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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1404751..1408520 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G05290.1 vs.
Match: EWM27866.1 (hypothetical protein Naga_100094g3 [Nannochloropsis gaditana]) HSP 1 Score: 446.4 bits (1147), Expect = 1.400e-121 Identity = 314/597 (52.60%), Postives = 390/597 (65.33%), Query Frame = 0
Query: 11 PVEFSSPPRRRIKRSHRSWVTGRVVLGIITFSIIGNMTRLELEKYITQLDARQGNIESSTYAAILANLLGCFIMGFMYESRAFLEKKLHGILSFPDVPDAPSLYVAITTWLCGSITTYSSWNTVVATRVVEDSFCYGLFTAMTGAATSYLALLMGMDLATGFKRIQILEEPPKERQNPLSLPPSLPPSPTLGEDGLPPPLPPPPPPSYLRLDGPPPGPLAEEEEVGDLVEREEEAAEEMEEGG----GGGGGGGGGGGGGGGGGGGGGGSWLTGWFGDGEGWGRRKGSEEEGEEEEEEEE----EEEGRREGSTRFGPLAEELAGAGAVLVERHSISSSASLPSSLPSSLPSSFPAAGESPTPPGGDRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGIELSMKRPGVSPPYTGEDEEIEYSVYGFAKPNQRDAFILSELALFFVGAAALLGVAGVMIRSTETSAVAPVWLSCLFAPLGVAIRYLLAIGMARHQALRPVLLRFPLQTFAANSLGSLLSALLAVLVPLARTSGRLETAHVMKAISMGLCGGLSTYSTFALELHKLPTDCAWVYALTTFGTTQLAAQLILATHKWGLW 600
PV ++ +RI R+HRSWVT RVV GII FS+IGN+ R+ELE+YI QLDARQGNI+SS Y +ILANLLGCFIMG +YE R FLE+ LHGILSFP +PDA SLYVAITTW+CGSITTYS WN+VVA R+V DSF YG+F+AMTGAAT+YLALL GMD+ +GF R+Q++E+ K+ PPSLP P P PS L P GPL EEEE GDL+ER+EEAA E EE G G G G GG +WLT W G R+G E+ G EEEEEEE EE + +G FGPL EELA +GA L+E H S P P S P++ ++ S + P G +GGG GG G GG GI++ + PG +P T +D+++EYS+Y F KPNQRDAFIL E++ + GAA LL +A + I++ E+S + P WLSCLFAPLG A+RY+LA+ MA+H + +L FPLQTF AN LG+ LSA ++P+ + G TAH+MKA+ +G G LSTYSTFALELHKLPT AW YAL TF TTQ AQLI+A+H+WG W
Sbjct: 67 PVTPAAASPQRIPRTHRSWVTVRVVSGIIMFSMIGNIIRIELERYIIQLDARQGNIKSSMYPSILANLLGCFIMGLLYECRGFLERHLHGILSFPSMPDASSLYVAITTWMCGSITTYSGWNSVVAHRMVYDSFTYGIFSAMTGAATAYLALLHGMDVGSGFTRVQLVEDTDKKAS-----PPSLPSPPADSSSLSISVASPRQSPS--GLTHLPSGPLPEEEEEGDLLERDEEAAAEEEESRRRMWGARRGKRKERRSEEGRGTSGGMTWLTAWLG------LRRGKEDGGSEEEEEEEGGGGEERRKEDGKVLFGPLPEELAASGAALMEPHRYIS----PERKPVSRPTNSASSASSYSRPLGQQGGGREGGSEAGREGG---------------GIQMQAQPPGFNP--TEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLGATLSAFFDTIIPVLKDRGDGRTAHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASHRWGWW 629
