NO06G01460.1, NO06G01460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01460.1
Unique NameNO06G01460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2409
Alignment locationchr6:463702..466380 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:463702..466380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01460.1 vs.
Match: EWM26194.1 (hypothetical protein Naga_100072g8 [Nannochloropsis gaditana])

HSP 1 Score: 613.2 bits (1580), Expect = 9.400e-172
Identity = 354/552 (64.13%), Postives = 427/552 (77.36%), Query Frame = 0 
Query:  131 ENEDDNMILDMDLEHDEEMLQAMRKAIQQQTTAEPQVRRWTLGIGTIGKAMQRQQQHQQLNSMQSSRAGGSLDTAAATAKNMLGAPTLIKQLETVLTDIESLSSSVTASATSPLNGALPLSPKRKVTLFSRKTGEKKRLIEKYKAHLLTLEGERKSLSDKLKKASATGGVALGMLKQEWTTAQLEISRKVRELEKAQDLMGRHEAESTQLRTTVTSLRRQIEELHMNRA-----GPSEQQQQKEGMLSHDGSPAMVSASSTPLICTPTTGTS-------------QEVIAKDGERLAELEIELDLAYGKLEALSMQQNHTKDRSAGLVNRLQGEIREAKAALVARVKKHTEVKERCRQLEEELGASVGQIEAVKHQMELRVGKIEERLKESMREALENERTAKNALFKRQQAEEEMDRLREQYDVLVGQFEAIRSQVELEKMEAKGTVAKYEKELEDVYGKLNAKDEYAGLLCGVRKDMDSEMTDLWTQMDLAEEKRVKLEEAFVTLGNRYRAASARRLFNFMVRQHNNRLRETLIILKKNAKAPPMEADMP 665
            +++ D   L MD EHDEEM++AMR    Q+  A PQV RWT GIGTI K MQRQ QHQQL   Q +    +   AA TAK +LG PTL+KQLE V T+IE +SS+ ++   SP       SP R+ + F  + GEKKRLIEKYKA L  LEGERK  S++++KA  TGGVALGMLK+EWT   ++  RK RELEK Q+L+GRHEAESTQLR TV+ LRRQ+EEL +NRA     G  + +Q++E +LS   SP MVSA+S+P+       TS             +E++  D  RLA+LE+ELDLAYGKLEALS+QQ +++D+S G++ +L+GE++E K AL ARVKKHTE+KERCRQLE ELGASVGQIEAVKHQMELRV K+E+RLKESMREALENERTAKNALFKRQQ EEEM+RLREQ+DVLVGQFEAIRSQVELEK+EA+G V KYEKELE+VYGKLNAKDEYAGLLCGVR+DMDSEMTDLW+Q+D AEEKR K+EEAFV LGN++RAASARRLFNFMV Q   RLRE+LIILKKN+KAP ++AD+P
Sbjct:   47 DSDGDEEALIMDDEHDEEMIEAMRCTALQRKQATPQVSRWTSGIGTIAKDMQRQHQHQQL---QGNLEVSATSVAATTAKILLGPPTLMKQLEAVFTEIEHISSTRSSHTVSPKGKTGLASPLRQSSWFGTRKGEKKRLIEKYKAQLAALEGERKEASEEMRKAIQTGGVALGMLKEEWTRTDIDTLRKARELEKVQELLGRHEAESTQLRITVSGLRRQVEEL-VNRAQSVPRGSQDDEQKEEELLSD--SPLMVSATSSPIQECSVRETSAKTSSPPASSEMGKELVVNDA-RLAQLEMELDLAYGKLEALSLQQCYSQDKSTGVLQQLRGELKETKLALAARVKKHTEMKERCRQLEGELGASVGQIEAVKHQMELRVAKMEDRLKESMREALENERTAKNALFKRQQVEEEMERLREQHDVLVGQFEAIRSQVELEKLEAQGVVTKYEKELEEVYGKLNAKDEYAGLLCGVRQDMDSEMTDLWSQVDAAEEKRAKVEEAFVALGNKFRAASARRLFNFMVAQQRCRLRESLIILKKNSKAPLLQADVP 591
The following BLAST results are available for this feature:
