NO05G04800.1, NO05G04800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04800.1
Unique NameNO05G04800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length935
Alignment locationchr5:1246478..1247913 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1246478..1247913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G04800.1 vs.
Match: XP_005854934.1 (hypothetical protein NGA_0388400 [Nannochloropsis gaditana CCMP526]; EKU21422.1 hypothetical protein NGA_0388400 [Nannochloropsis gaditana CCMP526]; EWM27921.1 Methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 471.9 bits (1213), Expect = 1.400e-129
Identity = 232/276 (84.06%), Postives = 249/276 (90.22%), Query Frame = 0 
Query:    1 MRALQRFTQTASCLCVIPASAFVSGFVRPPPRNSCS-MASSASATRRGLTTMNIKPADVLKDPKWPEEAFFRATDFQRQDESTDTSFYSSPRFVTHIDDPAIKALTDYYAVAFPPNAEVLDICSSWISHYPEGAKRKRTVGMGMNEAELAKNKQLDEYVVKDLNVDPTLPFCDESFDVVTCVVSVDYLIKPLEVFAEISRVLKPGGLCIMSMSNRCFPTKAISIWLETGDAGHVFIVGAYFHYGSKDFEAPKCVDISPNPGRSDPMFIVQAAKKME 276
            MR+LQ +++ ASC C +P +AF++    P    SCS +ASS S+TRRGLTTMN+K ADVLKDPKWPEE FFR TD+QRQDES+DTSFYSSPRFVTHIDDPAIKALTDYYAV FPPNAEVLDICSSWISHYPEGAKRKRTVGMGMN+AELAKNKQLDEYVVKDLNVDPTLPFCDESFDVVTCVVSVDYLI+PLEVFAEI+RVLKPGG CIMSMSNRCFPTKA+SIWLETGDAGHVFIVGAYF YGS  FE P  VDISPNPGRSDPMFIVQAAKK E
Sbjct:    1 MRSLQHWSRAASCFCALPVTAFIA----PTFSQSCSDVASSPSSTRRGLTTMNVKIADVLKDPKWPEEPFFRPTDWQRQDESSDTSFYSSPRFVTHIDDPAIKALTDYYAVTFPPNAEVLDICSSWISHYPEGAKRKRTVGMGMNKAELAKNKQLDEYVVKDLNVDPTLPFCDESFDVVTCVVSVDYLIRPLEVFAEIARVLKPGGTCIMSMSNRCFPTKAVSIWLETGDAGHVFIVGAYFRYGSPLFEPPTAVDISPNPGRSDPMFIVQAAKKKE 272
The following BLAST results are available for this feature:
BLAST of NO05G04800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854934.11.400e-12984.06hypothetical protein NGA_0388400 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04800NO05G04800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04800.1NO05G04800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04800.1.cds1NO05G04800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04800.1.cds2NO05G04800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04800.1.cds3NO05G04800.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04800.1.cds4NO05G04800.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04800.1 ID=NO05G04800.1|Name=NO05G04800.1|organism=Nannochloropsis oceanica|type=mRNA|length=935bp
AAAAAACAGTCATATGCGTGCCTTGCAACGCTTTACCCAAACGGCGTCGT
GCCTCTGCGTCATTCCCGCCTCTGCTTTTGTCAGCGGCTTCGTCCGACCT
CCCCCTCGCAACAGCTGCAGCATGGCCTCCTCTGCCTCCGCCACGCGCCG
TGGCCTCACCACCATGAATATCAAGCCCGCTGACGTCTTAAAAGACCCCA
AGTGGCCCGAGGAGGCCTTCTTCCGCGCGACTGATTTCCAACGGCAAGAC
GAGTCGACCGACACTTCGTTTTACAGCAGTCCCCGCTTTGTCACGCACAT
CGATGACCCGGCAATCAAGGCTCTGACCGATTACTACGCGGTTGCCTTCC
CTCCCAATGCTGAAGTTCTCGACATCTGTTCGTCGTGGATCTCGCATTAC
CCAGAGGGAGCCAAGCGAAAGCGGACAGTTGGCATGGGAATGAATGAGGC
TGAGCTTGCCAAAAATAAGCAGCTGGATGAGTACGTCGTCAAGGACCTGA
ACGTGGACCCCACCCTTCCCTTTTGCGACGAGAGCTTCGATGTAGTGACC
TGTGTAGTTAGTGTGGATTACCTTATTAAACCTCTGGAAGTCTTCGCGGA
GATCTCGCGTGTGCTGAAACCAGGAGGATTATGCATCATGAGCATGAGCA
ATAGATGTTTCCCGACCAAGGCGATCTCTATCTGGTTGGAGACTGGGGAT
GCGGGTCATGTTTTCATCGTCGGCGCGTACTTCCATTATGGCAGTAAGGA
TTTCGAGGCCCCTAAATGTGTTGATATAAGCCCTAATCCCGGGCGGAGCG
ATCCCATGTTTATTGTTCAGGCGGCCAAGAAGATGGAGAAGGCGGCTGCA
TAATAGAAGGAGGGATAGAAGGATGGAGGGGAGGGTGAGGAAAATAAGGC
AAGAAAAACAAAGAAAAGGACGAAGTTAAGAAGTG
back to top

