NO06G00440.1, NO06G00440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00440.1
Unique NameNO06G00440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr6:189044..190207 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:189044..190207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G00440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00440NO06G00440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00440.1NO06G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00440.1.cds1NO06G00440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00440.1 ID=NO06G00440.1|Name=NO06G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGACTAAGGGCAGCTGCAGCAGCAGCCTTATAGACGGCGTGCCCATCGC
CCCTCTCATGCCCTCATCTGAGAATCCTCCCGTCCTGTCTCCTCCTGCTT
GTGCCTCCTCCCTCCCTCTCTCCGATCAATCACACTCCGTGCGGCACTCT
ACCACCGCTCCTCTCCCCCCTCCTCCCTCCCTCCCTCTTGCCCAAACCCC
CCCCCTGAGCCAGACTACCCGACCAGGCCCTGCCTCTCCCCCTCCCTCCC
ATCCCTCTCTCGACTCCTCTTTCCCCTCCTCCTCCTCCCTCACCGGGTTC
GATTCGCGCCACAATGCCTCCTCCCTCCCCCTCGACCTCGACGTTCTCTT
TGCCTCGGGTTTTCACGACAGCACCCACCACCTCTCCCTCCCTCTATCCT
CCTCCTCTTCCTCCCTCATCCTCCCTCATGCTTTGCCGCAACAGCAGAGA
GGGAAGGAAGGAGTGAAGGAAGGGGTGAAGGAGGGGGTGAAGGAAGGGGG
AGCCTCCCTACTCTTTCCTCTCACCCCTGTTTCGGCTGCTACCACTTTGC
CTGAGGGTGTGTCTTCTCTTTCTTCTTTTGAGGGAGGGGATGGAGGAGGG
AGGGAGGGGAGGAGGGAGGGAGGGGGCATTGTGGGAGGGCAGACTTTCTT
CTTCAACCATATAGCCATTGGTGGAAGGGCAGGAGGAGGAGACTTATTGT
TGCCACAGGCCACTCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGACGTCC
TTTAATCCCTCCCTCCCTCCCTTCCTTGCTCCGGCCAAGCAGCAGCTAAT
TACATGTCGTAAACGCGATCGAGGCAGCGGAGACGGGGAACATGATCGTT
CCTTTTCTCCTTCCTCCATCCTTCCTTCGTCCTCCTCCACCACCACCTAT
CCCCTCTTTGGCTCTTACGGCAGCCTTGATCCTACCCATGTTCTTGCTTC
CTCCTCCACGTCCTCCTTCCCTTCCTCTCTCCCGCTCTCCAACCTCCAGG
CGCACTGCTTCTCGTCCTCGTCATACCTCTCTTCTGACCATTTCCACGGT
TCACCAATTTTGGGGGGGGGGACGACCGAGGGGAAGAAGGAGGGAGGGGG
GGAGAAGGAGAAAACAGTATTGGAAGTGGACAAGGGAAGGAAAGCGAAGA
AGCGTCGAGTTTGA
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protein sequence of NO06G00440.1

>NO06G00440.1-protein ID=NO06G00440.1-protein|Name=NO06G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MTKGSCSSSLIDGVPIAPLMPSSENPPVLSPPACASSLPLSDQSHSVRHS
TTAPLPPPPSLPLAQTPPLSQTTRPGPASPPPSHPSLDSSFPSSSSLTGF
DSRHNASSLPLDLDVLFASGFHDSTHHLSLPLSSSSSSLILPHALPQQQR
GKEGVKEGVKEGVKEGGASLLFPLTPVSAATTLPEGVSSLSSFEGGDGGG
REGRREGGGIVGGQTFFFNHIAIGGRAGGGDLLLPQATQQQQQQQQQATS
FNPSLPPFLAPAKQQLITCRKRDRGSGDGEHDRSFSPSSILPSSSSTTTY
PLFGSYGSLDPTHVLASSSTSSFPSSLPLSNLQAHCFSSSSYLSSDHFHG
SPILGGGTTEGKKEGGGEKEKTVLEVDKGRKAKKRRV*
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mRNA from alignment at chr6:189044..190207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00440.1 ID=NO06G00440.1|Name=NO06G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp|location=Sequence derived from alignment at chr6:189044..190207- (Nannochloropsis oceanica)
