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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr6 | genome | chr6:973613..976775 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03530.1 vs.
Match: EWM26348.1 (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 190.7 bits (483), Expect = 7.700e-45 Identity = 102/205 (49.76%), Postives = 131/205 (63.90%), Query Frame = 0
Query: 8 AFSILTWNIYFAPHQWATRMQHILAECERLQPDVLCFQEVLPPFMALLQDEEKPTELMISSNNDENASGGRNSWLARNDYICSTLDPKGVVPYGVLTMVKRKHRPHFQSLDLPSRMGRRLLLTHLESMGRGVEGEEVE-------SKGKLIEEWIIGNVHLESLDSTTLRAEQLRNAGVSLSLKEER-INVVLCGDFNFCSERNY 205
AFS+LTWN+YFAP QW TRM++IL E RLQPDV+CFQEV+P F+ LLQ SN+D +WL NDY+ STL+P + PYGVLT+ KR H+P F+++DLP+RMGRRLLLTHL +G G +E SKG + W +GNVHLESL+S LRAEQL +L E+R V+L GDF ++ +
Sbjct: 16 AFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSD-------TTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGH--KGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSNKTGW 211
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03530.1 ID=NO06G03530.1|Name=NO06G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=3009bp
AGGCACTGGGAGGCGTGACACAACTATCAATAGCCCGTGGACCATCCGTG
ACCGCCGCAGCGGCAATCACCACAGTATAGCGCAGGAGCGAGAAAATTAG
TTGAGGTTCCCACACATGGCCGGTCTCGTTCCAACCGCCTTTTCGATCTT
GACTTGGAACATTTACTTTGCGCCGCATCAATGGGCAACGCGGATGCAAC
ATATTTTAGCCGAGTGTGAGCGATTACAGCCGGACGTGCTGTGCTTTCAA
GAGGTTTTGCCACCCTTTATGGCTTTGTTGCAGGACGAAGAAAAGCCGAC
GGAGTTGATGATCAGCTCCAATAACGACGAAAACGCCAGCGGTGGCCGCA
ACAGCTGGCTGGCACGGAATGACTACATATGTTCAACCCTTGATCCTAAA
GGGGTTGTACCTTACGGCGTGTTGACGATGGTCAAACGCAAGCATCGCCC
CCACTTCCAGAGCCTGGATTTACCAAGCCGCATGGGAAGAAGACTGCTCT
TGACCCACCTTGAAAGTATGGGGCGGGGAGTCGAGGGAGAAGAAGTCGAA
AGTAAAGGAAAACTAATTGAAGAGTGGATCATAGGTAATGTTCACTTGGA
GTCCTTGGATTCCACGACGCTGCGGGCGGAGCAGTTGAGAAATGCCGGTG
TGAGCCTGAGCTTGAAGGAGGAGAGGATAAATGTAGTCCTGTGCGGGGAC
TTTAATTTCTGCTCGGAACGCAATTACGACATTGGCGACTCCTTACAGAG
TCTTGAGAACGAAGTTCTCCCGTTGGCACTACCCTCTTTCCAAGACCTAT
GGCCCTCGGTGAAAAAAGGGACCAAAGAGGAGAAAGAAGGCTTCACATTC
GACGGGACGAGAAACACACTCATTCGCATGCCACGACCAGACCCGCAAAT
GCGGTACGACAGGGTGTTGTGGAGGGGAACTGGACGGAAAGAGCAGCAGC
AGCAGCAGCAGCAGCAGAAGCTCCAGAAATTCCAGAATCAGGCGCAAGAG
AAATTGAAAGGCTCGATGGCGGAAGTGGCAGGGAGGGGGTGGAGGCCACG
CGATATACGTTTGGTGGGAACTGATCCGGTGAAGGGAGGTCTGTTCCTCT
CCGACCATTTTGGGCTGCTTGCCACGTTTGAAAAAGAGCAATGATGCCCA
TATAGAACAGAGGAGAATCTGGAAATATAAGGTGTACACAGCGCAAAGTA
AGTCGAGCACATAGACGTAAAAAAACAATGATTGATGCTGCTGTTTTTAA
