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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:466767..468923 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01470.3 vs.
Match: EWM26182.1 (alpha beta fold family protein [Nannochloropsis gaditana]) HSP 1 Score: 498.8 bits (1283), Expect = 1.300e-137 Identity = 236/281 (83.99%), Postives = 257/281 (91.46%), Query Frame = 0
Query: 59 PLVASVMDQ-AMPGLPKKTTRPDLPTTFWIWKRSPGEEYKIRYHQSGEKGPALVLIHGFGGNANHWAQNVPDLNPHYRVYALDLLGYGYSDKPSPKGRPPTELFNFETWSAMTEAFITDIIHPQSPLDKPEEEEKDGVYLVCNSVGGLVGLQLAVDRPSLVRGVMLLNISLRMLHLKKQPWYLKPFVKALQTTLRETRLGQLFFAQVATPEGVKNALSQAYHDKARVTDELVEAILKPGLEPGAVDVFLDFISYSGGPLPEELLPKVNVPVYIGWGEEDPW 339
PL+ S +DQ +P P K+TRP LPTTFW WKR PGE+Y+IRYHQSG+KGPA++LIHGFGGNA+HWAQNVPDLNPHYRV+ALDLLGYGYSDKPSPKGR PTELFNFETW+AMTEAF+ DI+H Q+ EE GVY+VCNSVGGLVGLQLAVDRP LV+GVMLLNISLRMLHLKKQPW+LKPFVKALQTTLRETRLGQLFFAQVATP+GVKNALSQAYHDK RVTDELVEAILKPGLEPGAVDVFLDFISYSGGPLPEELLP+V+VPVYIGWGEEDPW
Sbjct: 48 PLMVSTLDQETLP--PPKSTRPQLPTTFWTWKRGPGEDYRIRYHQSGDKGPAVILIHGFGGNADHWAQNVPDLNPHYRVFALDLLGYGYSDKPSPKGRAPTELFNFETWAAMTEAFVKDIVHEQALAGVSPSEE--GVYVVCNSVGGLVGLQLAVDRPDLVKGVMLLNISLRMLHLKKQPWFLKPFVKALQTTLRETRLGQLFFAQVATPQGVKNALSQAYHDKTRVTDELVEAILKPGLEPGAVDVFLDFISYSGGPLPEELLPRVDVPVYIGWGEEDPW 324
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G01470.3 ID=NO06G01470.3|Name=NO06G01470.3|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
AGTAGGCTAGGAAAACATGCCGGCCCCGTCACGACCGAACGCGGGGCTGC
TTTCCATGCTTTTTTTGCTATTGGGCTGCTGCGTGCATGCTTTCCTCATT
CCACCGCCTGCGCTGTCACCATCAACATCTTCACGATGTGGATCACTGAT
AAGAAACAGCAGAGGCCCGAGGGGTGTGCAGCGAGTCGGACCTTTGGTAG
CCTCGGTAATGGACCAAGCCATGCCAGGCCTCCCGAAGAAGACGACGCGC
CCAGACTTGCCCACTACATTTTGGATCTGGAAGCGAAGCCCTGGCGAGGA
GTACAAGATTCGATACCACCAAAGTGGAGAAAAGGGCCCTGCGCTTGTTT
TGATTCATGGATTTGGCGGTAATGCCAACCATTGGGCGCAGAATGTACCT
GATCTCAACCCGCACTACCGCGTTTATGCACTGGATCTGCTAGGCTACGG
ATATAGCGACAAGCCCTCTCCCAAGGGCCGGCCCCCCACTGAGCTGTTTA
ATTTTGAGACCTGGTCGGCCATGACTGAGGCATTCATCACAGATATCATC
CACCCACAATCCCCGCTGGATAAACCGGAGGAGGAAGAGAAAGATGGGGT
CTACTTGGTCTGCAACAGTGTCGGGGGGCTGGTCGGGCTCCAGTTGGCAG
TTGACAGGCCTTCCCTAGTCCGCGGCGTCATGCTCCTCAACATTTCCCTC
CGCATGCTCCACCTCAAAAAACAGCCCTGGTACCTCAAGCCCTTCGTCAA
AGCCCTACAAACCACCCTACGGGAGACCAGACTGGGGCAGCTTTTCTTCG
CACAAGTCGCCACCCCCGAGGGCGTGAAGAATGCTCTCTCGCAAGCCTAC
CACGATAAGGCTAGGGTCACCGACGAGCTGGTCGAAGCAATCCTAAAGCC
AGGGTTGGAGCCCGGGGCGGTGGATGTATTTCTTGATTTTATCTCTTATT
CGGGAGGTCCCCTGCCGGAAGAGCTGTTGCCGAAAGTGAATGTTCCTGTT