ATGACTAAGGGCAGCTGCAGCAGCAGCCTTATAGACGGCGTGCCCATCGC
CCCTCTCATGCCCTCATCTGAGAATCCTCCCGTCCTGTCTCCTCCTGCTT
GTGCCTCCTCCCTCCCTCTCTCCGATCAATCACACTCCGTGCGGCACTCT
ACCACCGCTCCTCTCCCCCCTCCTCCCTCCCTCCCTCTTGCCCAAACCCC
CCCCCTGAGCCAGACTACCCGACCAGGCCCTGCCTCTCCCCCTCCCTCCC
ATCCCTCTCTCGACTCCTCTTTCCCCTCCTCCTCCTCCCTCACCGGGTTC
GATTCGCGCCACAATGCCTCCTCCCTCCCCCTCGACCTCGACGTTCTCTT
TGCCTCGGGTTTTCACGACAGCACCCACCACCTCTCCCTCCCTCTATCCT
CCTCCTCTTCCTCCCTCATCCTCCCTCATGCTTTGCCGCAACAGCAGAGA
GGGAAGGAAGGAGTGAAGGAAGGGGTGAAGGAGGGGGTGAAGGAAGGGGG
AGCCTCCCTACTCTTTCCTCTCACCCCTGTTTCGGCTGCTACCACTTTGC
CTGAGGGTGTGTCTTCTCTTTCTTCTTTTGAGGGAGGGGATGGAGGAGGG
AGGGAGGGGAGGAGGGAGGGAGGGGGCATTGTGGGAGGGCAGACTTTCTT
CTTCAACCATATAGCCATTGGTGGAAGGGCAGGAGGAGGAGACTTATTGT
TGCCACAGGCCACTCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGACGTCC
TTTAATCCCTCCCTCCCTCCCTTCCTTGCTCCGGCCAAGCAGCAGCTAAT
TACATGTCGTAAACGCGATCGAGGCAGCGGAGACGGGGAACATGATCGTT
CCTTTTCTCCTTCCTCCATCCTTCCTTCGTCCTCCTCCACCACCACCTAT
CCCCTCTTTGGCTCTTACGGCAGCCTTGATCCTACCCATGTTCTTGCTTC
CTCCTCCACGTCCTCCTTCCCTTCCTCTCTCCCGCTCTCCAACCTCCAGG
CGCACTGCTTCTCGTCCTCGTCATACCTCTCTTCTGACCATTTCCACGGT
TCACCAATTTTGGGGGGGGGGACGACCGAGGGGAAGAAGGAGGGAGGGGG
GGAGAAGGAGAAAACAGTATTGGAAGTGGACAAGGGAAGGAAAGCGAAGA
AGCGTCGAGTTTGA
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Coding sequence (CDS) from alignment at chr6:189044..190207-

>NO06G00440.1 ID=NO06G00440.1|Name=NO06G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr6:189044..190207- (Nannochloropsis oceanica)
ATGACTAAGGGCAGCTGCAGCAGCAGCCTTATAGACGGCGTGCCCATCGC
CCCTCTCATGCCCTCATCTGAGAATCCTCCCGTCCTGTCTCCTCCTGCTT
GTGCCTCCTCCCTCCCTCTCTCCGATCAATCACACTCCGTGCGGCACTCT
ACCACCGCTCCTCTCCCCCCTCCTCCCTCCCTCCCTCTTGCCCAAACCCC
CCCCCTGAGCCAGACTACCCGACCAGGCCCTGCCTCTCCCCCTCCCTCCC
ATCCCTCTCTCGACTCCTCTTTCCCCTCCTCCTCCTCCCTCACCGGGTTC
GATTCGCGCCACAATGCCTCCTCCCTCCCCCTCGACCTCGACGTTCTCTT
TGCCTCGGGTTTTCACGACAGCACCCACCACCTCTCCCTCCCTCTATCCT
CCTCCTCTTCCTCCCTCATCCTCCCTCATGCTTTGCCGCAACAGCAGAGA
GGGAAGGAAGGAGTGAAGGAAGGGGTGAAGGAGGGGGTGAAGGAAGGGGG
AGCCTCCCTACTCTTTCCTCTCACCCCTGTTTCGGCTGCTACCACTTTGC
CTGAGGGTGTGTCTTCTCTTTCTTCTTTTGAGGGAGGGGATGGAGGAGGG
AGGGAGGGGAGGAGGGAGGGAGGGGGCATTGTGGGAGGGCAGACTTTCTT
CTTCAACCATATAGCCATTGGTGGAAGGGCAGGAGGAGGAGACTTATTGT
TGCCACAGGCCACTCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGACGTCC
TTTAATCCCTCCCTCCCTCCCTTCCTTGCTCCGGCCAAGCAGCAGCTAAT
TACATGTCGTAAACGCGATCGAGGCAGCGGAGACGGGGAACATGATCGTT
CCTTTTCTCCTTCCTCCATCCTTCCTTCGTCCTCCTCCACCACCACCTAT
CCCCTCTTTGGCTCTTACGGCAGCCTTGATCCTACCCATGTTCTTGCTTC
CTCCTCCACGTCCTCCTTCCCTTCCTCTCTCCCGCTCTCCAACCTCCAGG
CGCACTGCTTCTCGTCCTCGTCATACCTCTCTTCTGACCATTTCCACGGT
TCACCAATTTTGGGGGGGGGGACGACCGAGGGGAAGAAGGAGGGAGGGGG
GGAGAAGGAGAAAACAGTATTGGAAGTGGACAAGGGAAGGAAAGCGAAGA
AGCGTCGAGTTTGA
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Synonyms
Publications