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G05290.1 ID=NO05G05290.1|Name=NO05G05290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1982bp ATGGCAACCACTTCCACATTGACCTTGGTGCCGGTGGAGTTCTCGTCGCC TCCACGGCGGCGGATCAAACGGTCCCACCGCTCCTGGGTCACGGGTCGCG TAGTGCTCGGTATCATCACCTTTTCCATCATCGGGAATATGACGAGGCTG GAATTGGAAAAGTATATCACGCAACTTGATGCCCGGCAAGGCAACATCGA GAGCTCCACGTACGCCGCTATCCTCGCCAACCTCCTAGGATGTTTCATCA TGGGATTTATGTACGAGAGTAGGGCGTTCCTCGAAAAGAAGCTACACGGC ATCCTCTCCTTTCCCGATGTGCCGGACGCCCCGTCCCTGTACGTCGCAAT CACCACCTGGCTCTGTGGCAGCATCACGACCTACAGCTCGTGGAACACAG TGGTGGCTACGCGGGTCGTGGAAGACTCTTTTTGCTATGGCCTCTTCACT GCCATGACCGGTGCCGCCACCTCCTACCTCGCGTTGCTCATGGGCATGGA TCTCGCTACTGGCTTCAAGCGCATCCAAATTTTGGAGGAACCGCCAAAGG AACGACAAAACCCTCTCTCCCTCCCTCCCTCCCTTCCTCCCTCCCCCACC TTGGGCGAGGATGGCCTGCCTCCTCCTCTTCCTCCTCCTCCCCCTCCTTC CTACCTGCGTCTCGACGGTCCGCCGCCGGGGCCTCTGGCGGAGGAAGAGG AGGTGGGCGACTTGGTGGAGAGGGAGGAGGAGGCAGCGGAGGAGATGGAG GAGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGGGGAGGAGGAGGGGG AGGAGGAGGAGGAGGAGGAGGAGGGTCATGGCTGACAGGATGGTTTGGGG ATGGAGAAGGATGGGGTCGCAGGAAGGGGAGCGAGGAGGAGGGGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAAGAAGGGAGGAGGGAGGGATCTACGAG GTTCGGTCCTTTGGCAGAGGAGCTGGCAGGAGCGGGCGCAGTACTCGTCG AGCGGCACAGCATATCTTCTTCGGCCTCCCTCCCTTCCTCCCTCCCTTCC TCCCTCCCTTCGTCCTTCCCAGCGGCTGGGGAATCGCCTACTCCTCCGGG AGGAGATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGA GGGATCGAGCTATCGATGAAACGCCCTGGGGTGTCGCCTCCATACACAGG CGAGGACGAGGAGATCGAGTATTCTGTGTACGGTTTCGCGAAGCCCAACC AGCGAGACGCCTTCATCCTCAGCGAGCTCGCGCTCTTTTTTGTGGGGGCA GCTGCCCTTCTGGGGGTGGCAGGGGTGATGATAAGAAGCACGGAGACCTC GGCGGTGGCACCTGTGTGGCTCTCGTGCCTCTTCGCTCCCCTCGGCGTGG CCATCCGCTATCTGCTGGCTATCGGCATGGCCCGACACCAGGCCCTCCGG CCAGTCCTTCTCCGCTTCCCCCTCCAGACATTCGCCGCCAACTCTCTGGG TTCCCTCCTCTCTGCCCTCCTGGCCGTGCTCGTGCCCCTGGCCAGGACAA GTGGACGTCTCGAGACGGCCCATGTGATGAAGGCGATCAGCATGGGCCTG TGCGGGGGACTTAGTACCTACTCCACGTTTGCGCTGGAGCTGCATAAGCT TCCGACAGACTGCGCCTGGGTTTATGCCCTAACCACCTTCGGCACCACGC AGCTTGCGGCCCAGCTCATTTTGGCGACGCACAAGTGGGGCCTGTGGTGA GACTGTAGAAAGAAGGGAGGGGGAGGGAGGAAAATGAGGGGGGGGATAGG AAGGTGGGGAGGAGAAGGAGAGGGAAGAGGAGGAGGAGGGGAGAGGGGGA GGAGGAAAGGGAGAAGAAGAAGGAGGAGGAGGGGGAGGAGGAAGGGGAGG AAGAGAGGGAGGAAAGGAAAAGAGGAGGAGGA back to topprotein sequence of NO05G05290.1 >NO05G05290.1-protein ID=NO05G05290.1-protein|Name=NO05G05290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp MATTSTLTLVPVEFSSPPRRRIKRSHRSWVTGRVVLGIITFSIIGNMTRL ELEKYITQLDARQGNIESSTYAAILANLLGCFIMGFMYESRAFLEKKLHG ILSFPDVPDAPSLYVAITTWLCGSITTYSSWNTVVATRVVEDSFCYGLFT