TACATCGGCTGGGGGGAAGAGGATCCATGGTATGTTTGAAAGATTAGGAG
GAAGCGAGGAGAGGGAGGAAGCGAGAGAGGGAGAGCACCTTTGGTTTTTC
CAAAGACATCATACAGGAATGATGTGAAAGGAGGCTGCGACGATATTGTT
CACCTCCTCTACCTATTATATTCTTTCTTATATTTTTTGTCACAAATAGG
GAGCCCATTGCCTTGGGTCGTGCCTATGGCGAGTTCCCCTGCGTCCGCGA
GTTCAGGCCCTTCCCTCTTCTTGGCCACTGCCCTATGGGTGAGTGAGAAT
ATATGGAGGTGGCTTTATTTGGTTATTGTGTCTGTGTGGGTTATGATTTT
ACTCGTCCACTCACAAATCACCCTGTATTCACTTTCATACCTCCTCCTTC
CCCATTCCCTCCCACACGGATGGCATACACAGACGAAGGCCCTGACATTA
TCGACCCCTTTATTAGAGAGATGGTTGATACACTCGAGCAGGAACGAAAG
ACTGCTGCACTGAAGTGATTTAAAGATTGTGGGTGGTTTGTGATAATAAA
AGGGGAGGAAAAAAAGCAAAATGCA back to topprotein sequence of NO06G01470.3 >NO06G01470.3-protein ID=NO06G01470.3-protein|Name=NO06G01470.3|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MPAPSRPNAGLLSMLFLLLGCCVHAFLIPPPALSPSTSSRCGSLIRNSRG
PRGVQRVGPLVASVMDQAMPGLPKKTTRPDLPTTFWIWKRSPGEEYKIRY
HQSGEKGPALVLIHGFGGNANHWAQNVPDLNPHYRVYALDLLGYGYSDKP
SPKGRPPTELFNFETWSAMTEAFITDIIHPQSPLDKPEEEEKDGVYLVCN
SVGGLVGLQLAVDRPSLVRGVMLLNISLRMLHLKKQPWYLKPFVKALQTT
LRETRLGQLFFAQVATPEGVKNALSQAYHDKARVTDELVEAILKPGLEPG
AVDVFLDFISYSGGPLPEELLPKVNVPVYIGWGEEDPWYV* back to topmRNA from alignment at chr6:466767..468923- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G01470.3 ID=NO06G01470.3|Name=NO06G01470.3|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp|location=Sequence derived from alignment at chr6:466767..468923- (Nannochloropsis oceanica)
AGTAGGCTAGGAAAACATGCCGGCCCCGTCACGACCGAACGCGGGGCTGC
TTTCCATGCTTTTTTTGCTATTGGGCTGCTGCGTGCATGCTTTCCTCATT
CCACCGCCTGCGCTGTCACCATCAACATCTTCACGATGTGGATCACTGAT
AAGAAACAGCAGAGGCCCGAGGGGTGTGCAGCGAGTCGGACCTTTGGTAG
CCTCGGTAATGGACCAAGGTATATGTCGGGAGTGAAAGAAATCATGTTGT
CATAACATGTTCCGTGTAAAATAGAGTGTCAGGAGGGAGGGGAGGTCGAA
GATGTGGCAACGCGCAGCCCGAGTGTGTGGCATAAGTGCATGTGCTTCTT
TATAAGTGCGTGGATGAAGGTTTCTAGAAATTAACGACTACCATCTAAAT
TCTGCATTTCTCATTCCCCTCCATCAACAAGCCATGCCAGGCCTCCCGAA
GAAGACGACGCGCCCAGACTTGCCCACTACATTTTGGATCTGGAAGCGAA
GCCCTGGCGAGGAGTACAAGATTCGATACCACCAAAGTGGAGAAAAGGGC
CCTGCGCTTGTTTTGATTCATGGTGCGTTGGTTGTGGAAATTGAAGGGAG
AAGACGGGTGGGAGCGGGACAGAAACGGAATGATCGGAGGACTGGAAGGC
AGAGGAGATGCTATTTTGGAATCAAGATGTACACAACATGCACCACATTT
TATGAATCGTCATTTATTCACTCATATACCACTGTATCCTTGACAGGATT
TGGCGGTAATGCCAACCATTGGGCGCAGAATGTACCTGATCTCAACCCGC
ACTACCGCGTTTATGCACTGGATCTGCTAGGTAAGCATGAAGGATAAGAA
CGAGAGGAGAAGGAGAGAGGCAAAGAGCGTCACGTGGGACATGACACAGA
AGATATGGACCGGAAAATGGATCGAGTCGCGTTCCACAGACGGCCGATTA
ATATACTCACTGAGAATTACCTAACCCTCCCTCCCTCCTTCCCTCCCTCC
CTCCTTCCCTCCCTCTCTTCTGCAGGCTACGGATATAGCGACAAGCCCTC
