|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr5 | genome | chr5:1381439..1384395 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G05230.1 vs.
Match: XP_005856152.1 (sua5 family protein [Nannochloropsis gaditana CCMP526]; EKU20220.1 sua5 family protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 479.2 bits (1232), Expect = 1.400e-131 Identity = 278/459 (60.57%), Postives = 335/459 (72.98%), Query Frame = 0
Query: 7 SSSSASSSSPPAASTTAPPSPRPKAELTSDLIRCGAFLRVGGLVAFPTETVYGLGANAYMEKSVERIFEVKGRPLTDPLIVHVAQAEEAWAVFACGS------AANSSSSSSSEAQAAHHAK-EKQLISTLAASFWPGPLTLVAPAAADLPLAVSAGTGWVGVRVPSHPLARALLRAASVPVVAPSANRFGHVSPTSAAHVEADLGGHTMLILEGGREGEGDGEKAVCEIGIESTVVKVDAKEGRLTVLRAGAITCSQLKACVKGMDVEVLVKDHSSSSSSSANHHHHQQ-----QQQQQGRKILAEDDSEPQIAPGQCIKHYAPDRPTYLLSPSRALEGWAAAVAKQAVVLDVGGRLGGLEGVAVFYRDLSRKGDPREAAARLFEGLRWAESAERKGVKG------ELVVLVVDLREEGGTRGAQ------EDKEFEMALMDRVMRSASGQEAGAFLL 442
S+S+++SSSPP +AELTSD+ R G +LR GGLVAFPTETVYGLGANAY+EKSV RIFEVKGRPLTDPLIVHVAQ EEAW+VFACG AA+++S E +AA K EK L+STLA +FWPGPLTLVAPAAA +P AV+A TGWVGVRVPSH LARALLRAA+VPVVAPSANRFGHVSPTSAAHV+ADLGGH++LIL+ + E + CEIGIESTV KVDA+EGR+T+LRAGA+TCSQL++ ++G VEV+VK H+ H + ++ + L D++ PQIAPGQC+KHYAPDRPTYLLS +A E W +A +AV+LD+GGRL L+G+A Y DLS GD REAAA LF+ LRWAES + G KG +L+VL+VDLR EG R Q ED EF +AL+DR+MRSASGQ AG FL+
Sbjct: 4 STSASTSSSPPTI----------EAELTSDVDRAGDYLRAGGLVAFPTETVYGLGANAYLEKSVRRIFEVKGRPLTDPLIVHVAQIEEAWSVFACGGNTTYHHAASNNSVPHVEVRAAEEGKKEKDLLSTLAHAFWPGPLTLVAPAAAAIPSAVTAETGWVGVRVPSHSLARALLRAAAVPVVAPSANRFGHVSPTSAAHVQADLGGHSLLILK--EKEEHHAGQGACEIGIESTVAKVDAREGRVTILRAGAVTCSQLESALRGKGVEVVVKGHARQQEEQPKAKAHGEAGGDVMPKELRTEDLTNDENMPQIAPGQCLKHYAPDRPTYLLSALQATESWVDLLAGRAVILDMGGRLQRLKGLAAHYMDLSEAGDVREAAAGLFQALRWAESVD--GGKGKLESEEDLLVLIVDLRREGNRREGQGKTAEGEDAEFAVALIDRIMRSASGQAAGPFLV 448
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G05230.1 ID=NO05G05230.1|Name=NO05G05230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2682bp
GCACTCCTTCGGCTTGTCTGTGCTTGTGCGAGAAGGGAGGGTGGGAGGAT
GGGATGGGAGGCGACAGAAAAGCGATTAGGTGAGTCAAGCAATGCGTGCG
