NO06G03720.1, NO06G03720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03720.1
Unique NameNO06G03720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1008
Alignment locationchr6:1029199..1030206 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1029199..1030206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03720.1 vs.
Match: EWM26365.1 (prip interacting pimt [Nannochloropsis gaditana])

HSP 1 Score: 407.9 bits (1047), Expect = 3.000e-110
Identity = 225/335 (67.16%), Postives = 257/335 (76.72%), Query Frame = 0 
Query:    3 KEKEDGYNTQTAQAQAPASSSSSSFSASPSSSSTNKAAAASEAPTPPPGQSNDDARA--TSQAAAVDTSTSVSRIIYGKEVPSENDEIQYKWGAIFYNYSPAQRALLALDEVSMYSITDTRSANNTSRILQQLVGDRAVITDGCAAAGGNVLSFAQHFRQVQAVELDPQRFSLLEHNVKALGLTDTVTTYRGDFLEKLKELKQDVVFLDPPWGGKSYAENDMVDLTFGDLPLSQLCERLKPHALYIALKLPLNFNFEGFRQAITSSVVRADDRCARKQLLVILDTTGKVHPPFQRREKGGRGGGEGRGGQGNGRGGYKRERDGNQAPWTLKRKTT 336
            ++KE    T+   +Q   SSS ++ + SP+ + T  A   S     PP    D A    +S       + + SRIIYGK+VPSENDEIQYKWGAIFYNY+P QRALLALDEVSMYSITDTRSANNTSRILQQLVG+RAV+TDGCAAAGGNVLSFAQHFR+VQAVELDPQRFSLLEHNVKALGL DTVTT++GDFLEK+  L+QDVVFLDPPWGGKSY ENDMVDL+FG +PL++LCERLKPHA YIALKLPLNFN EG    +TSSVVRAD RCARKQLLVILDTTGK+H   +   +GGRG G GRGG   G+G           PW+LKRK+T
Sbjct:   34 EQKEALKETKEEDSQ---SSSVAAPTGSPAPAPTQSAETCS-----PPSNLRDGANPLPSSSPTPQGPAAAHSRIIYGKDVPSENDEIQYKWGAIFYNYTPDQRALLALDEVSMYSITDTRSANNTSRILQQLVGERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILDTTGKIHSNLREGGRGGRGRGGGRGGHNRGQG---------DRPWSLKRKST 351
The following BLAST results are available for this feature:
BLAST of NO06G03720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26365.13.000e-11067.16prip interacting pimt [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03720NO06G03720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03720.1NO06G03720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03720.1.cds1NO06G03720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03720.1 ID=NO06G03720.1|Name=NO06G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp
ATGGAGAAGGAAAAAGAGGACGGCTACAACACGCAGACAGCACAAGCGCA
AGCCCCAGCATCATCATCGTCATCCTCCTTCTCCGCCTCCCCCTCGTCCT
CCTCAACGAACAAAGCTGCCGCTGCCAGCGAGGCACCCACACCACCACCA
GGCCAATCTAACGATGACGCCCGCGCGACTTCCCAGGCTGCTGCTGTCGA
TACCTCTACCTCGGTGTCCCGCATCATTTATGGCAAGGAAGTGCCCAGCG
AAAACGACGAGATCCAGTACAAATGGGGGGCCATCTTCTACAACTATTCC
CCGGCCCAACGCGCCCTACTGGCCTTGGATGAGGTCTCCATGTACAGCAT
CACGGACACGCGCTCAGCCAACAACACTTCGCGGATTTTGCAGCAACTTG
TGGGGGACCGAGCCGTGATCACTGATGGCTGCGCTGCTGCGGGCGGGAAC
GTCCTGTCGTTTGCGCAGCATTTCCGCCAGGTCCAAGCCGTGGAGCTCGA
CCCGCAGCGGTTCAGCCTATTAGAACACAATGTGAAGGCCTTGGGATTAA
CTGATACTGTCACGACGTATCGCGGTGATTTTCTGGAGAAGTTAAAGGAG
TTGAAACAAGATGTAGTGTTCCTCGATCCGCCCTGGGGAGGAAAGTCGTA
CGCTGAGAATGACATGGTAGATTTGACCTTCGGGGACCTTCCTTTATCTC
AGCTCTGTGAGCGTCTCAAGCCCCATGCACTATACATCGCGTTGAAACTT
CCGTTGAATTTCAATTTTGAAGGGTTCAGGCAGGCGATTACTTCGTCGGT
GGTAAGGGCGGATGATCGATGCGCACGGAAACAGCTCCTGGTTATCTTGG
ACACGACGGGGAAAGTCCACCCACCGTTTCAGAGGCGAGAAAAAGGAGGA
AGAGGAGGAGGGGAAGGAAGAGGAGGACAGGGGAATGGACGGGGAGGGTA
TAAGCGGGAGAGAGATGGTAATCAGGCGCCTTGGACATTGAAACGCAAGA
CAACGTAA
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protein sequence of NO06G03720.1