TTTGCGCATTCATTTTTTCGATAATCTATGCGTGTGGTTGTGGCTGTGGC
GATATTGACGAAGAGGGCGAGGAAAAGGAAGAGGGCGGCGATTGAGGAAT
TGTTGTCATCGGTTTTGTGGAAGACAGCAAAGTAGACGGTATTCCTGGTA
CTGTAGATTGCTGCTGCTGCCGCTGTTGCTCCTCCTCAACCTTTTCTCGG
AGTGTAGGCTGTGTGAAGAATGCGGAGCTCCACGGACCCACTTCATCAAC
AGGCCGACTTTTAAGGACTGTAATGATGTTACGAGAATGACAATTAACAT
GTATCGAACAGTAACAAATGTGGTTTTTAAACGAAAGGAAAGAGGTATGG
GAAAACTTATGAGATCATGTACAAAAGTTGCTTTCGCACCCGCTGACGTT
TCAGGAGGAGGGAGGAGCGTACACTTGCCACAGGTGCTTTGTCATAATTG
TTCTCTTCGAGCAATTGGAGTGAGTGGAGGTGTGTCCCTCCAGAGCACGA
GACTTCTACACTAATCTACCGGCATAAACGTACCTTCTGACATATAAAGT
CTCATGATGCTTTTCACCTCGGGATGCCGTCTCATGTAGTCCTCGTTCTC
TGTCCGAAGTTGCGCACGATTTTTAGTTGGATGTACGTCCATGATGGCGG
GGGAGGGAATTGTGGCGTTACTGCTGTTGCTGCTGCTGGGGGTAGTGGTT
GTCGTATCCGTAAAGCAGGATGGGGCAGGCAGTTGGGCTTGGGCTGGTTG
TCCTGCGTCGTTTTGCCGGGTGGTAGAGCCATTCCTGCTGATGCTGGTGG
CCCTAAGTGTGCTCTCACTCATGGCCTGTGTGTACGTATGATTGTCGAGG
CGTTGAGTGAGTAGATTGTAAGTGCGATCGGGGAGAGAGAGGGGGGAAAG
GCAGTACTTCATGAGTGGGGCTTCGCCTATAAGTTGTGAAGCCTGCTCTG
AGTCGGCCTGGAGGAGTCTGTCCCTGAGAGGCTGTTGTGGGCACGTGCAC
CGTGCACCTGGAAAACACGTGTAAATCTGTGCATGTGCATACACGGTGCA
TATGCGCACGCAAACGCACAAGCGTGGGAAGAGAAAGACCGCGGTTGGGG
GGGGGATGCAGGTGTGAAAGTGGCTGGTAAAAAGGGCTGCGTTGGCACGT
ATTGAATTGGCTCAGAGAAGGCTTCTTCAGGCGTACGACATTCACTCAGT
GCGCAAATCGATAGACTCACTACCCAAATACCAGGAAAGAAACCTGGACC
TAAGCCGGACTTGGTTCTTTATGGCATCCTCGGTGAGGGCTTATTATGGC
GTGTTTTAAGGAGCAAACCATCCCTGTACCATGCACTCCCACGTGCAGGG
CGCTCAGGACTTACAAGGTTGAATCATCTCGGGGTTGTACGGCCATGACA
CATCTATGCCTGTCCTCGATCATAGGTAGTAGATTGTAGAAGTAATATCT
CAACGTATGTCAAAGTTTCAGTTATTCCACTTCGACCTACCCTCTTTCTA
ATTTGTGAGAGAAACGGCTTTCAGATCTATCGAGAGTTATTTCGATTGAT
TTTGTCCATGGCCAACGACAAGACCAGTCCGTTTTCACCGTGCTTCGACC
TTGGTTGGCTACACGCGTGATTAACTCTTATTGATCTGCAAGACCATAGC
TATCCACAAACTCACTTCCCCTTCCCTGAGAGATTCAAAAACAAGTCTCA
CGGGTCGTGAGTGGACAGAAATCAAATACTAAACAAACAAACAAACAACA
AAATCTGTG back to topprotein sequence of NO06G03530.1 >NO06G03530.1-protein ID=NO06G03530.1-protein|Name=NO06G03530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MAGLVPTAFSILTWNIYFAPHQWATRMQHILAECERLQPDVLCFQEVLPP
FMALLQDEEKPTELMISSNNDENASGGRNSWLARNDYICSTLDPKGVVPY
GVLTMVKRKHRPHFQSLDLPSRMGRRLLLTHLESMGRGVEGEEVESKGKL
IEEWIIGNVHLESLDSTTLRAEQLRNAGVSLSLKEERINVVLCGDFNFCS
ERNYDIGDSLQSLENEVLPLALPSFQDLWPSVKKGTKEEKEGFTFDGTRN
TLIRMPRPDPQMRYDRVLWRGTGRKEQQQQQQQQKLQKFQNQAQEKLKGS