TGTGCGTTGGTGCTGGATATACATCTCTCTTCCAAACGACCCGATCGGGC
TGACCCTGACCAGCGGAGACAATCGGGATGCCACGATGGGTGAGCGGTTT
TCACACTGGGTGTGAATGGACTACGAAATGCGCCTCTCAACGCTGAAGAC
CTCGATCTTGGGGATTTTGATGCGGCACCGACCGTCGCACCGGACTGGCG
ATAGAATGCCGAATCAGAGTAGCGGGGGCATCGACCGCCGCTGTTGTCAC
CCTAAGCTATCCGTATCAAGAAGCACCAAAGCTACAAGGAGCACCAGCCA
ACCTCGTCACCTCATAAGTAAGTGCGACTTAATCCACCCATCAACGAAGC
CGCCGCCATCTCGCGTTCCGGTCCTTCTGTCTATGCGCCTAGGTGTCTCG
GCGTGCCCTCTTACCTTCGCCACCATCTGCCTTGTCTTTCATCTACAAGC
ACTCTGACGTCCTTCATAATTGTCCCTGCACACAGCCTCTTGCATCGAAG
CTGCCGCCGTCACGAGCTGCATCGCCACCACCACCACGACGACCCGACGT
GTCATCTTTAGCAGCGGTAGGAGCAGCAGGATCGGACTCCCTAATCAAAC
ACGCGCCTTTACACACGCGAGAGCGCCATTTGCATTCTCCTACTCCCCTG
CCTTCCAATTTCAAGTTCACACGCCGCGCTCTCGCTATATCTTTTCGAGT
GCTGCTTTTGCTGCCACCATTGCCGTGTCCAAAACCCAGCCACCCGCTTC
TTCCCCCCCCCTTGTCAAGAGCATCAGAATGACAGCCAGCTCCTCCTCTT
CATCGTCCGCTTCCTCTTCCTCACCCCCGGCAGCATCAACCACTGCCCCA
CCATCACCGCGACCCAAAGCCGAGCTCACTTCCGACCTAATCCGTTGCGG
GGCCTTTCTCAGGGTAGGTGGGCTAGTGGCGTTCCCCACGGAGACAGTGT
ACGGACTTGGTGCAAATGCCTACATGGAGAAGAGCGTGGAAAGGATATTC
GAAGTGAAGGGCCGACCACTGACTGATCCCTTGATAGTGCACGTCGCACA
GGCTGAGGAGGCCTGGGCGGTGTTTGCCTGCGGTAGTGCCGCGAACAGCA
GCAGCAGCAGCAGCAGTGAAGCACAGGCAGCCCATCATGCCAAAGAAAAA
CAGCTCATCTCCACCCTTGCTGCCAGCTTCTGGCCGGGCCCCCTTACGCT
GGTAGCCCCGGCTGCTGCTGACCTGCCCCTAGCAGTCTCGGCCGGCACAG
GGTGGGTAGGCGTGCGTGTGCCCTCCCACCCTCTGGCTCGGGCATTGTTA
CGCGCAGCATCAGTACCTGTGGTGGCCCCGTCGGCCAATCGCTTTGGGCA
TGTCAGTCCCACGAGTGCGGCCCATGTGGAGGCGGACCTGGGGGGGCATA
CCATGTTGATCCTGGAGGGAGGGAGGGAAGGAGAGGGGGACGGAGAAAAG
GCTGTGTGTGAGATCGGGATTGAATCGACGGTGGTCAAGGTAGATGCAAA
GGAGGGGAGGCTCACTGTCCTGAGGGCCGGGGCCATCACCTGCTCGCAGC
TCAAGGCATGCGTAAAAGGTATGGATGTCGAGGTTCTGGTCAAGGACCAT
AGCAGCAGCAGCAGCAGCAGCGCTAATCATCATCATCATCAGCAGCAACA
ACAACAGCAAGGCAGAAAAATTCTGGCAGAAGATGACAGCGAGCCCCAGA
TCGCTCCCGGGCAATGCATTAAACATTATGCACCTGACCGTCCCACCTAC
CTTCTCTCCCCCTCCCGCGCCCTGGAGGGATGGGCGGCGGCAGTGGCCAA
GCAGGCAGTCGTTTTGGATGTTGGAGGGCGTTTGGGAGGACTGGAGGGAG
TAGCGGTATTCTATCGGGACTTGAGCCGGAAGGGGGACCCTAGAGAGGCT
GCTGCAAGGCTTTTTGAAGGGCTCAGGTGGGCGGAGAGCGCGGAGAGGAA
AGGAGTGAAAGGGGAGCTGGTGGTGCTGGTAGTGGATTTGAGGGAGGAGG
