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01170.1NO08G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01170.1.cds1NO08G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01170.1.cds2NO08G01170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01170.1.cds3NO08G01170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01170.1.cds4NO08G01170.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01170.1.cds5NO08G01170.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01170.1 ID=NO08G01170.1|Name=NO08G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp
ATGAACGAGAGAGGTAGTCATAGTCAAGCAGCAAACGCAGCACAAGCATC
AGGCCAAGCAGCGACGCTACTGGCAATCATCTACAGCGAGTTCGATAATA
CGCTAGGGCCTACGATACGATGCCAGGTGCCCGAGGGCTTCTTGTCCCAA
GGCTTTTTTGACAGCATTTCCGACTACGTCATCACGGGACGGCAGCTCTA
TGGACGCACAGTTGCTGTGACGGCTTGCGACCTCCAAGTGGTGGGCTTCC
CCTTATGCATCGAGAATGAAAAGTACTCCCGCAATACGTTTCTTTTTAAC
GTTAGCTTTGTCCTGCGCGCAGATGCGGACCCCACCCCGTACGAGCCTAT
TCTTCGGAAGCTTGCCCTTACCCTCCATACCTTGGAGGTAGAGAGCGAGT
TCATCTTCCGCCCAGAAAAAAAAGCACACCTTCACGACATGCTTCACAAG
ATTTTGACAGATTTAAATGCGCGTGAGGAGTGTCTGTTAGCCTTGGATGA
CGCGAACGTATTGAGTTTAAAGCTGACGAGGGTGGTGCAGGAACCCCCTC
TGGTCGGAGACCACGACGTGCCTGTCTTCCTCCGCGATGCCGCCGTGCTC
AAAAGTTTAGATTGGGACCTCGCTCTACGGCAAATCATTTCTCACATTGA
TGGAGTCAAGTACACCAAAAGGCTGGCGATGGACGCTGAGATGGACGTGG
ACTGCGCTAAAGCCGCCTTGCGCACCTTGGCCTACTATGACTTCATCGCC
TTGGTGGATATATTCCAATTTTCAAACATCTACATTACAAGCACAACAGA
AGCGGCGGCTTTCCGCGCTTTTGCCAAGAGCCCGGCGTTGCTGATGGAAT
GTCAGGGCTTCGTGTGTAACCATGCTGCTGCGGTCACTGCTACTCTTTCT
AGCATTGGTGCTGCTACTCCCGACACTTCTGATGGAGGGGTAGTGGGGGA
GGAAGGGAGAAATGGAGAACCAGGGAGAGGAGAAGGAGGGGGTCCAGGAC
GAGGAGAAGAGGCCGAAGGAAGCACAGCTTGCCGGCTGCTACCCAGCGGA
GAGGATCTGTTACAATTGTACGGTGCTTGTCGACCCAACCTGACACTTGC
AGAGGTACTGCAAACACATAAAGAGAAAATGAGTCGGATTGATGCTCGCC
GCTTCGTGACGTTTGGCGTGGTGTATGGCTTCTTGCGTAGGGTGCATCGA
TACCCGGTGTATATACGGAAATGGAACAAGGGGACTGAAGAATTGAGCAG
CAGTAAGAGTAGCATTTCTGCGGGCTTGATAACAATGCCGCCGAATCGGC
CCTCATCGCTGCCGCGGGCACGAGGAGCACCTCAGCAGCATCACCACCAC
CAGCATCACCACCACCAGCAACAGCGACAGGAAGAGAAACAGCAGCAGCA
GCAGCAGTTTTCTCGGCCGGGCTTTCACCCACATTCTCTAGTGGATCAAG
TAAAGGTCTTGTTGGACGGGACACGGACTATGGACGAGGTATGCGTGGCG
TTTATGCGGCCCTTTCAGGAGCTTGAAGAAATTGTTCTCTCCGCAGGGGA
TGGGGAGGTTTTGATAGTGTATAAATAG
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protein sequence of NO08G01170.1

>NO08G01170.1-protein ID=NO08G01170.1-protein|Name=NO08G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MNERGSHSQAANAAQASGQAATLLAIIYSEFDNTLGPTIRCQVPEGFLSQ