BLAST of NO06G01460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26194.19.400e-17264.13hypothetical protein Naga_100072g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01460NO06G01460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01460.1NO06G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01460.1.cds1NO06G01460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01460.1.cds2NO06G01460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01460.1 ID=NO06G01460.1|Name=NO06G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2409bp
AACCACAGGGGGCGCCCCCCTTACATACGCCGCTGAGACTTCAAGGGCAG
AAGTCATTCTTCAAAGCCGGAAGTCCCTCCCAACCAAATGGCCATGCCGG
AGGAGCTTACCAACACAGGTAGCATGAAAGACACAGGGGCTGAGCTAAAC
ATGCTGATGCAGCAGCTGAAAAATAATGTGTTGAAAGACAAGCATACTTT
GACTGGGGCGGGCCGACCCGAGGAAGATCTGGCCAGGAAAATTATTCAGA
AGAACGCTCTTGTGATCGGTAAGGACGAAGAGGGGGAAGACTCCGCCGAC
GCTGCTTACTTTTCTTCCGAGACAGGCAGTCAGATGGGGGGATATGATTC
TGATTACTCCGAGGTGGACAGCAGCATGCACTTCGACAATGGAGAGGAGG
GTGAGGGAGCGGAAGTCATTGAAAAGGATCAAGTGGAGCGCTTGGTCGGG
AATGGGAAAGAGGGGGAGAGCGGGATGGAGAACGAAGACGATAACATGAT
TTTGGACATGGATCTGGAGCACGACGAGGAGATGCTGCAAGCTATGCGCA
AAGCCATCCAACAGCAAACGACGGCTGAGCCTCAAGTACGCCGGTGGACA
CTAGGGATCGGCACAATTGGGAAGGCGATGCAACGGCAACAGCAGCACCA
GCAGCTTAACTCGATGCAAAGCTCGCGTGCGGGTGGAAGCTTGGACACTG
CTGCTGCGACGGCAAAGAACATGCTTGGGGCCCCTACCCTGATAAAGCAG
CTTGAGACGGTCTTGACAGACATTGAGAGCTTATCCAGTAGTGTTACTGC
TTCCGCGACATCTCCGCTAAATGGGGCCCTCCCTCTGAGCCCGAAGCGGA
AAGTGACGTTGTTTAGTCGGAAGACGGGAGAGAAGAAGCGCTTAATCGAA
AAATACAAGGCGCATCTCCTGACGTTAGAAGGAGAGAGAAAGTCTTTGTC
AGATAAGCTAAAAAAAGCATCGGCGACAGGGGGGGTGGCCCTGGGGATGC
TCAAACAAGAGTGGACGACGGCGCAGCTGGAGATCTCGCGGAAGGTGCGG
GAGTTGGAGAAGGCCCAGGATTTAATGGGCCGACATGAAGCAGAGAGCAC
CCAGCTCCGGACCACCGTCACGAGCCTCCGTCGTCAAATCGAAGAATTGC
ACATGAACCGCGCAGGTCCTTCCGAGCAGCAGCAGCAGAAGGAGGGAATG
TTGTCCCATGACGGATCTCCTGCTATGGTGTCGGCATCGAGCACCCCTCT
AATCTGCACCCCTACCACTGGTACAAGTCAAGAGGTAATTGCTAAGGATG
GGGAAAGGCTAGCAGAACTTGAAATAGAGCTAGACCTGGCCTATGGGAAG
TTGGAAGCATTAAGCATGCAGCAAAACCATACCAAGGACAGAAGCGCTGG
GTTGGTAAATCGCCTGCAGGGGGAAATAAGAGAGGCTAAAGCGGCCTTGG
TAGCACGGGTTAAGAAGCACACGGAGGTTAAGGAGAGATGTCGGCAGCTA
GAGGAGGAATTGGGTGCATCCGTGGGACAGATCGAGGCGGTAAAGCATCA
GATGGAGCTGAGGGTGGGGAAGATAGAGGAGAGATTGAAAGAGAGTATGA
GGGAGGCCTTGGAGAATGAACGGACAGCAAAAAATGCCTTGTTTAAACGA
CAACAGGCGGAGGAGGAAATGGACCGTTTGAGAGAGCAGTACGACGTGCT
TGTGGGTCAGTTTGAGGCGATTCGATCGCAGGTGGAGCTGGAGAAGATGG