>NO06G03720.1-protein ID=NO06G03720.1-protein|Name=NO06G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MEKEKEDGYNTQTAQAQAPASSSSSSFSASPSSSSTNKAAAASEAPTPPP
GQSNDDARATSQAAAVDTSTSVSRIIYGKEVPSENDEIQYKWGAIFYNYS
PAQRALLALDEVSMYSITDTRSANNTSRILQQLVGDRAVITDGCAAAGGN
VLSFAQHFRQVQAVELDPQRFSLLEHNVKALGLTDTVTTYRGDFLEKLKE
LKQDVVFLDPPWGGKSYAENDMVDLTFGDLPLSQLCERLKPHALYIALKL
PLNFNFEGFRQAITSSVVRADDRCARKQLLVILDTTGKVHPPFQRREKGG
RGGGEGRGGQGNGRGGYKRERDGNQAPWTLKRKTT*
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mRNA from alignment at chr6:1029199..1030206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03720.1 ID=NO06G03720.1|Name=NO06G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp|location=Sequence derived from alignment at chr6:1029199..1030206+ (Nannochloropsis oceanica)
ATGGAGAAGGAAAAAGAGGACGGCTACAACACGCAGACAGCACAAGCGCA
AGCCCCAGCATCATCATCGTCATCCTCCTTCTCCGCCTCCCCCTCGTCCT
CCTCAACGAACAAAGCTGCCGCTGCCAGCGAGGCACCCACACCACCACCA
GGCCAATCTAACGATGACGCCCGCGCGACTTCCCAGGCTGCTGCTGTCGA
TACCTCTACCTCGGTGTCCCGCATCATTTATGGCAAGGAAGTGCCCAGCG
AAAACGACGAGATCCAGTACAAATGGGGGGCCATCTTCTACAACTATTCC
CCGGCCCAACGCGCCCTACTGGCCTTGGATGAGGTCTCCATGTACAGCAT
CACGGACACGCGCTCAGCCAACAACACTTCGCGGATTTTGCAGCAACTTG
TGGGGGACCGAGCCGTGATCACTGATGGCTGCGCTGCTGCGGGCGGGAAC
GTCCTGTCGTTTGCGCAGCATTTCCGCCAGGTCCAAGCCGTGGAGCTCGA
CCCGCAGCGGTTCAGCCTATTAGAACACAATGTGAAGGCCTTGGGATTAA
CTGATACTGTCACGACGTATCGCGGTGATTTTCTGGAGAAGTTAAAGGAG
TTGAAACAAGATGTAGTGTTCCTCGATCCGCCCTGGGGAGGAAAGTCGTA
CGCTGAGAATGACATGGTAGATTTGACCTTCGGGGACCTTCCTTTATCTC
AGCTCTGTGAGCGTCTCAAGCCCCATGCACTATACATCGCGTTGAAACTT
CCGTTGAATTTCAATTTTGAAGGGTTCAGGCAGGCGATTACTTCGTCGGT
GGTAAGGGCGGATGATCGATGCGCACGGAAACAGCTCCTGGTTATCTTGG
ACACGACGGGGAAAGTCCACCCACCGTTTCAGAGGCGAGAAAAAGGAGGA
AGAGGAGGAGGGGAAGGAAGAGGAGGACAGGGGAATGGACGGGGAGGGTA
TAAGCGGGAGAGAGATGGTAATCAGGCGCCTTGGACATTGAAACGCAAGA
CAACGTAA
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Coding sequence (CDS) from alignment at chr6:1029199..1030206+

>NO06G03720.1 ID=NO06G03720.1|Name=NO06G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at chr6:1029199..1030206+ (Nannochloropsis oceanica)
ATGGAGAAGGAAAAAGAGGACGGCTACAACACGCAGACAGCACAAGCGCA
AGCCCCAGCATCATCATCGTCATCCTCCTTCTCCGCCTCCCCCTCGTCCT
CCTCAACGAACAAAGCTGCCGCTGCCAGCGAGGCACCCACACCACCACCA
GGCCAATCTAACGATGACGCCCGCGCGACTTCCCAGGCTGCTGCTGTCGA
TACCTCTACCTCGGTGTCCCGCATCATTTATGGCAAGGAAGTGCCCAGCG
AAAACGACGAGATCCAGTACAAATGGGGGGCCATCTTCTACAACTATTCC
CCGGCCCAACGCGCCCTACTGGCCTTGGATGAGGTCTCCATGTACAGCAT
CACGGACACGCGCTCAGCCAACAACACTTCGCGGATTTTGCAGCAACTTG
TGGGGGACCGAGCCGTGATCACTGATGGCTGCGCTGCTGCGGGCGGGAAC
GTCCTGTCGTTTGCGCAGCATTTCCGCCAGGTCCAAGCCGTGGAGCTCGA
CCCGCAGCGGTTCAGCCTATTAGAACACAATGTGAAGGCCTTGGGATTAA
CTGATACTGTCACGACGTATCGCGGTGATTTTCTGGAGAAGTTAAAGGAG
TTGAAACAAGATGTAGTGTTCCTCGATCCGCCCTGGGGAGGAAAGTCGTA
CGCTGAGAATGACATGGTAGATTTGACCTTCGGGGACCTTCCTTTATCTC
AGCTCTGTGAGCGTCTCAAGCCCCATGCACTATACATCGCGTTGAAACTT
CCGTTGAATTTCAATTTTGAAGGGTTCAGGCAGGCGATTACTTCGTCGGT
GGTAAGGGCGGATGATCGATGCGCACGGAAACAGCTCCTGGTTATCTTGG
ACACGACGGGGAAAGTCCACCCACCGTTTCAGAGGCGAGAAAAAGGAGGA
AGAGGAGGAGGGGAAGGAAGAGGAGGACAGGGGAATGGACGGGGAGGGTA
TAAGCGGGAGAGAGATGGTAATCAGGCGCCTTGGACATTGAAACGCAAGA
CAACGTAA
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Synonyms
Publications