NO07G03090.2, NO07G03090.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03090.2
Unique NameNO07G03090.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2932
Alignment locationchr7:861644..864667 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:861644..864667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03090.2 vs.
Match: XP_005852499.1 (light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526]; EKU23332.1 light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 281.2 bits (718), Expect = 4.700e-72
Identity = 156/300 (52.00%), Postives = 200/300 (66.67%), Query Frame = 0 
Query:   64 SMEKFAKWADKGTGINPFLPPRSTTSSTAAKAGGLVLSLGLLAVRLPLLCITGSWLFLVSLLTTPWFDILTGSLLLAACYVNHAPNLHTGGSPTPEQTSITLLALGVSLGLLPPLHRLFSLLLLRPALAAVLKTMGISFIEQHANLRKLGLRPPGHKPLVTRVGATIQPGDLLLSNHTSALDILYFASRSLPLFSCFTLAPEIRFSSLSAFGAVWKAGKVPNKA---GQGVTLDKVLAEAKRERRSLVVFPEMVRSNGEGILAFPKGVLDGL----AGAGEGGGGAAGGSVGVHLFGFRC 357
            SMEKF KWADKGTGINPFLP R   SS  +K    +L++ L+AVRLPL+ +T +W   +SLLT PWFDILTG+L     Y++  P+     + +P+ T   LL LG    L  P+ R+FS L LRP +  +L  +G+S+ EQHANLRKLGLRPPGH+P  +R+G TIQ GD+LLSNHTS L++L+F SR LP FS   +AP  +   L+   A W+AG VP KA   G G  L  + AEAKR+ +++VVFPE  RSNG+G+L F +GVLDG     A  G+  GG  GG V VH+FGFRC
Sbjct:   34 SMEKFTKWADKGTGINPFLPQRRAASSLPSKVASGLLAIVLIAVRLPLILLTLTWFLALSLLTKPWFDILTGALFTTYAYLDEGPSKPM--TLSPQHTGFFLLVLGSLTALSVPIRRVFSFLTLRPPVYLLLSILGVSYREQHANLRKLGLRPPGHRPHDSRIGRTIQAGDILLSNHTSPLEVLFFISRFLPAFSALAVAPVAQGRLLTPLQAWWRAGLVPPKAFETGTGQALSSLAAEAKRQGQAVVVFPETARSNGDGVLVFQRGVLDGTDAKEAKGGKLTGGERGGGVNVHIFGFRC 331
The following BLAST results are available for this feature:
BLAST of NO07G03090.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852499.14.700e-7252.00light harvesting complex protein, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03090NO07G03090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03090.2NO07G03090.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03090.2.cds1NO07G03090.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03090.2.cds2NO07G03090.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03090.2 ID=NO07G03090.2|Name=NO07G03090.2|organism=Nannochloropsis oceanica|type=mRNA|length=2932bp