AGGCAAAAGGGACAGTTGCAAAGTACGAGAAGGAGCTAGAGGACGTCTAC
GGGAAGTTGAATGCCAAGGACGAGTATGCAGGATTATTGTGTGGGGTGAG
AAAAGATATGGATTCCGAAATGACGGACTTGTGGACCCAGATGGACCTGG
CAGAGGAGAAGAGGGTGAAATTGGAGGAGGCATTTGTGACGTTGGGAAAT
CGGTATCGTGCGGCGTCGGCAAGACGATTATTTAATTTCATGGTGAGACA
GCATAACAATAGGTTGAGAGAGACGTTAATTATTTTGAAGAAAAATGCCA
AGGCGCCACCGATGGAGGCAGATATGCCGTAGGTGGGTAGGAGTGCAAAA
AGGGAATAGTGGGGAGAGAGAATGATAAAAAACGGGGAAAAAATGCTAAT
ATATTTATTTGGGATTGAGATCAAAGTGTAGAATTAGATATCTCCTTATG
ATTTGTATCAGATCTTAGAATTGAATCTTTGACATGAAGAATTAAGGGAA
AATAGCAGGACACGTGTCTGGTAGAAAAGGGGAGAGTGGCCGGCGTATGC
GAAGAGCAAGAGGAAAGGGGCTCGTGTGCGCTTTTGTACAAACATGATTT
TACACCTTTAAAAGGAAGGCACATTTAAGCAAGAAAGAAGGAAGATACAA
ATGACGCCT
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protein sequence of NO06G01460.1

>NO06G01460.1-protein ID=NO06G01460.1-protein|Name=NO06G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MAMPEELTNTGSMKDTGAELNMLMQQLKNNVLKDKHTLTGAGRPEEDLAR
KIIQKNALVIGKDEEGEDSADAAYFSSETGSQMGGYDSDYSEVDSSMHFD
NGEEGEGAEVIEKDQVERLVGNGKEGESGMENEDDNMILDMDLEHDEEML
QAMRKAIQQQTTAEPQVRRWTLGIGTIGKAMQRQQQHQQLNSMQSSRAGG
SLDTAAATAKNMLGAPTLIKQLETVLTDIESLSSSVTASATSPLNGALPL
SPKRKVTLFSRKTGEKKRLIEKYKAHLLTLEGERKSLSDKLKKASATGGV
ALGMLKQEWTTAQLEISRKVRELEKAQDLMGRHEAESTQLRTTVTSLRRQ
IEELHMNRAGPSEQQQQKEGMLSHDGSPAMVSASSTPLICTPTTGTSQEV
IAKDGERLAELEIELDLAYGKLEALSMQQNHTKDRSAGLVNRLQGEIREA
KAALVARVKKHTEVKERCRQLEEELGASVGQIEAVKHQMELRVGKIEERL
KESMREALENERTAKNALFKRQQAEEEMDRLREQYDVLVGQFEAIRSQVE
LEKMEAKGTVAKYEKELEDVYGKLNAKDEYAGLLCGVRKDMDSEMTDLWT
QMDLAEEKRVKLEEAFVTLGNRYRAASARRLFNFMVRQHNNRLRETLIIL
KKNAKAPPMEADMP*
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mRNA from alignment at chr6:463702..466380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01460.1 ID=NO06G01460.1|Name=NO06G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2679bp|location=Sequence derived from alignment at chr6:463702..466380- (Nannochloropsis oceanica)
AACCACAGGGGGCGCCCCCCTTACATACGCCGCTGAGACTTCAAGGGCAG
AAGTCATTCTTCAAAGCCGGAAGTCCCTCCCAACCAAATGGCCATGCCGG
AGGAGCTTACCAACACAGGTAGCATGAAAGACACAGGGGCTGAGCTAAAC
ATGCTGATGCAGCAGCTGAAAAATAATGTGTTGAAAGACAAGCATACTTT
GACTGGGGCGGGCCGGTACGTGTGTGTGGGGGCATTGTGAGGGGAGGGAT
GAAAGGGCGGCGAAACCCCTCCTCACACAGTGCAAGCCATTGGACAATAG
GTATACGATATGCGGATTTCGTCTTTTTATACGAAAGAACACCAGTAAAG
GTCATGTATATGGCGAAAATCCCCCGCCTGCCTCATTTAAAGTCGAATGA
ACTATACCAAAGCTCACTCGCTGCCATCCTCTACTCACTAACTCCTCCCC