GAGGAACGAGGGGAGCGCAGGAAGATAAGGAGTTTGAGATGGCGTTGATG
GATCGGGTGATGCGATCGGCGTCGGGGCAGGAGGCGGGGGCGTTCCTGTT
GGAGGGATAAGGAGAACCATGAGGAGGATCGCGGAAGGACGAAGAAAGCG
ATCAATGTGATTGACATTGGTGCTCGAAAGAGAGATAAAGACAGCCATAC
ATAAAGAACATCCGAAAGCACCTTACCAATTATAAATAAGAACACATATC
ACACAAACTCTTTTTGTATTCTTGTCGCTCCTAGTTTTGCATGAGTCTGT
GTTGATCCTCATTTTTATATCGAGCAGGTAGGGGTACTGTACCAGACTCA
GATTGGCCACGGGGGCAAGCTCATCGAATAATAGTATATGCGGGAGTAAG
GAAATATGCATGTGTGCATCGGTGAGTTTCATCCTATGCCTACTCTCCAT
TCAACGTGCCTGCACCGAGGAGGTAGGAATGGTGGACACAGGTGTGTCGA
GCAAATTGTCGCCAGCAAAAAAACTTTCTTCCTTGAATACCAGGACACTG
GCTGCTGCCCAGAGAAATAGGGAGCGTTGTCA back to topprotein sequence of NO05G05230.1 >NO05G05230.1-protein ID=NO05G05230.1-protein|Name=NO05G05230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MTASSSSSSSASSSSPPAASTTAPPSPRPKAELTSDLIRCGAFLRVGGLV
AFPTETVYGLGANAYMEKSVERIFEVKGRPLTDPLIVHVAQAEEAWAVFA
CGSAANSSSSSSSEAQAAHHAKEKQLISTLAASFWPGPLTLVAPAAADLP
LAVSAGTGWVGVRVPSHPLARALLRAASVPVVAPSANRFGHVSPTSAAHV
EADLGGHTMLILEGGREGEGDGEKAVCEIGIESTVVKVDAKEGRLTVLRA
GAITCSQLKACVKGMDVEVLVKDHSSSSSSSANHHHHQQQQQQQGRKILA
EDDSEPQIAPGQCIKHYAPDRPTYLLSPSRALEGWAAAVAKQAVVLDVGG
RLGGLEGVAVFYRDLSRKGDPREAAARLFEGLRWAESAERKGVKGELVVL
VVDLREEGGTRGAQEDKEFEMALMDRVMRSASGQEAGAFLLEG* back to topmRNA from alignment at chr5:1381439..1384395- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G05230.1 ID=NO05G05230.1|Name=NO05G05230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2957bp|location=Sequence derived from alignment at chr5:1381439..1384395- (Nannochloropsis oceanica)
GCACTCCTTCGGCTTGTCTGTGCTTGTGCGAGAAGGGAGGGTGGGAGGAT
GGGATGGGAGGCGACAGAAAAGCGATTAGGTGAGTCAAGCAATGCGTGCG
TGTGCGTTGGTGCTGGATATACATCTCTCTTCCAAACGACCCGATCGGGC
TGACCCTGACCAGCGGAGACAATCGGGATGCCACGATGGGTGAGCGGTTT
TCACACTGGGTGTGAATGGACTACGAAATGCGCCTCTCAACGCTGAAGAC
CTCGATCTTGGGGATTTTGATGCGGCACCGACCGTCGCACCGGACTGGCG
ATAGAATGCCGAATCAGAGTAGCGGGGGTACGTAGCCTCCGTAAGTGGTA
TGATTCCTACCACACTGCACAAACAAACAAAAATACAGCAAACAGCACTC
GACGAGAGACTTAAAGCTGCTTACCCATCATACTGACACGCACACACGCG
CATCTATAGGCATCGACCGCCGCTGTTGTCACCCTAAGCTATCCGTATCA
AGAAGCACCAAAGCTACAAGGAGCACCAGCCAACCTCGTCACCTCATAAG