TTCATTTGTTGCATTCTTTTCATTCATTCATCCCATTTATTTAATTTATT
TCCCTCGTGGGGGCGTTATCCACAACACCACATGGTTACACGCACTCGCC
ACCTGCTCGTAGACCGGGTTACACTTCACCTGCCTCACAGGGCCTGTATG
CCCACTCAATCGACACACCACCCCGTCCATTACCCTCTCCTCCGTCGCAT
CAAACACACATACCTCCCCCTCCTCCGAGCCCGTCAAAATGTGGTTCACA
TCCGAGGTATAACAAGCTGTGATATTCAATCCCTTCTCATTCTTATAGCC
GGTCAGAAACCTCGTCACTTGCAAATCGTAAGTGTCAATCACAAGCGTCA
TCCCTCCCTTGGTCGACACCAGTAAATTCTTCCCGTCCGCGCTAAAGCTC
ATGTCAATCCACGGAGCCTGTACCAACTTACGAGCCACCTCAGGGTCAAT
CGTTGGTTGTTGTGCAAGCAACGTCTGTCGTAACTCATTCTCAGAGATCC
CGAAATTTTCAAAAGCCCCTTCACTGAACTTCCTCGCGTCATACAATTTC
AACAAATGTCTGTCTTGCACCTGCGCGCACACTGCAAAAACCAACCCCGA
CGGGTCAAACTCCGCTAAAACAGGACAAGGACTACTGCTGCTGTTGCTGT
AGCTTCCCCCACCACCTATCTGAATGTTGCCCTGGCCCAAGCACTTGGGT
TGCTGCAATGTCCATATCCGAACGGTACCATCAACCGATGCGCTCATAAA
TCGATCGTCTGTGTAAGACATGGCCAACGCTGTCACTCGCGCTTCATGGC
CCGAAAAAAAACGCAAGTACTGGTTGTCGTACAGGGACAGATAACGAATG
TCATGCGCCGTCGTTCCCAAGGCGGATGCTGTCTGGCTTGCCGAGGGCCG
GCTACTGCACAAAACACTCTGGGCATGATGCGTGAACCTGGCCAGCTCCA
CCCCATACTTCTTGCAAAATAGTTTCTTCCGCGCTTTGCCCTCCAAGGCA
TTTATCAGGTGCACGGTTCCGTCCTCCGCCGCGGTCACTAAATACTCACC
TTCCCGATGATAATCCAAGCAAGTGACTGGAGCCGTCCCCGAAACCACGC
AGCCACGTTGCAGCTCCTGCACCCGGACGGCTTCCAGGCCACTCATCCCG
CTACTTCCGCACGTCATCGTCAATTTCCAACTGCGTAGGTGTGTGAGGTG
GTATACGTGTGGTTTAGAATGGCCAAATTGCTGTGTGGAAGAAGTAAGGC
TTTCATCATCAAAGCGGCATTCTTCATCTGCCACTTTGTACTTCGGCACA
TCCACCACTCACAGCCCTTCCATCCAATTCACACCCCAGCACCAAAGGTA
AAACGACAAGGAAGCTTATCGGCCCGCTCGCCAGCTTGCCGCAGCCCTAG
CTTCCAGTCAATGGAGAAATTCGCCAAGTGGGCCGATAAAGGTACGGGTA
TCAACCCTTTTTTGCCACCACGCTCCACCACCTCCTCCACGGCAGCCAAG
GCAGGGGGCCTGGTTCTCAGTCTCGGCCTGCTCGCCGTGCGCCTGCCCCT
CCTCTGTATCACAGGCAGCTGGCTCTTCCTCGTCAGTCTTCTCACCACCC
CTTGGTTCGACATTTTGACTGGCAGTCTCCTTCTTGCCGCCTGCTATGTC
AATCACGCACCAAACCTACACACCGGAGGCTCTCCCACTCCCGAGCAAAC
AAGCATCACTCTCCTAGCCCTAGGAGTAAGCCTGGGCCTCCTCCCCCCCC
TCCATCGTCTTTTCTCCCTCCTCCTCCTCCGCCCAGCCCTTGCCGCTGTC
CTCAAAACTATGGGCATATCCTTTATTGAACAACATGCGAATTTACGGAA
GCTCGGTTTGAGGCCACCAGGGCACAAGCCTCTAGTTACACGCGTGGGTG
CGACCATTCAACCCGGGGACCTCCTCCTGAGCAATCACACCTCTGCCTTG
GACATCCTTTATTTTGCCAGTCGTTCCTTACCGTTGTTTTCATGTTTCAC
GCTTGCCCCCGAGATAAGATTTAGCTCCCTGTCGGCTTTCGGAGCGGTGT