CCTTGATTCCGCATCTGCCCTCGAATTTAAATCAGACCCGAGGAAGATCT
GGCCAGGAAAATTATTCAGAAGAACGCTCTTGTGATCGGTAAGGACGAAG
AGGGGGAAGACTCCGCCGACGCTGCTTACTTTTCTTCCGAGACAGGCAGT
CAGATGGGGGGATATGATTCTGATTACTCCGAGGTGGACAGCAGCATGCA
CTTCGACAATGGAGAGGAGGGTGAGGGAGCGGAAGTCATTGAAAAGGATC
AAGTGGAGCGCTTGGTCGGGAATGGGAAAGAGGGGGAGAGCGGGATGGAG
AACGAAGACGATAACATGATTTTGGACATGGATCTGGAGCACGACGAGGA
GATGCTGCAAGCTATGCGCAAAGCCATCCAACAGCAAACGACGGCTGAGC
CTCAAGTACGCCGGTGGACACTAGGGATCGGCACAATTGGGAAGGCGATG
CAACGGCAACAGCAGCACCAGCAGCTTAACTCGATGCAAAGCTCGCGTGC
GGGTGGAAGCTTGGACACTGCTGCTGCGACGGCAAAGAACATGCTTGGGG
CCCCTACCCTGATAAAGCAGCTTGAGACGGTCTTGACAGACATTGAGAGC
TTATCCAGTAGTGTTACTGCTTCCGCGACATCTCCGCTAAATGGGGCCCT
CCCTCTGAGCCCGAAGCGGAAAGTGACGTTGTTTAGTCGGAAGACGGGAG
AGAAGAAGCGCTTAATCGAAAAATACAAGGCGCATCTCCTGACGTTAGAA
GGAGAGAGAAAGTCTTTGTCAGATAAGCTAAAAAAAGCATCGGCGACAGG
GGGGGTGGCCCTGGGGATGCTCAAACAAGAGTGGACGACGGCGCAGCTGG
AGATCTCGCGGAAGGTGCGGGAGTTGGAGAAGGCCCAGGATTTAATGGGC
CGACATGAAGCAGAGAGCACCCAGCTCCGGACCACCGTCACGAGCCTCCG
TCGTCAAATCGAAGAATTGCACATGAACCGCGCAGGTCCTTCCGAGCAGC
AGCAGCAGAAGGAGGGAATGTTGTCCCATGACGGATCTCCTGCTATGGTG
TCGGCATCGAGCACCCCTCTAATCTGCACCCCTACCACTGGTACAAGTCA
AGAGGTAATTGCTAAGGATGGGGAAAGGCTAGCAGAACTTGAAATAGAGC
TAGACCTGGCCTATGGGAAGTTGGAAGCATTAAGCATGCAGCAAAACCAT
ACCAAGGACAGAAGCGCTGGGTTGGTAAATCGCCTGCAGGGGGAAATAAG
AGAGGCTAAAGCGGCCTTGGTAGCACGGGTTAAGAAGCACACGGAGGTTA
AGGAGAGATGTCGGCAGCTAGAGGAGGAATTGGGTGCATCCGTGGGACAG
ATCGAGGCGGTAAAGCATCAGATGGAGCTGAGGGTGGGGAAGATAGAGGA
GAGATTGAAAGAGAGTATGAGGGAGGCCTTGGAGAATGAACGGACAGCAA
AAAATGCCTTGTTTAAACGACAACAGGCGGAGGAGGAAATGGACCGTTTG
AGAGAGCAGTACGACGTGCTTGTGGGTCAGTTTGAGGCGATTCGATCGCA
GGTGGAGCTGGAGAAGATGGAGGCAAAAGGGACAGTTGCAAAGTACGAGA
AGGAGCTAGAGGACGTCTACGGGAAGTTGAATGCCAAGGACGAGTATGCA
GGATTATTGTGTGGGGTGAGAAAAGATATGGATTCCGAAATGACGGACTT
GTGGACCCAGATGGACCTGGCAGAGGAGAAGAGGGTGAAATTGGAGGAGG
CATTTGTGACGTTGGGAAATCGGTATCGTGCGGCGTCGGCAAGACGATTA
TTTAATTTCATGGTGAGACAGCATAACAATAGGTTGAGAGAGACGTTAAT
TATTTTGAAGAAAAATGCCAAGGCGCCACCGATGGAGGCAGATATGCCGT
AGGTGGGTAGGAGTGCAAAAAGGGAATAGTGGGGAGAGAGAATGATAAAA
AACGGGGAAAAAATGCTAATATATTTATTTGGGATTGAGATCAAAGTGTA
GAATTAGATATCTCCTTATGATTTGTATCAGATCTTAGAATTGAATCTTT
GACATGAAGAATTAAGGGAAAATAGCAGGACACGTGTCTGGTAGAAAAGG
GGAGAGTGGCCGGCGTATGCGAAGAGCAAGAGGAAAGGGGCTCGTGTGCG
CTTTTGTACAAACATGATTTTACACCTTTAAAAGGAAGGCACATTTAAGC
AAGAAAGAAGGAAGATACAAATGACGCCT
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Coding sequence (CDS) from alignment at chr6:463702..466380-