TAAGTGCGACTTAATCCACCCATCAACGAAGCCGCCGCCATCTCGCGTTC
CGGTCCTTCTGTCTATGCGCCTAGGTGTCTCGGCGTGCCCTCTTACCTTC
GCCACCATCTGCCTTGTCTTTCATCTACAAGCACGTAAGTACCTTGATAC
TTCCTCTTCCTCCCAACCTCCTTCTGCCCCGTAAGCCTTTTGATCGCAAT
ACATGCCGCTCTTTTCCCTCTTTCATATTTCTTGCGATTTGATCATTAAC
ATATGCTCCCTGGCTCGCTCTGCATAGTCTGACGTCCTTCATAATTGTCC
CTGCACACAGCCTCTTGCATCGAAGCTGCCGCCGTCACGAGCTGCATCGC
CACCACCACCACGACGACCCGACGTGTCATCTTTAGCAGCGGTAGGAGCA
GCAGGATCGGACTCCCTAATCAAACACGCGCCTTTACACACGCGAGAGCG
CCATTTGCATTCTCCTACTCCCCTGCCTTCCAATTTCAAGTTCACACGCC
GCGCTCTCGCTATATCTTTTCGAGTGCTGCTTTTGCTGCCACCATTGCCG
TGTCCAAAACCCAGCCACCCGCTTCTTCCCCCCCCCTTGTCAAGAGCATC
AGAATGACAGCCAGCTCCTCCTCTTCATCGTCCGCTTCCTCTTCCTCACC
CCCGGCAGCATCAACCACTGCCCCACCATCACCGCGACCCAAAGCCGAGC
TCACTTCCGACCTAATCCGTTGCGGGGCCTTTCTCAGGGTAGGTGGGCTA
GTGGCGTTCCCCACGGAGACAGTGTACGGACTTGGTGCAAATGCCTACAT
GGAGAAGAGCGTGGAAAGGATATTCGAAGTGAAGGGCCGACCACTGACTG
ATCCCTTGATAGTGCACGTCGCACAGGCTGAGGAGGCCTGGGCGGTGTTT
GCCTGCGGTAGTGCCGCGAACAGCAGCAGCAGCAGCAGCAGTGAAGCACA
GGCAGCCCATCATGCCAAAGAAAAACAGCTCATCTCCACCCTTGCTGCCA
GCTTCTGGCCGGGCCCCCTTACGCTGGTAGCCCCGGCTGCTGCTGACCTG
CCCCTAGCAGTCTCGGCCGGCACAGGGTGGGTAGGCGTGCGTGTGCCCTC
CCACCCTCTGGCTCGGGCATTGTTACGCGCAGCATCAGTACCTGTGGTGG
CCCCGTCGGCCAATCGCTTTGGGCATGTCAGTCCCACGAGTGCGGCCCAT
GTGGAGGCGGACCTGGGGGGGCATACCATGTTGATCCTGGAGGGAGGGAG
GGAAGGAGAGGGGGACGGAGAAAAGGCTGTGTGTGAGATCGGGATTGAAT
CGACGGTGGTCAAGGTAGATGCAAAGGAGGGGAGGCTCACTGTCCTGAGG
GCCGGGGCCATCACCTGCTCGCAGCTCAAGGCATGCGTAAAAGGTATGGA
TGTCGAGGTTCTGGTCAAGGACCATAGCAGCAGCAGCAGCAGCAGCGCTA
ATCATCATCATCATCAGCAGCAACAACAACAGCAAGGCAGAAAAATTCTG
GCAGAAGATGACAGCGAGCCCCAGATCGCTCCCGGGCAATGCATTAAACA
TTATGCACCTGACCGTCCCACCTACCTTCTCTCCCCCTCCCGCGCCCTGG
AGGGATGGGCGGCGGCAGTGGCCAAGCAGGCAGTCGTTTTGGATGTTGGA
GGGCGTTTGGGAGGACTGGAGGGAGTAGCGGTATTCTATCGGGACTTGAG
CCGGAAGGGGGACCCTAGAGAGGCTGCTGCAAGGCTTTTTGAAGGGCTCA
GGTGGGCGGAGAGCGCGGAGAGGAAAGGAGTGAAAGGGGAGCTGGTGGTG
CTGGTAGTGGATTTGAGGGAGGAGGGAGGAACGAGGGGAGCGCAGGAAGA
TAAGGAGTTTGAGATGGCGTTGATGGATCGGGTGATGCGATCGGCGTCGG
GGCAGGAGGCGGGGGCGTTCCTGTTGGAGGGATAAGGAGAACCATGAGGA