GGAAGGCAGGCAAAGTACCTAATAAAGCAGGCCAAGGAGTGACTTTGGAC
AAGGTCTTAGCAGAAGCCAAGAGGGAGAGAAGGTCATTGGTAGTGTTTCC
GGAGATGGTACGATCGAATGGGGAAGGAATATTGGCCTTTCCCAAGGGAG
TGTTGGACGGTTTAGCGGGGGCAGGGGAGGGAGGGGGAGGAGCAGCAGGA
GGAAGCGTAGGAGTGCATTTGTTTGGGTTTAGGTGCGTTGTGGGAGAGGA
GGGGGAATACGGGAGGGAGAGAAGATGAAAGCAAGCTTGGAATACACCGT
GATGCAGCTGCGGGGGTCAAGCATATTATGCACTCCCGTAAACATTCTCT
TCGACGGAAAGGGTCATAGAAAGCGATGCCAGTGGCGCCTGAGGAGGGTG
GGTTGGGAGACGTTGCCTTAATGCTGCCTATGGATGTCATGTCTTGAACA
TGGATTCCACTACGTTCTTCCTATCTTTCTTCTCTCATACACATGCATAT
GTCTTCCCACACGACAGTGCCGTCAAAGGCGACCTTCTTGCCACGCATAC
CGTTGGTAGCAGCTTGCGTTTCTTTTTCAGGATCCTCTGCCGACCGCGAA
CCACCGTCCACGTCACTTACGTCTGCGCGCGAGACGTGCCTTCTTATCCC
GGAAGCCGCTGCAGCAGTGGGAATAAAAGCACCAGCAGCACACCAGCGCA
ATGGAGTGAGGAAATTAGAGGCCTTCTGGCCGGTATGTTGGGACGACCTA
AGCTTGGGTTGGGGTACGATGATTTCGTAACCTTTGGTAAATATTATGCG
GCAGTTCAGATTAAAGATGATAAAGCAGCAGCGGCGTTGGCGAGTGCGAG
GGAGAAGCTGTAGCGATGAGGAAGGGAGGGGG
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protein sequence of NO07G03090.2

>NO07G03090.2-protein ID=NO07G03090.2-protein|Name=NO07G03090.2|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MAKLLCGRSKAFIIKAAFFICHFVLRHIHHSQPFHPIHTPAPKVKRQGSL
SARSPACRSPSFQSMEKFAKWADKGTGINPFLPPRSTTSSTAAKAGGLVL
SLGLLAVRLPLLCITGSWLFLVSLLTTPWFDILTGSLLLAACYVNHAPNL
HTGGSPTPEQTSITLLALGVSLGLLPPLHRLFSLLLLRPALAAVLKTMGI
SFIEQHANLRKLGLRPPGHKPLVTRVGATIQPGDLLLSNHTSALDILYFA
SRSLPLFSCFTLAPEIRFSSLSAFGAVWKAGKVPNKAGQGVTLDKVLAEA
KRERRSLVVFPEMVRSNGEGILAFPKGVLDGLAGAGEGGGGAAGGSVGVH
LFGFRCVVGEEGEYGRERR*
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mRNA from alignment at chr7:861644..864667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03090.2 ID=NO07G03090.2|Name=NO07G03090.2|organism=Nannochloropsis oceanica|type=mRNA|length=3024bp|location=Sequence derived from alignment at chr7:861644..864667- (Nannochloropsis oceanica)
TTCATTTGTTGCATTCTTTTCATTCATTCATCCCATTTATTTAATTTATT
TCCCTCGTGGGGGCGTTATCCACAACACCACATGGTTACACGCACTCGCC
ACCTGCTCGTAGACCGGGTTACACTTCACCTGCCTCACAGGGCCTGTATG
CCCACTCAATCGACACACCACCCCGTCCATTACCCTCTCCTCCGTCGCAT
CAAACACACATACCTCCCCCTCCTCCGAGCCCGTCAAAATGTGGTTCACA
TCCGAGGTATAACAAGCTGTGATATTCAATCCCTTCTCATTCTTATAGCC