>NO06G01460.1 ID=NO06G01460.1|Name=NO06G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=1995bp|location=Sequence derived from alignment at chr6:463702..466380- (Nannochloropsis oceanica)
ATGGCCATGCCGGAGGAGCTTACCAACACAGGTAGCATGAAAGACACAGG
GGCTGAGCTAAACATGCTGATGCAGCAGCTGAAAAATAATGTGTTGAAAG
ACAAGCATACTTTGACTGGGGCGGGCCGACCCGAGGAAGATCTGGCCAGG
AAAATTATTCAGAAGAACGCTCTTGTGATCGGTAAGGACGAAGAGGGGGA
AGACTCCGCCGACGCTGCTTACTTTTCTTCCGAGACAGGCAGTCAGATGG
GGGGATATGATTCTGATTACTCCGAGGTGGACAGCAGCATGCACTTCGAC
AATGGAGAGGAGGGTGAGGGAGCGGAAGTCATTGAAAAGGATCAAGTGGA
GCGCTTGGTCGGGAATGGGAAAGAGGGGGAGAGCGGGATGGAGAACGAAG
ACGATAACATGATTTTGGACATGGATCTGGAGCACGACGAGGAGATGCTG
CAAGCTATGCGCAAAGCCATCCAACAGCAAACGACGGCTGAGCCTCAAGT
ACGCCGGTGGACACTAGGGATCGGCACAATTGGGAAGGCGATGCAACGGC
AACAGCAGCACCAGCAGCTTAACTCGATGCAAAGCTCGCGTGCGGGTGGA
AGCTTGGACACTGCTGCTGCGACGGCAAAGAACATGCTTGGGGCCCCTAC
CCTGATAAAGCAGCTTGAGACGGTCTTGACAGACATTGAGAGCTTATCCA
GTAGTGTTACTGCTTCCGCGACATCTCCGCTAAATGGGGCCCTCCCTCTG
AGCCCGAAGCGGAAAGTGACGTTGTTTAGTCGGAAGACGGGAGAGAAGAA
GCGCTTAATCGAAAAATACAAGGCGCATCTCCTGACGTTAGAAGGAGAGA
GAAAGTCTTTGTCAGATAAGCTAAAAAAAGCATCGGCGACAGGGGGGGTG
GCCCTGGGGATGCTCAAACAAGAGTGGACGACGGCGCAGCTGGAGATCTC
GCGGAAGGTGCGGGAGTTGGAGAAGGCCCAGGATTTAATGGGCCGACATG
AAGCAGAGAGCACCCAGCTCCGGACCACCGTCACGAGCCTCCGTCGTCAA
ATCGAAGAATTGCACATGAACCGCGCAGGTCCTTCCGAGCAGCAGCAGCA
GAAGGAGGGAATGTTGTCCCATGACGGATCTCCTGCTATGGTGTCGGCAT
CGAGCACCCCTCTAATCTGCACCCCTACCACTGGTACAAGTCAAGAGGTA
ATTGCTAAGGATGGGGAAAGGCTAGCAGAACTTGAAATAGAGCTAGACCT
GGCCTATGGGAAGTTGGAAGCATTAAGCATGCAGCAAAACCATACCAAGG
ACAGAAGCGCTGGGTTGGTAAATCGCCTGCAGGGGGAAATAAGAGAGGCT
AAAGCGGCCTTGGTAGCACGGGTTAAGAAGCACACGGAGGTTAAGGAGAG
ATGTCGGCAGCTAGAGGAGGAATTGGGTGCATCCGTGGGACAGATCGAGG
CGGTAAAGCATCAGATGGAGCTGAGGGTGGGGAAGATAGAGGAGAGATTG
AAAGAGAGTATGAGGGAGGCCTTGGAGAATGAACGGACAGCAAAAAATGC
CTTGTTTAAACGACAACAGGCGGAGGAGGAAATGGACCGTTTGAGAGAGC
AGTACGACGTGCTTGTGGGTCAGTTTGAGGCGATTCGATCGCAGGTGGAG
CTGGAGAAGATGGAGGCAAAAGGGACAGTTGCAAAGTACGAGAAGGAGCT
AGAGGACGTCTACGGGAAGTTGAATGCCAAGGACGAGTATGCAGGATTAT
TGTGTGGGGTGAGAAAAGATATGGATTCCGAAATGACGGACTTGTGGACC
CAGATGGACCTGGCAGAGGAGAAGAGGGTGAAATTGGAGGAGGCATTTGT
GACGTTGGGAAATCGGTATCGTGCGGCGTCGGCAAGACGATTATTTAATT
TCATGGTGAGACAGCATAACAATAGGTTGAGAGAGACGTTAATTATTTTG
AAGAAAAATGCCAAGGCGCCACCGATGGAGGCAGATATGCCGTAG
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Synonyms
Publications