NO05G03630.1, NO05G03630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03630.1
Unique NameNO05G03630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length924
Alignment locationchr5:956944..958160 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:956944..958160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03630.1 vs.
Match: XP_005853649.1 (F-type H+-transporting ATPase subunit gamma [Nannochloropsis gaditana CCMP526]; EKU22707.1 F-type H+-transporting ATPase subunit gamma [Nannochloropsis gaditana CCMP526]; EWM28027.1 atp synthase gamma [Nannochloropsis gaditana])

HSP 1 Score: 510.4 bits (1313), Expect = 4.000e-141
Identity = 262/281 (93.24%), Postives = 275/281 (97.86%), Query Frame = 0 
Query:   24 RGMASEKEIAARIKSTTGINKITKTMKMVAASKMRGDEDRLKAGRPFQRWVDGFTPKPVLLEDFAKDIESLPQSNLLVVVTTDRGLCGGVNSSLARVLKNMVPALDKAKKDVQMFIIGDKGRATMGRPLGEFITQINSDSATPYNFSLAAALAQDVSQIKADAVHVVFNRFRSAIAYEATVKTMYPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTLFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALE 305
            RGMASEKEIAAR+KST GINKITKTMKMVAASKMRGDEDRLKAGRPFQ+WVDGFTP PVLLEDFAK ++ LPQSNLLV++TTDRGLCGGVNSSLARV+K+MVPALDK KKDVQ+FI+GDKGRATMGRPLGEFITQINSDS TPYNFSLAAALAQDV+QIKADAVHVVFNRFRSAIAYEATVKT+YPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATT+FTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALE
Sbjct:    4 RGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPPVLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFITQINSDSGTPYNFSLAAALAQDVTQIKADAVHVVFNRFRSAIAYEATVKTLYPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALE 284
The following BLAST results are available for this feature:
BLAST of NO05G03630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853649.14.000e-14193.24F-type H+-transporting ATPase subunit gamma [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03630NO05G03630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03630.1NO05G03630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03630.1.cds1NO05G03630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03630.1.cds2NO05G03630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03630.1 ID=NO05G03630.1|Name=NO05G03630.1|organism=Nannochloropsis oceanica|type=mRNA|length=924bp
ATGTCTGCCAGTCTAGGTTTGCACGCCGCCCGCCGTTTGGCGCTGGGCGG
GGCGACCAGGATTGCGCTGCGTGGTATGGCCTCAGAGAAGGAGATTGCCG
CTCGCATCAAGTCCACGACGGGCATCAACAAGATCACCAAGACGATGAAG
ATGGTGGCTGCCTCCAAAATGCGCGGTGACGAGGACCGTCTCAAGGCAGG
GCGTCCCTTCCAGAGGTGGGTGGATGGCTTCACGCCCAAGCCCGTTCTCC
TGGAGGATTTCGCCAAGGATATTGAGAGCTTGCCGCAATCCAACTTGTTG
GTCGTCGTGACCACCGACCGTGGCCTGTGTGGTGGAGTCAACTCATCTCT
GGCCCGTGTGTTGAAGAACATGGTTCCGGCTTTGGACAAGGCGAAAAAGG
ACGTGCAGATGTTCATCATTGGTGACAAGGGGCGTGCTACGATGGGCCGG
CCCCTGGGGGAGTTCATCACGCAGATTAACTCGGATTCGGCTACTCCCTA
CAACTTTTCTCTCGCTGCGGCCTTGGCGCAGGATGTGAGCCAGATCAAGG
CGGATGCTGTGCATGTGGTGTTTAATCGTTTCCGGTCCGCCATCGCCTAT
GAAGCGACGGTCAAGACGATGTACCCGCCTGCGGCGTTGACAGGAGAGCC
CTATGTGGAGTACGAGTTTGAGCCTGACACCAAGACGGAGGTACTTGACG
ACATGTACGAGATGGCGATAGCGACGACTCTTTTCACCAGCATGTTGGAA
AGTGCCGCGGCCGAGCAGAGCTCCCGGATGAATGCCATGGAGAACGCTTC
GAAGAACGGGGAGGATTTGATCAAGGAGCTGTCGATTCAGTATAACAGGG
CGCGGCAGTCGAGGATTACCACGGAGCTTGTGGAGATCATTTCGGGAGCG
TCGGCGCTGGAGGCGGCGCGTTAA
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protein sequence of NO05G03630.1