GGTCAGAAACCTCGTCACTTGCAAATCGTAAGTGTCAATCACAAGCGTCA
TCCCTCCCTTGGTCGACACCAGTAAATTCTTCCCGTCCGCGCTAAAGCTC
ATGTCAATCCACGGAGCCTGTACCAACTTACGAGCCACCTCAGGGTCAAT
CGTTGGTTGTTGTGCAAGCAACGTCTGTCGTAACTCATTCTCAGAGATCC
CGAAATTTTCAAAAGCCCCTTCACTGAACTTCCTCGCGTCATACAATTTC
AACAAATGTCTGTCTTGCACCTGCGCGCACACTGCAAAAACCAACCCCGA
CGGGTCAAACTCCGCTAAAACAGGACAAGGACTACTGCTGCTGTTGCTGT
AGCTTCCCCCACCACCTATCTGAATGTTGCCCTGGCCCAAGCACTTGGGT
TGCTGCAATGTCCATATCCGAACGGTACCATCAACCGATGCGCTCATAAA
TCGATCGTCTGTGTAAGACATGGCCAACGCTGTCACTCGCGCTTCATGGC
CCGAAAAAAAACGCAAGTACTGGTTGTCGTACAGGGACAGATAACGAATG
TCATGCGCCGTCGTTCCCAAGGCGGATGCTGTCTGGCTTGCCGAGGGCCG
GCTACTGCACAAAACACTCTGGGCATGATGCGTGAACCTGGCCAGCTCCA
CCCCATACTTCTTGCAAAATAGTTTCTTCCGCGCTTTGCCCTCCAAGGCA
TTTATCAGGTGCACGGTTCCGTCCTCCGCCGCGGTCACTAAATACTCACC
TTCCCGATGATAATCCAAGCAAGTGACTGGAGCCGTCCCCGAAACCACGC
AGCCACGTTGCAGCTCCTGCACCCGGACGGCTTCCAGGCCACTCATCCCG
CTACTTCCGCACGTCATCGTCAATTTCCAACTGCGTAGGTGTGTGAGGTG
GTATACGTGTGGTTTAGAATGGCCAAATTGCTGTGTGGAAGAAGTAAGGC
TTTCATCATCAAAGCGGCATTCTTCATCTGCCACTTTGTACTTCGGCACA
TCCACCACTCACAGCCCTTCCATCCAATTCACACCCCAGCACCAAAGGTA
AAACGACAAGGAAGCTTATCGGCCCGCTCGCCAGCTTGCCGCAGCCCTAG
CTTCCAGTCAATGGAGGTCAGTTAGCTCCTGTACGCATGCCCCAACATGC
CCTCCCTCTCCATCCTCATTTCTCTCATTTCCCCTTTCATTTGTGTTCAT
CCTTGAAGAAATTCGCCAAGTGGGCCGATAAAGGTACGGGTATCAACCCT
TTTTTGCCACCACGCTCCACCACCTCCTCCACGGCAGCCAAGGCAGGGGG
CCTGGTTCTCAGTCTCGGCCTGCTCGCCGTGCGCCTGCCCCTCCTCTGTA
TCACAGGCAGCTGGCTCTTCCTCGTCAGTCTTCTCACCACCCCTTGGTTC
GACATTTTGACTGGCAGTCTCCTTCTTGCCGCCTGCTATGTCAATCACGC
ACCAAACCTACACACCGGAGGCTCTCCCACTCCCGAGCAAACAAGCATCA
CTCTCCTAGCCCTAGGAGTAAGCCTGGGCCTCCTCCCCCCCCTCCATCGT
CTTTTCTCCCTCCTCCTCCTCCGCCCAGCCCTTGCCGCTGTCCTCAAAAC
TATGGGCATATCCTTTATTGAACAACATGCGAATTTACGGAAGCTCGGTT
TGAGGCCACCAGGGCACAAGCCTCTAGTTACACGCGTGGGTGCGACCATT
CAACCCGGGGACCTCCTCCTGAGCAATCACACCTCTGCCTTGGACATCCT
TTATTTTGCCAGTCGTTCCTTACCGTTGTTTTCATGTTTCACGCTTGCCC
CCGAGATAAGATTTAGCTCCCTGTCGGCTTTCGGAGCGGTGTGGAAGGCA
GGCAAAGTACCTAATAAAGCAGGCCAAGGAGTGACTTTGGACAAGGTCTT
AGCAGAAGCCAAGAGGGAGAGAAGGTCATTGGTAGTGTTTCCGGAGATGG
TACGATCGAATGGGGAAGGAATATTGGCCTTTCCCAAGGGAGTGTTGGAC
GGTTTAGCGGGGGCAGGGGAGGGAGGGGGAGGAGCAGCAGGAGGAAGCGT
AGGAGTGCATTTGTTTGGGTTTAGGTGCGTTGTGGGAGAGGAGGGGGAAT