MAEVAGRGWRPRDIRLVGTDPVKGGLFLSDHFGLLATFEKEQ* back to topmRNA from alignment at chr6:973613..976775- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03530.1 ID=NO06G03530.1|Name=NO06G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=3163bp|location=Sequence derived from alignment at chr6:973613..976775- (Nannochloropsis oceanica)
AGGCACTGGGAGGCGTGACACAACTATCAATAGCCCGTGGACCATCCGTG
ACCGCCGCAGCGGCAATCACCACAGTATAGCGCAGGAGCGAGAAAATTAG
TTGAGGTTCCCACACATGGCCGGTCTCGTTCCAACCGCCTTTTCGATCTT
GACTTGGAACATTTACTTTGCGCCGCATCAATGGGCAACGCGGATGCAAC
ATATTTTAGCCGAGTGTGAGCGATTACAGCCGGACGTGCTGTGCTTTCAA
GAGGTTTTGCCACCCTTTATGGCTTTGTTGCAGGACGAAGAAAAGCCGAC
GGAGTTGATGATCAGCTCCAATAACGACGAAAACGCCAGCGGTGGCCGCA
ACAGCTGGCTGGCACGGAATGACTACATATGTTCAACCCTTGATCCTAAA
GGGGTTGTACCTTACGGCGTGTTGACGATGGTCAAACGCAAGCATCGCCC
CCACTTCCAGAGCCTGGATTTACCAAGCCGCATGGGAAGAAGACTGCTCT
TGACCCACCTTGAAAGTATGGGGCGGGGAGTCGAGGGAGAAGAAGTCGAA
AGTAAAGGAAAACTAATTGAAGAGTGGATCATAGGTAATGTTCACTTGGA
GTCCTTGGATTCCACGACGCTGCGGGCGGAGCAGTTGAGAAATGCCGGTG
TGAGCCTGAGCTTGAAGGAGGAGAGGATAAATGTAGTCCTGTGCGGGGAC
TTTAAGTAAGTGGGGTTGGTGTGTATTTCACTCGACAAGTCGAAGGTGGG
TGTGTATATTTCATTCTGGTATCAAACAATGGAAGATGCATTCTCAGGCA
CCGACATGCCCTTTCGCCTCCCCCCTCCTCCCGTCCTCCACTTCCTTTCC
CCCGCCCAGTTTCTGCTCGGAACGCAATTACGACATTGGCGACTCCTTAC
AGAGTCTTGAGAACGAAGTTCTCCCGTTGGCACTACCCTCTTTCCAAGAC
CTATGGCCCTCGGTGAAAAAAGGGACCAAAGAGGAGAAAGAAGGCTTCAC
ATTCGACGGGACGAGAAACACACTCATTCGCATGCCACGACCAGACCCGC
AAATGCGGTACGACAGGGTGTTGTGGAGGGGAACTGGACGGAAAGAGCAG
CAGCAGCAGCAGCAGCAGCAGAAGCTCCAGAAATTCCAGAATCAGGCGCA
AGAGAAATTGAAAGGCTCGATGGCGGAAGTGGCAGGGAGGGGGTGGAGGC
CACGCGATATACGTTTGGTGGGAACTGATCCGGTGAAGGGAGGTCTGTTC
CTCTCCGACCATTTTGGGCTGCTTGCCACGTTTGAAAAAGAGCAATGATG
CCCATATAGAACAGAGGAGAATCTGGAAATATAAGGTGTACACAGCGCAA
AGTAAGTCGAGCACATAGACGTAAAAAAACAATGATTGATGCTGCTGTTT
TTAATTTGCGCATTCATTTTTTCGATAATCTATGCGTGTGGTTGTGGCTG
TGGCGATATTGACGAAGAGGGCGAGGAAAAGGAAGAGGGCGGCGATTGAG
GAATTGTTGTCATCGGTTTTGTGGAAGACAGCAAAGTAGACGGTATTCCT
GGTACTGTAGATTGCTGCTGCTGCCGCTGTTGCTCCTCCTCAACCTTTTC
TCGGAGTGTAGGCTGTGTGAAGAATGCGGAGCTCCACGGACCCACTTCAT
CAACAGGCCGACTTTTAAGGACTGTAATGATGTTACGAGAATGACAATTA
ACATGTATCGAACAGTAACAAATGTGGTTTTTAAACGAAAGGAAAGAGGT
ATGGGAAAACTTATGAGATCATGTACAAAAGTTGCTTTCGCACCCGCTGA
CGTTTCAGGAGGAGGGAGGAGCGTACACTTGCCACAGGTGCTTTGTCATA
ATTGTTCTCTTCGAGCAATTGGAGTGAGTGGAGGTGTGTCCCTCCAGAGC
ACGAGACTTCTACACTAATCTACCGGCATAAACGTACCTTCTGACATATA
AAGTCTCATGATGCTTTTCACCTCGGGATGCCGTCTCATGTAGTCCTCGT
TCTCTGTCCGAAGTTGCGCACGATTTTTAGTTGGATGTACGTCCATGATG
GCGGGGGAGGGAATTGTGGCGTTACTGCTGTTGCTGCTGCTGGGGGTAGT
GGTTGTCGTATCCGTAAAGCAGGATGGGGCAGGCAGTTGGGCTTGGGCTG