protein sequence of NO05G04800.1

>NO05G04800.1-protein ID=NO05G04800.1-protein|Name=NO05G04800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MRALQRFTQTASCLCVIPASAFVSGFVRPPPRNSCSMASSASATRRGLTT
MNIKPADVLKDPKWPEEAFFRATDFQRQDESTDTSFYSSPRFVTHIDDPA
IKALTDYYAVAFPPNAEVLDICSSWISHYPEGAKRKRTVGMGMNEAELAK
NKQLDEYVVKDLNVDPTLPFCDESFDVVTCVVSVDYLIKPLEVFAEISRV
LKPGGLCIMSMSNRCFPTKAISIWLETGDAGHVFIVGAYFHYGSKDFEAP
KCVDISPNPGRSDPMFIVQAAKKMEKAAA*
back to top

mRNA from alignment at chr5:1246478..1247913+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04800.1 ID=NO05G04800.1|Name=NO05G04800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1436bp|location=Sequence derived from alignment at chr5:1246478..1247913+ (Nannochloropsis oceanica)
AAAAAACAGTCATATGCGTGCCTTGCAACGCTTTACCCAAACGGCGTCGT
GCCTCTGCGTCATTCCCGCCTCTGCTTTTGTCAGCGGCTTCGTCCGACCT
CCCCCTCGCAACAGCTGCAGCATGGCCTCCTCTGCCTCCGCCACGCGCCG
TGGCCTCACCACCATGAATATCAAGCCCGCTGACGTCTTAAAAGACCCCA
AGTGGCCCGAGGAGGCCTTCTTCCGCGCGACTGATTTCCAACGGCAAGAC
GAGTCGACCGACACTTCGTTTTACAGCAGTCCCCGCTTTGTCACGCACAT
CGATGACCCGGCAATCAAGGCTCTGACCGGTAATGATTTGGCTTGGGCAG
GTTCTTTGCTTTTTCCTTGTGATACCTCTTCTACCTGTTGTACGCTTCAT
TCTGTGATTGTCGTGTTGATCGCCGGGTAGATGGGTTTCGGACTTTGGGC
TCGTCATCCCTTCCTCCATCCATCTCTCATGCCCGTCTGTCGCCCCTCCT
TGCCTCTTCTCTAGATTACTACGCGGTTGCCTTCCCTCCCAATGCTGAAG
TTCTCGACATCTGTTCGTCGTGGATCTCGCATTACCCAGAGGGAGCCAAG
CGAAAGCGGACAGTTGGCATGGGAATGAATGAGGCTGAGCTTGCCAAAAA
TAAGCAGCTGGATGAGTACGTCGTCAAGGTATGGCCTCGGATAGGATCGT
TTCCTTCATTCCTTCATGTGAGCCCCCGTATTGATAAATTGGCGATTGAC
TTTGCTTCCTTCCCCTGCCTCTCTCCCTCCCTCCCTCCCTCTACCCCAGG
ACCTGAACGTGGACCCCACCCTTCCCTTTTGCGACGAGAGCTTCGATGTA
GTGACCTGTGTAGTTAGTGTGGATTACCTTATTAAACCTCTGGAAGTCTT
CGCGGAGATCTCGCGTGTGCTGAAACCAGGAGGATTATGCATCATGAGCA
TGAGCAATAGATGTTTCCCGACCAAGGCGATCTCTATCTGGTTGGAGACT
GGGGATGCGGGTCATGTTTTCATCGTGTGAGTAGGGGAAGGAGGGCAGGG
GGGATGGAGAGTTGAGAAGAGGAGGGGAGGGACAGGAGTTCATGCCTTCT
TTAATAGCCGAGGACCCACAATTATGTATCACTTACCTAACGGCCGCTGC
TCGTCCATTCGAAATTTGAAGACGTCACACCTCACAACCGTTCCTTCCTT
CCCTATCCCTCACCCCAACAGCGGCGCGTACTTCCATTATGGCAGTAAGG
ATTTCGAGGCCCCTAAATGTGTTGATATAAGCCCTAATCCCGGGCGGAGC
GATCCCATGTTTATTGTTCAGGCGGCCAAGAAGATGGAGAAGGCGGCTGC
ATAATAGAAGGAGGGATAGAAGGATGGAGGGGAGGGTGAGGAAAATAAGG
CAAGAAAAACAAAGAAAAGGACGAAGTTAAGAAGTG
back to top

