NO06G02490.1, NO06G02490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02490.1
Unique NameNO06G02490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length999
Alignment locationchr6:700948..701946 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:700948..701946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G02490.1 vs.
Match: EWM26264.1 (putative methyltransferase bcdin3d [Nannochloropsis gaditana])

HSP 1 Score: 245.4 bits (625), Expect = 2.600e-61
Identity = 157/349 (44.99%), Postives = 204/349 (58.45%), Query Frame = 0 
Query:    9 APAGALEPSKDNDSKLITSITNSRYARALHNGHLRGNFQDYYAFHPVAPRITALLGASGTP---ASTLKQDIKGALQHILHCAKQGDSN----EPLLIADWGCNSGDLTAALCRRLRELQPDRRVVGLGLDLDANLITRATSKYSDIEEGVG----VTFAAVDLVSDWSRAEKLMRAFLKEHHTDGIGRQKEAEQK---------GRVPTR-----KFDILTIFSTTMWIHLVHGEEALKDFLVHASEWTYCLVVEPQTHKNYKTARRRLKRVGLQPCQHFNAMADSEYPRMLMTCADRGLVREFEGSMNMGKSSDWGRELHIFWKREEGKEENYEGGDKMRNKLSKKR 333
            +P+ A   SK +      S +  +Y+ A+  GH  GNF  YY+FHP   R+ ALLG   T    A   +   + AL  IL   K GD+     + LLIADWGCN+G LT  LCRRLR L   R V GLGLD D NLI RA  +  + E+  G    V+FAAVDLV+DW+RAE++MRAFL +    G G   ++  +         GR  TR     KFD+LTIFSTTMWIHLVHGE AL+ FL  A+EWT+CLV+EPQT K+YK AR+RLKR G  P  +F  +  ++   M+M   D      F  ++N+G SS WGREL +++ REE  EE  EG   + +   K+R
Sbjct:    4 SPSLAHGDSKADTGSERLSSSIPKYSIAVQGGHFNGNFPHYYSFHPFESRVAALLGIPSTCDRLALGKQNKNEAALAGIL---KYGDNKNGGRKRLLIADWGCNTGRLTRELCRRLRNLS-HRPVAGLGLDFDENLINRAKEESVEEEKIEGECGDVSFAAVDLVTDWARAEEIMRAFLDKDGDLG-GNDDDSRPRHSRPLESVDGREETRQGRTIKFDLLTIFSTTMWIHLVHGENALETFLRRAAEWTHCLVLEPQTQKSYKAARKRLKRAGFDPAVYFQPVTVADTSAMVMR-EDGKREWGFTKAINLGASSAWGRELFVYY-REERHEEEEEGESDIGDASEKER 345
The following BLAST results are available for this feature:
BLAST of NO06G02490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26264.12.600e-6144.99putative methyltransferase bcdin3d [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02490NO06G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02490.1NO06G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02490.1.cds1NO06G02490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02490.1 ID=NO06G02490.1|Name=NO06G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
ATGGCCTCTCCCGCCCAACCACCAGCACCAGCAGGAGCTCTAGAACCGTC
CAAAGACAACGACAGCAAGCTTATAACCTCTATCACCAACTCACGCTACG
CCCGAGCACTGCACAACGGGCATCTAAGAGGCAATTTTCAAGACTACTAT
GCCTTCCATCCTGTCGCGCCGAGAATCACTGCCTTGCTGGGCGCGTCTGG
GACGCCTGCCAGTACACTTAAGCAGGACATCAAGGGGGCATTACAACACA
TACTTCACTGTGCAAAACAGGGGGACAGTAATGAGCCCTTGCTGATCGCA
GATTGGGGGTGTAATTCAGGTGACTTGACGGCAGCCTTGTGCCGACGTCT
CCGTGAGCTTCAACCAGACCGGCGGGTGGTGGGGTTGGGACTGGACTTGG
ATGCGAATCTTATAACGCGGGCCACTAGCAAGTACAGTGACATTGAAGAA
GGGGTAGGTGTGACCTTTGCAGCTGTGGATTTGGTATCGGATTGGTCACG
GGCTGAGAAACTCATGCGGGCGTTCCTGAAGGAGCACCACACAGATGGTA
TCGGCCGCCAGAAAGAAGCAGAGCAAAAAGGACGTGTACCGACAAGAAAG
TTCGATATATTGACCATCTTTTCGACCACCATGTGGATTCATCTTGTCCA
TGGTGAGGAGGCCTTGAAAGACTTTTTGGTGCACGCCTCAGAATGGACAT
ATTGCCTTGTCGTCGAGCCACAGACTCACAAAAATTATAAAACTGCCCGA
AGACGTCTCAAACGGGTGGGACTGCAGCCGTGTCAGCATTTTAACGCTAT
GGCTGATTCGGAATACCCGCGCATGTTAATGACGTGTGCAGACAGAGGGC
TCGTGAGGGAGTTTGAAGGTTCGATGAACATGGGCAAGTCTAGTGATTGG
GGGAGGGAGCTGCACATTTTTTGGAAGAGGGAAGAGGGAAAGGAGGAAAA
TTATGAGGGAGGGGACAAAATGCGAAATAAATTGAGCAAAAAACGATAG
back to top