AMTGAATSYLALLMGMDLATGFKRIQILEEPPKERQNPLSLPPSLPPSPT LGEDGLPPPLPPPPPPSYLRLDGPPPGPLAEEEEVGDLVEREEEAAEEME EGGGGGGGGGGGGGGGGGGGGGGGGSWLTGWFGDGEGWGRRKGSEEEGEE EEEEEEEEEGRREGSTRFGPLAEELAGAGAVLVERHSISSSASLPSSLPS SLPSSFPAAGESPTPPGGDRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGR GIELSMKRPGVSPPYTGEDEEIEYSVYGFAKPNQRDAFILSELALFFVGA AALLGVAGVMIRSTETSAVAPVWLSCLFAPLGVAIRYLLAIGMARHQALR PVLLRFPLQTFAANSLGSLLSALLAVLVPLARTSGRLETAHVMKAISMGL CGGLSTYSTFALELHKLPTDCAWVYALTTFGTTQLAAQLILATHKWGLW* back to topmRNA from alignment at chr5:1404751..1408520+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G05290.1 ID=NO05G05290.1|Name=NO05G05290.1|organism=Nannochloropsis oceanica|type=mRNA|length=3770bp|location=Sequence derived from alignment at chr5:1404751..1408520+ (Nannochloropsis oceanica) ATGGCAACCACTTCCACATTGACCTTGGTGCCGGTGGAGTTCTCGTCGCC
TCCACGGCGGCGGATCAAACGGGTAGGTTCACGGCCCGCCTATTCATTTC
CTCTCTCCCTCCCTGCATATGTTGCATCAAACTAACTTCCTTTATATGTT
TCCCTTCCCTCAGTCCCACCGCTCCTGGGTCACGGGTCGCGTAGTGCTCG
GTATCATCACCTTTTCCATCATCGGGAATATGACGAGGCTGGAATTGGAA
AAGTATATCACGCAACTTGATGTAAGTAGGCTGGGAAAAAGGGAGGAGGG
CAGGCCCCAAAAATGTGGAATCGAGGATAAATGTCAAGTGTCATAGTCCA
GGTCAAAGAATATGAATAGTTTCAATCATTTCATGTGTTGAAAATGCCCT
GCATCATTCACCGAATTCCTCGATTTTCTCTCCCCCCCTCTCCTCCTCTG
CAGGCCCGGCAAGGCAACATCGAGAGCTCCACGTACGCCGCTATCCTCGC
CAACCTCCTAGGATGTTTCATCATGGGATTTATGTACGAGAGTAGGGTAA
GTCATCACTCGCGAAAGCCACAGACTCCCTCTTATCATCGCTGTCATTTC
CTCAAAAAGATTAGACTTCCTCTCGTCAAAGCTGGCTTTCTTTCCTCTCC
CGGCACCTGGACAACCGTGATGGTTGACCGCCCGACCCCCCTGTCATCTC
ACCCTCCCTCCCGTCCTCCTTCCCGCAGGCGTTCCTCGAAAAGAAGCTAC
ACGGCATCCTCTCCTTTCCCGATGTGCCGGACGCCCCGTCCCTGTACGTC
GCAATCACCACCTGGCTCTGTGGCAGCATCACGACCTACAGCTCGTGGAA
CACAGGTGGACCCCTCCCTCCCTCCCTCTCTCATTCCCTTACCACATCCT
CCCCTCACATACACCCTCCCTCCCTTCCCCTGCTCGTCAGTGGTGGCTAC
GCGGGTCGTGGAAGACTCTTTTTGCTATGGCCTCTTCACTGCCATGACCG
GTGCCGCCACCTCCTACCTCGCGTTGCTCATGGGTAAGCCAAGCCAGCCC
TCCTTCCCTCCCTCTCCTCCTCCCTACCTTTCTTCCTTCCTCCCTCCATT
CCTCGTTTTGGCCGCATCGCTCACCCACTCACTCCCTTCCTTACCCGCTC
CCTCCCTCCCTCCCTCCTAGGCATGGATCTCGCTACTGGCTTCAAGCGCA
TCCAAATTTTGGAGGAACCGCCAAAGGAACGACAAAACCCTCTCTCCCTC
CCTCCCTCCCTTCCTCCCTCCCCCACCTTGGGCGAGGATGGCCTGCCTCC
TCCTCTTCCTCCTCCTCCCCCTCCTTCCTACCTGCGTCTCGACGGTCCGC
CGCCGGGGCCTCTGGCGGAGGAAGAGGAGGTGGGCGACTTGGTGGAGAGG
GAGGAGGAGGCAGCGGAGGAGATGGAGGAGGCCCGAAGGAGGAGGGAAGG