GGATCGCGGAAGGACGAAGAAAGCGATCAATGTGATTGACATTGGTGCTC
GAAAGAGAGATAAAGACAGCCATACATAAAGAACATCCGAAAGCACCTTA
CCAATTATAAATAAGAACACATATCACACAAACTCTTTTTGTATTCTTGT
CGCTCCTAGTTTTGCATGAGTCTGTGTTGATCCTCATTTTTATATCGAGC
AGGTAGGGGTACTGTACCAGACTCAGATTGGCCACGGGGGCAAGCTCATC
GAATAATAGTATATGCGGGAGTAAGGAAATATGCATGTGTGCATCGGTGA
GTTTCATCCTATGCCTACTCTCCATTCAACGTGCCTGCACCGAGGAGGTA
GGAATGGTGGACACAGGTGTGTCGAGCAAATTGTCGCCAGCAAAAAAACT
TTCTTCCTTGAATACCAGGACACTGGCTGCTGCCCAGAGAAATAGGGAGC
GTTGTCA back to topCoding sequence (CDS) from alignment at chr5:1381439..1384395- >NO05G05230.1 ID=NO05G05230.1|Name=NO05G05230.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr5:1381439..1384395- (Nannochloropsis oceanica)
ATGACAGCCAGCTCCTCCTCTTCATCGTCCGCTTCCTCTTCCTCACCCCC
GGCAGCATCAACCACTGCCCCACCATCACCGCGACCCAAAGCCGAGCTCA
CTTCCGACCTAATCCGTTGCGGGGCCTTTCTCAGGGTAGGTGGGCTAGTG
GCGTTCCCCACGGAGACAGTGTACGGACTTGGTGCAAATGCCTACATGGA
GAAGAGCGTGGAAAGGATATTCGAAGTGAAGGGCCGACCACTGACTGATC
CCTTGATAGTGCACGTCGCACAGGCTGAGGAGGCCTGGGCGGTGTTTGCC
TGCGGTAGTGCCGCGAACAGCAGCAGCAGCAGCAGCAGTGAAGCACAGGC
AGCCCATCATGCCAAAGAAAAACAGCTCATCTCCACCCTTGCTGCCAGCT
TCTGGCCGGGCCCCCTTACGCTGGTAGCCCCGGCTGCTGCTGACCTGCCC
CTAGCAGTCTCGGCCGGCACAGGGTGGGTAGGCGTGCGTGTGCCCTCCCA
CCCTCTGGCTCGGGCATTGTTACGCGCAGCATCAGTACCTGTGGTGGCCC
CGTCGGCCAATCGCTTTGGGCATGTCAGTCCCACGAGTGCGGCCCATGTG
GAGGCGGACCTGGGGGGGCATACCATGTTGATCCTGGAGGGAGGGAGGGA
AGGAGAGGGGGACGGAGAAAAGGCTGTGTGTGAGATCGGGATTGAATCGA
CGGTGGTCAAGGTAGATGCAAAGGAGGGGAGGCTCACTGTCCTGAGGGCC
GGGGCCATCACCTGCTCGCAGCTCAAGGCATGCGTAAAAGGTATGGATGT
CGAGGTTCTGGTCAAGGACCATAGCAGCAGCAGCAGCAGCAGCGCTAATC
ATCATCATCATCAGCAGCAACAACAACAGCAAGGCAGAAAAATTCTGGCA
GAAGATGACAGCGAGCCCCAGATCGCTCCCGGGCAATGCATTAAACATTA
TGCACCTGACCGTCCCACCTACCTTCTCTCCCCCTCCCGCGCCCTGGAGG
GATGGGCGGCGGCAGTGGCCAAGCAGGCAGTCGTTTTGGATGTTGGAGGG
CGTTTGGGAGGACTGGAGGGAGTAGCGGTATTCTATCGGGACTTGAGCCG
GAAGGGGGACCCTAGAGAGGCTGCTGCAAGGCTTTTTGAAGGGCTCAGGT
GGGCGGAGAGCGCGGAGAGGAAAGGAGTGAAAGGGGAGCTGGTGGTGCTG
GTAGTGGATTTGAGGGAGGAGGGAGGAACGAGGGGAGCGCAGGAAGATAA
GGAGTTTGAGATGGCGTTGATGGATCGGGTGATGCGATCGGCGTCGGGGC
AGGAGGCGGGGGCGTTCCTGTTGGAGGGATAA back to top
|