protein sequence of NO06G02490.1

>NO06G02490.1-protein ID=NO06G02490.1-protein|Name=NO06G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MASPAQPPAPAGALEPSKDNDSKLITSITNSRYARALHNGHLRGNFQDYY
AFHPVAPRITALLGASGTPASTLKQDIKGALQHILHCAKQGDSNEPLLIA
DWGCNSGDLTAALCRRLRELQPDRRVVGLGLDLDANLITRATSKYSDIEE
GVGVTFAAVDLVSDWSRAEKLMRAFLKEHHTDGIGRQKEAEQKGRVPTRK
FDILTIFSTTMWIHLVHGEEALKDFLVHASEWTYCLVVEPQTHKNYKTAR
RRLKRVGLQPCQHFNAMADSEYPRMLMTCADRGLVREFEGSMNMGKSSDW
GRELHIFWKREEGKEENYEGGDKMRNKLSKKR*
back to top

mRNA from alignment at chr6:700948..701946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02490.1 ID=NO06G02490.1|Name=NO06G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp|location=Sequence derived from alignment at chr6:700948..701946- (Nannochloropsis oceanica)
ATGGCCTCTCCCGCCCAACCACCAGCACCAGCAGGAGCTCTAGAACCGTC
CAAAGACAACGACAGCAAGCTTATAACCTCTATCACCAACTCACGCTACG
CCCGAGCACTGCACAACGGGCATCTAAGAGGCAATTTTCAAGACTACTAT
GCCTTCCATCCTGTCGCGCCGAGAATCACTGCCTTGCTGGGCGCGTCTGG
GACGCCTGCCAGTACACTTAAGCAGGACATCAAGGGGGCATTACAACACA
TACTTCACTGTGCAAAACAGGGGGACAGTAATGAGCCCTTGCTGATCGCA
GATTGGGGGTGTAATTCAGGTGACTTGACGGCAGCCTTGTGCCGACGTCT
CCGTGAGCTTCAACCAGACCGGCGGGTGGTGGGGTTGGGACTGGACTTGG
ATGCGAATCTTATAACGCGGGCCACTAGCAAGTACAGTGACATTGAAGAA
GGGGTAGGTGTGACCTTTGCAGCTGTGGATTTGGTATCGGATTGGTCACG
GGCTGAGAAACTCATGCGGGCGTTCCTGAAGGAGCACCACACAGATGGTA
TCGGCCGCCAGAAAGAAGCAGAGCAAAAAGGACGTGTACCGACAAGAAAG
TTCGATATATTGACCATCTTTTCGACCACCATGTGGATTCATCTTGTCCA
TGGTGAGGAGGCCTTGAAAGACTTTTTGGTGCACGCCTCAGAATGGACAT
ATTGCCTTGTCGTCGAGCCACAGACTCACAAAAATTATAAAACTGCCCGA
AGACGTCTCAAACGGGTGGGACTGCAGCCGTGTCAGCATTTTAACGCTAT
GGCTGATTCGGAATACCCGCGCATGTTAATGACGTGTGCAGACAGAGGGC
TCGTGAGGGAGTTTGAAGGTTCGATGAACATGGGCAAGTCTAGTGATTGG
GGGAGGGAGCTGCACATTTTTTGGAAGAGGGAAGAGGGAAAGGAGGAAAA
TTATGAGGGAGGGGACAAAATGCGAAATAAATTGAGCAAAAAACGATAG
back to top

Coding sequence (CDS) from alignment at chr6:700948..701946-

>NO06G02490.1 ID=NO06G02490.1|Name=NO06G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr6:700948..701946- (Nannochloropsis oceanica)
ATGGCCTCTCCCGCCCAACCACCAGCACCAGCAGGAGCTCTAGAACCGTC
CAAAGACAACGACAGCAAGCTTATAACCTCTATCACCAACTCACGCTACG
CCCGAGCACTGCACAACGGGCATCTAAGAGGCAATTTTCAAGACTACTAT
GCCTTCCATCCTGTCGCGCCGAGAATCACTGCCTTGCTGGGCGCGTCTGG
GACGCCTGCCAGTACACTTAAGCAGGACATCAAGGGGGCATTACAACACA
TACTTCACTGTGCAAAACAGGGGGACAGTAATGAGCCCTTGCTGATCGCA
GATTGGGGGTGTAATTCAGGTGACTTGACGGCAGCCTTGTGCCGACGTCT
CCGTGAGCTTCAACCAGACCGGCGGGTGGTGGGGTTGGGACTGGACTTGG
ATGCGAATCTTATAACGCGGGCCACTAGCAAGTACAGTGACATTGAAGAA
GGGGTAGGTGTGACCTTTGCAGCTGTGGATTTGGTATCGGATTGGTCACG
GGCTGAGAAACTCATGCGGGCGTTCCTGAAGGAGCACCACACAGATGGTA
TCGGCCGCCAGAAAGAAGCAGAGCAAAAAGGACGTGTACCGACAAGAAAG
TTCGATATATTGACCATCTTTTCGACCACCATGTGGATTCATCTTGTCCA
TGGTGAGGAGGCCTTGAAAGACTTTTTGGTGCACGCCTCAGAATGGACAT
ATTGCCTTGTCGTCGAGCCACAGACTCACAAAAATTATAAAACTGCCCGA
AGACGTCTCAAACGGGTGGGACTGCAGCCGTGTCAGCATTTTAACGCTAT
GGCTGATTCGGAATACCCGCGCATGTTAATGACGTGTGCAGACAGAGGGC
TCGTGAGGGAGTTTGAAGGTTCGATGAACATGGGCAAGTCTAGTGATTGG
GGGAGGGAGCTGCACATTTTTTGGAAGAGGGAAGAGGGAAAGGAGGAAAA
TTATGAGGGAGGGGACAAAATGCGAAATAAATTGAGCAAAAAACGATAG
back to top
Synonyms
Publications