NO07G01580.1, NO07G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01580.1
Unique NameNO07G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1008
Alignment locationchr7:478169..479982 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:478169..479982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G01580.1 vs.
Match: EWM27145.1 (Pleckstrin like protein [Nannochloropsis gaditana])

HSP 1 Score: 259.2 bits (661), Expect = 7.200e-66
Identity = 129/138 (93.48%), Postives = 132/138 (95.65%), Query Frame = 0 
Query:    1 MRGTYIDPNTNIRYDTNNADFEGWLTKQSSWLKDWRRRYFILKGSKLFFAKNEAGSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEGGD-DDDGSDSEE 138
            MRGTY+DP TNIRYDTNNADFEGWLTKQSSWLK+WRRRYFILKGSKLFFAKNE  SPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGE GD DDDGSD E+
Sbjct:    1 MRGTYMDPETNIRYDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDDGSDYED 138
The following BLAST results are available for this feature:
BLAST of NO07G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27145.17.200e-6693.48Pleckstrin like protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01580NO07G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01580.1NO07G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01580.1.cds1NO07G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01580.1.cds2NO07G01580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01580.1.cds3NO07G01580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01580.1 ID=NO07G01580.1|Name=NO07G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp
CGATGCTGCTTGCTTGTCTTGTGGGTGCGTGCGGGACGGGGGGGGAGCGT
TAGCATCAAGTACCAATACCAGACATCGTCCACGAACAAAAGCATCAAGG
CATATAGAACAAGAAGGATGTGTGTGACCAAGCAAAGCCTCAGCTAACCT
CAAAGCAGCACTAAAGCAAGGATGACCCTCGCTACGCGCAGAGCCTCCTC
TGAAATTTGCCAGCGACGACAAGAGGCCCCGCCGAGCGATATGGGCAAGC
CGTCTTGTTATTCATTGGCCGCTCCCCCACTCACATGCCTCCACACGCAT
ACCAAGCAGTCTCAACGCTCACTACCCTCCTTACTCCTATGTTTCTACAG
GCTCCGCTGGTTGTTTGGATTGCGTAGCTTTGACAGCCGCCGCGTCGTCT
TGCCACCCGTCATAGTCATCGCAGAGAGCGACAGGAACACTTGCGTCTCC
AAATCGAATAGCACTCTTAGTCATGAGGGGCACCTACATAGACCCCAATA
CAAACATCCGCTACGACACCAATAATGCGGACTTTGAAGGGTGGTTGACA
AAGCAGAGCAGCTGGCTGAAGGATTGGAGGAGACGATACTTCATCCTCAA
GGGTAGCAAACTGTTCTTCGCCAAGAACGAGGCGGGATCCCCCCACGGGA
TGATCGACCTTTCGTCGTGCATGACCGTCAAATCCGCGGAGCTCAAAGCC
CAAAAGCGAAACGCTCTAGAAGTCTCCACCCCTGAGACCACCTTCTTAAT
GTACGCGGACACGGAGAAAGAAAAAGATGACTGGATCGGTGCAGTCGGTC
GTGCCATTGTGCGGAGCTCGACCACGTACACGCAGGAGGTGGGGGAGGGG
GGAGATGACGACGACGGGAGTGATAGTGAAGAGGACTAGGGCGGGGTTGG
AACGGAAGGCGGGATGTGTTTTTTGTATAGCTTACACAACAGCTCTAGCC
AATGAGGATGATAAGAAAGAGGAGACAGACAGAAAGAAAGGAAGCCGATG
AAATGTCA
back to top

protein sequence of NO07G01580.1

>NO07G01580.1-protein ID=NO07G01580.1-protein|Name=NO07G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MRGTYIDPNTNIRYDTNNADFEGWLTKQSSWLKDWRRRYFILKGSKLFFA
KNEAGSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKE
KDDWIGAVGRAIVRSSTTYTQEVGEGGDDDDGSDSEED*
back to top