TCCCAAGGGCCGGCCCCCCACTGAGCTGTTTAATTTTGAGACCTGGTCGG
CCATGACTGAGGCATTCATCACAGATATCATCCACCCACAATCCCCGCTG
GATAAACCGGAGGAGGAAGAGAAAGATGGGGTCTACTTGGTCTGCAACAG
TGTCGGGGGGCTGGTCGGGCTCCAGTTGGCAGTTGACAGGCCTTCCCTAG
TCCGCGGCGTCATGCTCCTCAACATTTCCCTCCGCATGCTCCACCTCAAA
AAACAGCCCTGGTACCTCAAGCCCTTCGTCAAAGCCCTACAAACCACCCT
ACGGGAGACCAGACTGGGGCAGCTTTTCTTCGCACAAGTCGCCACCCCCG
AGGGCGTGAAGAATGCTCTCTCGCAAGCCTACCACGATAAGGCTAGGGTC
ACCGACGAGCTGGTCGAAGCAATCCTAAAGCCAGGGTTGGAGCCCGGGGC
GGTGGATGTATTTCTTGATTTTATCTCTTATTCGGGAGGTCCCCTGCCGG
AAGAGCTGTTGCCGAAAGTGAATGTTCCTGTTTACATCGGCTGGGGGGAA
GAGGATCCATGGTATGTTTGAAAGATTAGGAGGAAGCGAGGAGAGGGAGG
AAGCGAGAGAGGGAGAGCACCTTTGGTTTTTCCAAAGACATCATACAGGA
ATGATGTGAAAGGAGGCTGCGACGATATTGTTCACCTCCTCTACCTATTA
TATTCTTTCTTATATTTTTTGTCACAAATAGGGAGCCCATTGCCTTGGGT
CGTGCCTATGGCGAGTTCCCCTGCGTCCGCGAGTTCAGGCCCTTCCCTCT
TCTTGGCCACTGCCCTATGGGTGAGTGAGAATATATGGAGGTGGCTTTAT
TTGGTTATTGTGTCTGTGTGGGTTATGATTTTACTCGTCCACTCACAAAT
CACCCTGTATTCACTTTCATACCTCCTCCTTCCCCATTCCCTCCCACACG
GATGGCATACACAGACGAAGGCCCTGACATTATCGACCCCTTTATTAGAG
AGATGGTTGATACACTCGAGCAGGAACGAAAGACTGCTGCACTGAAGTGA
TTTAAAGATTGTGGGTGGTTTGTGATAATAAAAGGGGAGGAAAAAAAGCA
AAATGCA back to topCoding sequence (CDS) from alignment at chr6:466767..468923- >NO06G01470.3 ID=NO06G01470.3|Name=NO06G01470.3|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at chr6:466767..468923- (Nannochloropsis oceanica)
ATGCCGGCCCCGTCACGACCGAACGCGGGGCTGCTTTCCATGCTTTTTTT
GCTATTGGGCTGCTGCGTGCATGCTTTCCTCATTCCACCGCCTGCGCTGT
CACCATCAACATCTTCACGATGTGGATCACTGATAAGAAACAGCAGAGGC
CCGAGGGGTGTGCAGCGAGTCGGACCTTTGGTAGCCTCGGTAATGGACCA
AGCCATGCCAGGCCTCCCGAAGAAGACGACGCGCCCAGACTTGCCCACTA
CATTTTGGATCTGGAAGCGAAGCCCTGGCGAGGAGTACAAGATTCGATAC
CACCAAAGTGGAGAAAAGGGCCCTGCGCTTGTTTTGATTCATGGATTTGG
CGGTAATGCCAACCATTGGGCGCAGAATGTACCTGATCTCAACCCGCACT
ACCGCGTTTATGCACTGGATCTGCTAGGCTACGGATATAGCGACAAGCCC
TCTCCCAAGGGCCGGCCCCCCACTGAGCTGTTTAATTTTGAGACCTGGTC
GGCCATGACTGAGGCATTCATCACAGATATCATCCACCCACAATCCCCGC
TGGATAAACCGGAGGAGGAAGAGAAAGATGGGGTCTACTTGGTCTGCAAC
AGTGTCGGGGGGCTGGTCGGGCTCCAGTTGGCAGTTGACAGGCCTTCCCT
AGTCCGCGGCGTCATGCTCCTCAACATTTCCCTCCGCATGCTCCACCTCA
AAAAACAGCCCTGGTACCTCAAGCCCTTCGTCAAAGCCCTACAAACCACC
CTACGGGAGACCAGACTGGGGCAGCTTTTCTTCGCACAAGTCGCCACCCC
CGAGGGCGTGAAGAATGCTCTCTCGCAAGCCTACCACGATAAGGCTAGGG
TCACCGACGAGCTGGTCGAAGCAATCCTAAAGCCAGGGTTGGAGCCCGGG
GCGGTGGATGTATTTCTTGATTTTATCTCTTATTCGGGAGGTCCCCTGCC
GGAAGAGCTGTTGCCGAAAGTGAATGTTCCTGTTTACATCGGCTGGGGGG
AAGAGGATCCATGGTATGTTTGA back to top
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