GGGGAGGAAGGGGGGGGGAGGCGCAGTAGCAGTAGCAGTGCGGGCATATT
TAGGGCGCTGCCAAAGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGGG
GAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGGTCATGGCTGACA
GGATGGTTTGGGGATGGAGAAGGATGGGGTCGCAGGAAGGGGAGCGAGGA
GGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGAGGAGGG
AGGGATCTACGAGGTTCGGTCCTTTGGCAGAGGAGCTGGTACGTCCTGGG
GAGCGGAAGAGCGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGACCGT
ACAGTGAGAGCCAGCAAATGGAGAGCAATGACTGCAAGCGTCACGCTCAA
AATTAATCTTTTCCGTCTTACACGCTCTCTCTCTCCATCTACCCCCTCCT
TTTTTCCCTTCCCTCCCTCCCATCCCATCCCTCCCCACCCTTTCCATACC
TCCCCCCTCTTCTTCCTCCTCAGGCAGGAGCGGGCGCAGTACTCGTCGAG
CGGCACAGCATATCTTCTTCGGCCTCCCTCCCTTCCTCCCTCCCTTCCTC
CCTCCCTTCGTCCTTCCCAGCGGCTGGGGAATCGCCTACTCCTCCGGGAG
GAGATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGG
GATCGAGCTATCGATGAAACGCCCTGGGGTGTCGCCTCCATACACAGGTC
AGCAGCAGCGGCAGCTATTTTCTCGGTCTAGCATGGACCGTGGATATGCA
CACCTCACCTTCCCTCCCTCCCTCCCTCTATCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCAGGCGAGGACGAGGAGATCGAGTATTCTGTGTA
CGGTTTCGCGAAGCCCAACCAGCGAGACGCCTTCATCCTCAGCGAGCTCG
CGCTCTTTTTTGTGGGGGCAGCTGCCCTTCTGGGGGTGGCAGGGGTGATG
ATAAGAAGGTGAGGAAGGGAGGGAGGGAGGGAGGGAGAGAGTACTATGGT
GCCGAAGCATGCGGGATCAAGAACCTCAATGGCTCCTCCCTTCCTTCCCT
CCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGCACGGAG
ACCTCGGCGGTGGCACCTGTGTGGCTCTCGTGCCTCTTCGCTCCCCTCGG
CGTGGCCATCCGCTATCTGCTGGCTATCGGCATGGCCCGACACCAGGTGA
GGACGGGAGGGAAGGAGGGAGGGAGGGAGGGAAGTGATCACATCTGTCCG
AAAGCTTGCCTACTGAGGTGTACTTCCCAATCCATGTCCTCCCTCCCTCC
CTCCCTTCCTCCCTTCTTCCCCCCCTCCCCCCCTCCCTCTCCCCCTCCCT
CCCTCCTGCAGGCCCTCCGGCCAGTCCTTCTCCGCTTCCCCCTCCAGACA
TTCGCCGCCAACTCTCTGGGTTCCCTCCTCTCTGCCCTCCTGGCCGTGCT
CGTGCCCCTGGCCAGGACAAGTGGACGTCTCGAGACGGCCCATGTGATGA
AGGCGATCAGGTGGGTAGGGAGGAAGGGGGGGAGGGGGAGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGAAAGGAAAGGGGATGCTTTACCTTTGGTC
ATGCACTTCACACGCCCACAAGCAGGAATCCCGTCTCCCTTCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTAGCATGGGCCTGTGCG
GGGGACTTAGTACCTACTCCACGTTTGCGCTGGAGCTGCATAAGCTTCCG
ACAGACTGCGCCTGGGTTTATGCCCTAACCACCTTCGGCACCACGCAGGT
AGGGAGGGATGGAGAGAGGGAGGAAGGGAGGGAGAAGAGGAGGGGACATG
AGGGTGGGGGAAAGTGGGCGGATAGACGTAGTGGTTCATCTTGTGAGGTA
TCTCCTTTCATCTCCTTTCGCCCTCCCTCCCTTTCTCCCTCCCTCCCTCC
CTCCCTTACTTACTTACTTCCTTCCCTTGTGCTGAACCAGCTTGCGGCCC
AGCTCATTTTGGCGACGCACAAGTGGGGCCTGTGGTGAGACTGTAGAAAG