>NO05G03630.1-protein ID=NO05G03630.1-protein|Name=NO05G03630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MSASLGLHAARRLALGGATRIALRGMASEKEIAARIKSTTGINKITKTMK
MVAASKMRGDEDRLKAGRPFQRWVDGFTPKPVLLEDFAKDIESLPQSNLL
VVVTTDRGLCGGVNSSLARVLKNMVPALDKAKKDVQMFIIGDKGRATMGR
PLGEFITQINSDSATPYNFSLAAALAQDVSQIKADAVHVVFNRFRSAIAY
EATVKTMYPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTLFTSMLE
SAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGA
SALEAAR*
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mRNA from alignment at chr5:956944..958160+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03630.1 ID=NO05G03630.1|Name=NO05G03630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp|location=Sequence derived from alignment at chr5:956944..958160+ (Nannochloropsis oceanica)
ATGTCTGCCAGTCTAGGTTTGCACGCCGCCCGCCGTTTGGCGCTGGGCGG
GGCGACCAGGTATGTGATCAAAGCAAGAGGAGGGAGAGGGGAGTGCTCTC
GGCCCGTCTGCATTGGTGTGTGAAAGAGATGGTAGCGTCTTGCGTGTATA
GCGTACAATGTATACAAGTAGAGAGAGAAGAGGGAGAATGTCCTCCTCCT
GGTTTTCTGAAGCCTCGGCGTACGCATTTCGCATCCTCCCTTCCTCCCTC
CCTCCTGTCATGTCTTAACCCGCTTTTCTATCTCTACCTTCCTCACTCTT
CCCGCACAACTCACCTCCATAACCGTCCCTCACTATCCTCTTTCAATATA
AGGATTGCGCTGCGTGGTATGGCCTCAGAGAAGGAGATTGCCGCTCGCAT
CAAGTCCACGACGGGCATCAACAAGATCACCAAGACGATGAAGATGGTGG
CTGCCTCCAAAATGCGCGGTGACGAGGACCGTCTCAAGGCAGGGCGTCCC
TTCCAGAGGTGGGTGGATGGCTTCACGCCCAAGCCCGTTCTCCTGGAGGA
TTTCGCCAAGGATATTGAGAGCTTGCCGCAATCCAACTTGTTGGTCGTCG
TGACCACCGACCGTGGCCTGTGTGGTGGAGTCAACTCATCTCTGGCCCGT
GTGTTGAAGAACATGGTTCCGGCTTTGGACAAGGCGAAAAAGGACGTGCA
GATGTTCATCATTGGTGACAAGGGGCGTGCTACGATGGGCCGGCCCCTGG
GGGAGTTCATCACGCAGATTAACTCGGATTCGGCTACTCCCTACAACTTT
TCTCTCGCTGCGGCCTTGGCGCAGGATGTGAGCCAGATCAAGGCGGATGC
TGTGCATGTGGTGTTTAATCGTTTCCGGTCCGCCATCGCCTATGAAGCGA
CGGTCAAGACGATGTACCCGCCTGCGGCGTTGACAGGAGAGCCCTATGTG
GAGTACGAGTTTGAGCCTGACACCAAGACGGAGGTACTTGACGACATGTA
CGAGATGGCGATAGCGACGACTCTTTTCACCAGCATGTTGGAAAGTGCCG
CGGCCGAGCAGAGCTCCCGGATGAATGCCATGGAGAACGCTTCGAAGAAC
GGGGAGGATTTGATCAAGGAGCTGTCGATTCAGTATAACAGGGCGCGGCA
GTCGAGGATTACCACGGAGCTTGTGGAGATCATTTCGGGAGCGTCGGCGC
TGGAGGCGGCGCGTTAA
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Coding sequence (CDS) from alignment at chr5:956944..958160+

>NO05G03630.1 ID=NO05G03630.1|Name=NO05G03630.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr5:956944..958160+ (Nannochloropsis oceanica)
ATGTCTGCCAGTCTAGGTTTGCACGCCGCCCGCCGTTTGGCGCTGGGCGG
GGCGACCAGGATTGCGCTGCGTGGTATGGCCTCAGAGAAGGAGATTGCCG
CTCGCATCAAGTCCACGACGGGCATCAACAAGATCACCAAGACGATGAAG
ATGGTGGCTGCCTCCAAAATGCGCGGTGACGAGGACCGTCTCAAGGCAGG
GCGTCCCTTCCAGAGGTGGGTGGATGGCTTCACGCCCAAGCCCGTTCTCC
TGGAGGATTTCGCCAAGGATATTGAGAGCTTGCCGCAATCCAACTTGTTG
GTCGTCGTGACCACCGACCGTGGCCTGTGTGGTGGAGTCAACTCATCTCT
GGCCCGTGTGTTGAAGAACATGGTTCCGGCTTTGGACAAGGCGAAAAAGG
ACGTGCAGATGTTCATCATTGGTGACAAGGGGCGTGCTACGATGGGCCGG
CCCCTGGGGGAGTTCATCACGCAGATTAACTCGGATTCGGCTACTCCCTA
CAACTTTTCTCTCGCTGCGGCCTTGGCGCAGGATGTGAGCCAGATCAAGG
CGGATGCTGTGCATGTGGTGTTTAATCGTTTCCGGTCCGCCATCGCCTAT
GAAGCGACGGTCAAGACGATGTACCCGCCTGCGGCGTTGACAGGAGAGCC
CTATGTGGAGTACGAGTTTGAGCCTGACACCAAGACGGAGGTACTTGACG
ACATGTACGAGATGGCGATAGCGACGACTCTTTTCACCAGCATGTTGGAA
AGTGCCGCGGCCGAGCAGAGCTCCCGGATGAATGCCATGGAGAACGCTTC
GAAGAACGGGGAGGATTTGATCAAGGAGCTGTCGATTCAGTATAACAGGG
CGCGGCAGTCGAGGATTACCACGGAGCTTGTGGAGATCATTTCGGGAGCG
TCGGCGCTGGAGGCGGCGCGTTAA
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Synonyms
Publications