mRNA from alignment at chr7:478169..479982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01580.1 ID=NO07G01580.1|Name=NO07G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at chr7:478169..479982- (Nannochloropsis oceanica)
CGATGCTGCTTGCTTGTCTTGTGGGTGCGTGCGGGACGGGGGGGGAGCGT
TAGCATCAAGTACCAATACCAGACATCGTCCACGAACAAAAGCATCAAGG
CATATAGAACAAGAAGGATGTGTGTGACCAAGCAAAGCCTCAGCTAACCT
CAAAGCAGCACTAAAGCAAGGATGACCCTCGCTACGCGCAGAGCCTCCTC
TGAAATTTGCCAGCGACGACAAGAGGCCCCGCCGAGCGATATGGGCAAGC
CGTCTTGTTATTCATTGGCCGCTCCCCCACTCACATGCCTCCACACGCAT
ACCAAGCAGTCTCAACGCTCACTACCCTCCTTACTCCTATGTTTCTACAG
GCTCCGCTGGTTGTTTGGATTGCGTAGCTTTGACAGCCGCCGCGTCGTCT
TGCCACCCGTCATAGTCATCGCAGAGAGCGACAGGAACACTTGCGTCTCC
AAATCGAATAGCACTCTTAGTCATGAGGGGCACCTACATAGACCCCAATA
CAAACATCCGCTACGACACCAATAATGCGGACTTTGAAGGTACGTGGGTG
TGCTGGCCAAGCTGTTTTTTTTAAAAGCAAATCAAGGGAAGACGGTGGGG
CTGAATGCCATAAATAGGTCAGAAAACCCACCTCTCTCAAAGAACCTAGG
GTTCTGACCCAGCAGAAACGGCCCAGAGAGTATGCCTATGATCCGTAGTC
CTGCTCTGTCTTGTGCTGTGTAGAAACTGGGTCTGCTGTATGTGGTGGCT
CAGGCTCTGGTTCCTCATTCTTGGTAGCGTTGGAGAGGCCTAGAAAAAAT
TAGTCTGGCAGAATCACAGCCCAAGAAGCCAGGGATATCACGCCACTTCC
ACGACTCAGGCATAACTGGCATCAATATAGGATTGATTGCTGCTTGGCTC
CGGTTTCAGGCTTGCCCCCAAAATATGGCTCAACAGCCTGACTAAGAAGT
GAACCAAGTTGCCAGTGGTTCCTCCGACGTTTGGGACCAGTCCCTCGATG
AAGATTGTCCATAACGAGCTCTTATGCGCACCCGTTTCCATTTACAACAT
ATAACAGGGTGGTTGACAAAGCAGAGCAGCTGGCTGAAGGATTGGAGGAG
ACGATACTTCATCCTCAAGGGTAGCAAACTGTTCTTCGCCAAGGTGGGAG
GAGGGTGGGGCGGTCGAGCTGCGGAGGGTTTAAGTCGGGTGGAGGGATCA
AAATGAATAGGGGGGGGTGGAATGGAGTGCTTGTATCCCAATTAGCTTTG
CACGTAACCTCTTGGTGCGGTCGATTGGTTCTTGGTGTGGGAATGGCCAG
GGTGTGCACCGCCACACGGTCCACTTCCCACCACCTGTTGAATTATCAGT
CTCCAAGAGGGTTTCCTCCCCCCACAGCACCCGCACTTACCATCATCCAC
TCTCTCCGCTCCCCACTATCTTAATAAACAGAACGAGGCGGGATCCCCCC
ACGGGATGATCGACCTTTCGTCGTGCATGACCGTCAAATCCGCGGAGCTC
AAAGCCCAAAAGCGAAACGCTCTAGAAGTCTCCACCCCTGAGACCACCTT
CTTAATGTACGCGGACACGGAGAAAGAAAAAGATGACTGGATCGGTGCAG
TCGGTCGTGCCATTGTGCGGAGCTCGACCACGTACACGCAGGAGGTGGGG
GAGGGGGGAGATGACGACGACGGGAGTGATAGTGAAGAGGACTAGGGCGG
GGTTGGAACGGAAGGCGGGATGTGTTTTTTGTATAGCTTACACAACAGCT
CTAGCCAATGAGGATGATAAGAAAGAGGAGACAGACAGAAAGAAAGGAAG
CCGATGAAATGTCA
back to top

Coding sequence (CDS) from alignment at chr7:478169..479982-

>NO07G01580.1 ID=NO07G01580.1|Name=NO07G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at chr7:478169..479982- (Nannochloropsis oceanica)
ATGAGGGGCACCTACATAGACCCCAATACAAACATCCGCTACGACACCAA
TAATGCGGACTTTGAAGGGTGGTTGACAAAGCAGAGCAGCTGGCTGAAGG
ATTGGAGGAGACGATACTTCATCCTCAAGGGTAGCAAACTGTTCTTCGCC
AAGAACGAGGCGGGATCCCCCCACGGGATGATCGACCTTTCGTCGTGCAT
GACCGTCAAATCCGCGGAGCTCAAAGCCCAAAAGCGAAACGCTCTAGAAG
TCTCCACCCCTGAGACCACCTTCTTAATGTACGCGGACACGGAGAAAGAA
AAAGATGACTGGATCGGTGCAGTCGGTCGTGCCATTGTGCGGAGCTCGAC
CACGTACACGCAGGAGGTGGGGGAGGGGGGAGATGACGACGACGGGAGTG
ATAGTGAAGAGGACTAG
back to top
Synonyms
Publications