AAGGGAGGGGGAGGGAGGAAAATGAGGGGGGGGATAGGAAGGTGGGGAGG
AGAAGGAGAGGGAAGAGGAGGAGGAGGGGAGAGGGGGAGGAGGAAAGGGA
GAAGAAGAAGGAGGAGGAGGGGGAGGAGGAAGGGGAGGAAGAGAGGGAGG
AAAGGAAAAGAGGAGGAGGA back to topCoding sequence (CDS) from alignment at chr5:1404751..1408520+ >NO05G05290.1 ID=NO05G05290.1|Name=NO05G05290.1|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at chr5:1404751..1408520+ (Nannochloropsis oceanica) ATGGCAACCACTTCCACATTGACCTTGGTGCCGGTGGAGTTCTCGTCGCC TCCACGGCGGCGGATCAAACGGTCCCACCGCTCCTGGGTCACGGGTCGCG TAGTGCTCGGTATCATCACCTTTTCCATCATCGGGAATATGACGAGGCTG GAATTGGAAAAGTATATCACGCAACTTGATGCCCGGCAAGGCAACATCGA GAGCTCCACGTACGCCGCTATCCTCGCCAACCTCCTAGGATGTTTCATCA TGGGATTTATGTACGAGAGTAGGGCGTTCCTCGAAAAGAAGCTACACGGC ATCCTCTCCTTTCCCGATGTGCCGGACGCCCCGTCCCTGTACGTCGCAAT CACCACCTGGCTCTGTGGCAGCATCACGACCTACAGCTCGTGGAACACAG TGGTGGCTACGCGGGTCGTGGAAGACTCTTTTTGCTATGGCCTCTTCACT GCCATGACCGGTGCCGCCACCTCCTACCTCGCGTTGCTCATGGGCATGGA TCTCGCTACTGGCTTCAAGCGCATCCAAATTTTGGAGGAACCGCCAAAGG AACGACAAAACCCTCTCTCCCTCCCTCCCTCCCTTCCTCCCTCCCCCACC TTGGGCGAGGATGGCCTGCCTCCTCCTCTTCCTCCTCCTCCCCCTCCTTC CTACCTGCGTCTCGACGGTCCGCCGCCGGGGCCTCTGGCGGAGGAAGAGG AGGTGGGCGACTTGGTGGAGAGGGAGGAGGAGGCAGCGGAGGAGATGGAG GAGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGGGGAGGAGGAGGGGG AGGAGGAGGAGGAGGAGGAGGAGGGTCATGGCTGACAGGATGGTTTGGGG ATGGAGAAGGATGGGGTCGCAGGAAGGGGAGCGAGGAGGAGGGGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAAGAAGGGAGGAGGGAGGGATCTACGAG GTTCGGTCCTTTGGCAGAGGAGCTGGCAGGAGCGGGCGCAGTACTCGTCG AGCGGCACAGCATATCTTCTTCGGCCTCCCTCCCTTCCTCCCTCCCTTCC TCCCTCCCTTCGTCCTTCCCAGCGGCTGGGGAATCGCCTACTCCTCCGGG AGGAGATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGA GGGATCGAGCTATCGATGAAACGCCCTGGGGTGTCGCCTCCATACACAGG CGAGGACGAGGAGATCGAGTATTCTGTGTACGGTTTCGCGAAGCCCAACC AGCGAGACGCCTTCATCCTCAGCGAGCTCGCGCTCTTTTTTGTGGGGGCA GCTGCCCTTCTGGGGGTGGCAGGGGTGATGATAAGAAGCACGGAGACCTC GGCGGTGGCACCTGTGTGGCTCTCGTGCCTCTTCGCTCCCCTCGGCGTGG CCATCCGCTATCTGCTGGCTATCGGCATGGCCCGACACCAGGCCCTCCGG CCAGTCCTTCTCCGCTTCCCCCTCCAGACATTCGCCGCCAACTCTCTGGG TTCCCTCCTCTCTGCCCTCCTGGCCGTGCTCGTGCCCCTGGCCAGGACAA GTGGACGTCTCGAGACGGCCCATGTGATGAAGGCGATCAGCATGGGCCTG TGCGGGGGACTTAGTACCTACTCCACGTTTGCGCTGGAGCTGCATAAGCT TCCGACAGACTGCGCCTGGGTTTATGCCCTAACCACCTTCGGCACCACGC AGCTTGCGGCCCAGCTCATTTTGGCGACGCACAAGTGGGGCCTGTGGTGA back to top
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