Coding sequence (CDS) from alignment at chr5:1246478..1247913+

>NO05G04800.1 ID=NO05G04800.1|Name=NO05G04800.1|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at chr5:1246478..1247913+ (Nannochloropsis oceanica)
ATGCGTGCCTTGCAACGCTTTACCCAAACGGCGTCGTGCCTCTGCGTCAT
TCCCGCCTCTGCTTTTGTCAGCGGCTTCGTCCGACCTCCCCCTCGCAACA
GCTGCAGCATGGCCTCCTCTGCCTCCGCCACGCGCCGTGGCCTCACCACC
ATGAATATCAAGCCCGCTGACGTCTTAAAAGACCCCAAGTGGCCCGAGGA
GGCCTTCTTCCGCGCGACTGATTTCCAACGGCAAGACGAGTCGACCGACA
CTTCGTTTTACAGCAGTCCCCGCTTTGTCACGCACATCGATGACCCGGCA
ATCAAGGCTCTGACCGATTACTACGCGGTTGCCTTCCCTCCCAATGCTGA
AGTTCTCGACATCTGTTCGTCGTGGATCTCGCATTACCCAGAGGGAGCCA
AGCGAAAGCGGACAGTTGGCATGGGAATGAATGAGGCTGAGCTTGCCAAA
AATAAGCAGCTGGATGAGTACGTCGTCAAGGACCTGAACGTGGACCCCAC
CCTTCCCTTTTGCGACGAGAGCTTCGATGTAGTGACCTGTGTAGTTAGTG
TGGATTACCTTATTAAACCTCTGGAAGTCTTCGCGGAGATCTCGCGTGTG
CTGAAACCAGGAGGATTATGCATCATGAGCATGAGCAATAGATGTTTCCC
GACCAAGGCGATCTCTATCTGGTTGGAGACTGGGGATGCGGGTCATGTTT
TCATCGTCGGCGCGTACTTCCATTATGGCAGTAAGGATTTCGAGGCCCCT
AAATGTGTTGATATAAGCCCTAATCCCGGGCGGAGCGATCCCATGTTTAT
TGTTCAGGCGGCCAAGAAGATGGAGAAGGCGGCTGCATAA
back to top
Synonyms
Publications