GTTGTCCTGCGTCGTTTTGCCGGGTGGTAGAGCCATTCCTGCTGATGCTG
GTGGCCCTAAGTGTGCTCTCACTCATGGCCTGTGTGTACGTATGATTGTC
GAGGCGTTGAGTGAGTAGATTGTAAGTGCGATCGGGGAGAGAGAGGGGGG
AAAGGCAGTACTTCATGAGTGGGGCTTCGCCTATAAGTTGTGAAGCCTGC
TCTGAGTCGGCCTGGAGGAGTCTGTCCCTGAGAGGCTGTTGTGGGCACGT
GCACCGTGCACCTGGAAAACACGTGTAAATCTGTGCATGTGCATACACGG
TGCATATGCGCACGCAAACGCACAAGCGTGGGAAGAGAAAGACCGCGGTT
GGGGGGGGGATGCAGGTGTGAAAGTGGCTGGTAAAAAGGGCTGCGTTGGC
ACGTATTGAATTGGCTCAGAGAAGGCTTCTTCAGGCGTACGACATTCACT
CAGTGCGCAAATCGATAGACTCACTACCCAAATACCAGGAAAGAAACCTG
GACCTAAGCCGGACTTGGTTCTTTATGGCATCCTCGGTGAGGGCTTATTA
TGGCGTGTTTTAAGGAGCAAACCATCCCTGTACCATGCACTCCCACGTGC
AGGGCGCTCAGGACTTACAAGGTTGAATCATCTCGGGGTTGTACGGCCAT
GACACATCTATGCCTGTCCTCGATCATAGGTAGTAGATTGTAGAAGTAAT
ATCTCAACGTATGTCAAAGTTTCAGTTATTCCACTTCGACCTACCCTCTT
TCTAATTTGTGAGAGAAACGGCTTTCAGATCTATCGAGAGTTATTTCGAT
TGATTTTGTCCATGGCCAACGACAAGACCAGTCCGTTTTCACCGTGCTTC
GACCTTGGTTGGCTACACGCGTGATTAACTCTTATTGATCTGCAAGACCA
TAGCTATCCACAAACTCACTTCCCCTTCCCTGAGAGATTCAAAAACAAGT
CTCACGGGTCGTGAGTGGACAGAAATCAAATACTAAACAAACAAACAAAC
AACAAAATCTGTG back to topCoding sequence (CDS) from alignment at chr6:973613..976775- >NO06G03530.1 ID=NO06G03530.1|Name=NO06G03530.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr6:973613..976775- (Nannochloropsis oceanica)
ATGGCCGGTCTCGTTCCAACCGCCTTTTCGATCTTGACTTGGAACATTTA
CTTTGCGCCGCATCAATGGGCAACGCGGATGCAACATATTTTAGCCGAGT
GTGAGCGATTACAGCCGGACGTGCTGTGCTTTCAAGAGGTTTTGCCACCC
TTTATGGCTTTGTTGCAGGACGAAGAAAAGCCGACGGAGTTGATGATCAG
CTCCAATAACGACGAAAACGCCAGCGGTGGCCGCAACAGCTGGCTGGCAC
GGAATGACTACATATGTTCAACCCTTGATCCTAAAGGGGTTGTACCTTAC
GGCGTGTTGACGATGGTCAAACGCAAGCATCGCCCCCACTTCCAGAGCCT
GGATTTACCAAGCCGCATGGGAAGAAGACTGCTCTTGACCCACCTTGAAA
GTATGGGGCGGGGAGTCGAGGGAGAAGAAGTCGAAAGTAAAGGAAAACTA
ATTGAAGAGTGGATCATAGGTAATGTTCACTTGGAGTCCTTGGATTCCAC
GACGCTGCGGGCGGAGCAGTTGAGAAATGCCGGTGTGAGCCTGAGCTTGA
AGGAGGAGAGGATAAATGTAGTCCTGTGCGGGGACTTTAATTTCTGCTCG
GAACGCAATTACGACATTGGCGACTCCTTACAGAGTCTTGAGAACGAAGT
TCTCCCGTTGGCACTACCCTCTTTCCAAGACCTATGGCCCTCGGTGAAAA
AAGGGACCAAAGAGGAGAAAGAAGGCTTCACATTCGACGGGACGAGAAAC
ACACTCATTCGCATGCCACGACCAGACCCGCAAATGCGGTACGACAGGGT
GTTGTGGAGGGGAACTGGACGGAAAGAGCAGCAGCAGCAGCAGCAGCAGC
AGAAGCTCCAGAAATTCCAGAATCAGGCGCAAGAGAAATTGAAAGGCTCG
ATGGCGGAAGTGGCAGGGAGGGGGTGGAGGCCACGCGATATACGTTTGGT
GGGAACTGATCCGGTGAAGGGAGGTCTGTTCCTCTCCGACCATTTTGGGC
TGCTTGCCACGTTTGAAAAAGAGCAATGA back to top
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