GFFDSISDYVITGRQLYGRTVAVTACDLQVVGFPLCIENEKYSRNTFLFN
VSFVLRADADPTPYEPILRKLALTLHTLEVESEFIFRPEKKAHLHDMLHK
ILTDLNAREECLLALDDANVLSLKLTRVVQEPPLVGDHDVPVFLRDAAVL
KSLDWDLALRQIISHIDGVKYTKRLAMDAEMDVDCAKAALRTLAYYDFIA
LVDIFQFSNIYITSTTEAAAFRAFAKSPALLMECQGFVCNHAAAVTATLS
SIGAATPDTSDGGVVGEEGRNGEPGRGEGGGPGRGEEAEGSTACRLLPSG
EDLLQLYGACRPNLTLAEVLQTHKEKMSRIDARRFVTFGVVYGFLRRVHR
YPVYIRKWNKGTEELSSSKSSISAGLITMPPNRPSSLPRARGAPQQHHHH
QHHHHQQQRQEEKQQQQQQFSRPGFHPHSLVDQVKVLLDGTRTMDEVCVA
FMRPFQELEEIVLSAGDGEVLIVYK*
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mRNA from alignment at chr8:364970..367005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01170.1 ID=NO08G01170.1|Name=NO08G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp|location=Sequence derived from alignment at chr8:364970..367005- (Nannochloropsis oceanica)
ATGAACGAGAGAGGTAGTCATAGTCAAGCAGCAAACGCAGCACAAGCATC
AGGCCAAGCAGCGACGCTACTGGCAATCATCTACAGCGAGTTCGATAATA
CGCTAGGGCCTACGATACGATGCCAGGTGCCCGAGGGGTGCGTATGCTTG
GTCTGTGTGTCATTGCGTCTTCTTGGTATCCCTCCCACCTCGCCTTCTCC
ATCACGCTTTCCATCCCAACCGCACGCCTACATACAGCTTCTTGTCCCAA
GGCTTTTTTGACAGCATTTCCGACTACGTCATCACGGGACGGCAGCTCTA
TGGACGCACAGTTGCTGTGACGGCTTGCGACCTCCAAGTGGTGGGCTTCC
CCTTATGCATCGAGAATGAAAAGGTCCGTCCCTTCGTGAAACGTCACCTC
TCTCCTGCCCTCTCTACATTTCCTCTCACGCACCCATTTCCTCCTGTATT
TACCCAACGAAACAGTACTCCCGCAATACGTTTCTTTTTAACGTTAGCTT
TGTCCTGCGCGCAGATGCGGACCCCACCCCGTACGAGCCTATTCTTCGGA
AGCTTGCCCTTACCCTCCATACCTTGGAGGTAGAGAGCGAGTTCATCTTC
CGCCCAGAAAAAAAAGCACACCTTCACGACATGCTTCACAAGATTTTGAC
AGATTTAAATGCGCGTGAGGAGTGTCTGTTAGCCTTGGATGACGCGAACG
TATTGAGTTTAAAGCTGACGAGGGTGGTGCAGGTAGAGAGGGAGGGAACA
CGCATATCGGGCGAACCCCTTCTCTTAAAACGCCCATGTATCGCATGATA
CTTTAGAATGTATTCACAGCAGCAATTTTTACACTGACTCATTCGCTCAT
CGCGTATTCCCGTTCCATCACTTCCCTCCACTCTTTCCCAAGGAACCCCC
TCTGGTCGGAGACCACGACGTGCCTGTCTTCCTCCGCGATGCCGCCGTGC
TCAAAAGTTTAGATTGGGACCTCGCTCTACGGCAAATCATTTCTCACATT
GATGGAGTCAAGTACACCAAAAGGCTGGCGATGGACGCTGAGGTACGGGA
ACGGGAGGGGGAGGAAGCGAGGAGGGAGGAGATGTGAAAGAGGACTGGGT
GTCCTTATCTTCCTCCCTCCCTCTCTCTTCCTCCCTCCTTTTCTTCAGAT
GGACGTGGACTGCGCTAAAGCCGCCTTGCGCACCTTGGCCTACTATGACT
TCATCGCCTTGGTGGATATATTCCAATTTTCAAACATCTACATTACAAGC
ACAACAGAAGCGGCGGCTTTCCGCGCTTTTGCCAAGAGCCCGGCGTTGCT
GATGGAATGTCAGGGCTTCGTGTGTAACCATGCTGCTGCGGTCACTGCTA
CTCTTTCTAGCATTGGTGCTGCTACTCCCGACACTTCTGATGGAGGGGTA
GTGGGGGAGGAAGGGAGAAATGGAGAACCAGGGAGAGGAGAAGGAGGGGG
TCCAGGACGAGGAGAAGAGGCCGAAGGAAGCACAGCTTGCCGGCTGCTAC
CCAGCGGAGAGGATCTGTTACAATTGTACGGTGCTTGTCGACCCAACCTG