ACGGGAGGGAGAGAAGATGAAAGCAAGCTTGGAATACACCGTGATGCAGC
TGCGGGGGTCAAGCATATTATGCACTCCCGTAAACATTCTCTTCGACGGA
AAGGGTCATAGAAAGCGATGCCAGTGGCGCCTGAGGAGGGTGGGTTGGGA
GACGTTGCCTTAATGCTGCCTATGGATGTCATGTCTTGAACATGGATTCC
ACTACGTTCTTCCTATCTTTCTTCTCTCATACACATGCATATGTCTTCCC
ACACGACAGTGCCGTCAAAGGCGACCTTCTTGCCACGCATACCGTTGGTA
GCAGCTTGCGTTTCTTTTTCAGGATCCTCTGCCGACCGCGAACCACCGTC
CACGTCACTTACGTCTGCGCGCGAGACGTGCCTTCTTATCCCGGAAGCCG
CTGCAGCAGTGGGAATAAAAGCACCAGCAGCACACCAGCGCAATGGAGTG
AGGAAATTAGAGGCCTTCTGGCCGGTATGTTGGGACGACCTAAGCTTGGG
TTGGGGTACGATGATTTCGTAACCTTTGGTAAATATTATGCGGCAGTTCA
GATTAAAGATGATAAAGCAGCAGCGGCGTTGGCGAGTGCGAGGGAGAAGC
TGTAGCGATGAGGAAGGGAGGGGG
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Coding sequence (CDS) from alignment at chr7:861644..864667-

>NO07G03090.2 ID=NO07G03090.2|Name=NO07G03090.2|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr7:861644..864667- (Nannochloropsis oceanica)
ATGGCCAAATTGCTGTGTGGAAGAAGTAAGGCTTTCATCATCAAAGCGGC
ATTCTTCATCTGCCACTTTGTACTTCGGCACATCCACCACTCACAGCCCT
TCCATCCAATTCACACCCCAGCACCAAAGGTAAAACGACAAGGAAGCTTA
TCGGCCCGCTCGCCAGCTTGCCGCAGCCCTAGCTTCCAGTCAATGGAGAA
ATTCGCCAAGTGGGCCGATAAAGGTACGGGTATCAACCCTTTTTTGCCAC
CACGCTCCACCACCTCCTCCACGGCAGCCAAGGCAGGGGGCCTGGTTCTC
AGTCTCGGCCTGCTCGCCGTGCGCCTGCCCCTCCTCTGTATCACAGGCAG
CTGGCTCTTCCTCGTCAGTCTTCTCACCACCCCTTGGTTCGACATTTTGA
CTGGCAGTCTCCTTCTTGCCGCCTGCTATGTCAATCACGCACCAAACCTA
CACACCGGAGGCTCTCCCACTCCCGAGCAAACAAGCATCACTCTCCTAGC
CCTAGGAGTAAGCCTGGGCCTCCTCCCCCCCCTCCATCGTCTTTTCTCCC
TCCTCCTCCTCCGCCCAGCCCTTGCCGCTGTCCTCAAAACTATGGGCATA
TCCTTTATTGAACAACATGCGAATTTACGGAAGCTCGGTTTGAGGCCACC
AGGGCACAAGCCTCTAGTTACACGCGTGGGTGCGACCATTCAACCCGGGG
ACCTCCTCCTGAGCAATCACACCTCTGCCTTGGACATCCTTTATTTTGCC
AGTCGTTCCTTACCGTTGTTTTCATGTTTCACGCTTGCCCCCGAGATAAG
ATTTAGCTCCCTGTCGGCTTTCGGAGCGGTGTGGAAGGCAGGCAAAGTAC
CTAATAAAGCAGGCCAAGGAGTGACTTTGGACAAGGTCTTAGCAGAAGCC
AAGAGGGAGAGAAGGTCATTGGTAGTGTTTCCGGAGATGGTACGATCGAA
TGGGGAAGGAATATTGGCCTTTCCCAAGGGAGTGTTGGACGGTTTAGCGG
GGGCAGGGGAGGGAGGGGGAGGAGCAGCAGGAGGAAGCGTAGGAGTGCAT
TTGTTTGGGTTTAGGTGCGTTGTGGGAGAGGAGGGGGAATACGGGAGGGA
GAGAAGATGA
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Synonyms
Publications