ACACTTGCAGAGGTACTGCAAACACATAAAGAGAAAATGAGTCGGATTGA
TGCTCGCCGCTTCGTGACGTTTGGCGTGGTGTATGGCTTCTTGCGTAGGG
TGCATCGATACCCGGTGTATATACGGAAATGGAACAAGGGGACTGAAGAA
TTGAGCAGCAGTAAGAGTAGCATTTCTGCGGGCTTGATAACAATGCCGCC
GAATCGGCCCTCATCGCTGCCGCGGGCACGAGGAGCACCTCAGCAGCATC
ACCACCACCAGCATCACCACCACCAGCAACAGCGACAGGAAGAGAAACAG
CAGCAGCAGCAGCAGTTTTCTCGGCCGGGCTTTCACCCACATTCTCTAGT
GGATCAAGTAAAGGTCTTGTTGGACGGGACACGGACTATGGACGAGGTAT
GCGTGGCGTTTATGCGGCCCTTTCAGGAGCTTGAAGAAATTGTTCTCTCC
GCAGGGGATGGGGAGGTTTTGATAGTGTATAAATAG
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Coding sequence (CDS) from alignment at chr8:364970..367005-

>NO08G01170.1 ID=NO08G01170.1|Name=NO08G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at chr8:364970..367005- (Nannochloropsis oceanica)
ATGAACGAGAGAGGTAGTCATAGTCAAGCAGCAAACGCAGCACAAGCATC
AGGCCAAGCAGCGACGCTACTGGCAATCATCTACAGCGAGTTCGATAATA
CGCTAGGGCCTACGATACGATGCCAGGTGCCCGAGGGCTTCTTGTCCCAA
GGCTTTTTTGACAGCATTTCCGACTACGTCATCACGGGACGGCAGCTCTA
TGGACGCACAGTTGCTGTGACGGCTTGCGACCTCCAAGTGGTGGGCTTCC
CCTTATGCATCGAGAATGAAAAGTACTCCCGCAATACGTTTCTTTTTAAC
GTTAGCTTTGTCCTGCGCGCAGATGCGGACCCCACCCCGTACGAGCCTAT
TCTTCGGAAGCTTGCCCTTACCCTCCATACCTTGGAGGTAGAGAGCGAGT
TCATCTTCCGCCCAGAAAAAAAAGCACACCTTCACGACATGCTTCACAAG
ATTTTGACAGATTTAAATGCGCGTGAGGAGTGTCTGTTAGCCTTGGATGA
CGCGAACGTATTGAGTTTAAAGCTGACGAGGGTGGTGCAGGAACCCCCTC
TGGTCGGAGACCACGACGTGCCTGTCTTCCTCCGCGATGCCGCCGTGCTC
AAAAGTTTAGATTGGGACCTCGCTCTACGGCAAATCATTTCTCACATTGA
TGGAGTCAAGTACACCAAAAGGCTGGCGATGGACGCTGAGATGGACGTGG
ACTGCGCTAAAGCCGCCTTGCGCACCTTGGCCTACTATGACTTCATCGCC
TTGGTGGATATATTCCAATTTTCAAACATCTACATTACAAGCACAACAGA
AGCGGCGGCTTTCCGCGCTTTTGCCAAGAGCCCGGCGTTGCTGATGGAAT
GTCAGGGCTTCGTGTGTAACCATGCTGCTGCGGTCACTGCTACTCTTTCT
AGCATTGGTGCTGCTACTCCCGACACTTCTGATGGAGGGGTAGTGGGGGA
GGAAGGGAGAAATGGAGAACCAGGGAGAGGAGAAGGAGGGGGTCCAGGAC
GAGGAGAAGAGGCCGAAGGAAGCACAGCTTGCCGGCTGCTACCCAGCGGA
GAGGATCTGTTACAATTGTACGGTGCTTGTCGACCCAACCTGACACTTGC
AGAGGTACTGCAAACACATAAAGAGAAAATGAGTCGGATTGATGCTCGCC
GCTTCGTGACGTTTGGCGTGGTGTATGGCTTCTTGCGTAGGGTGCATCGA
TACCCGGTGTATATACGGAAATGGAACAAGGGGACTGAAGAATTGAGCAG
CAGTAAGAGTAGCATTTCTGCGGGCTTGATAACAATGCCGCCGAATCGGC
CCTCATCGCTGCCGCGGGCACGAGGAGCACCTCAGCAGCATCACCACCAC
CAGCATCACCACCACCAGCAACAGCGACAGGAAGAGAAACAGCAGCAGCA
GCAGCAGTTTTCTCGGCCGGGCTTTCACCCACATTCTCTAGTGGATCAAG
TAAAGGTCTTGTTGGACGGGACACGGACTATGGACGAGGTATGCGTGGCG
TTTATGCGGCCCTTTCAGGAGCTTGAAGAAATTGTTCTCTCCGCAGGGGA
TGGGGAGGTTTTGATAGTGTATAAATAG
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Synonyms
Publications