NO05G03220.1, NO05G03220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03220.1
Unique NameNO05G03220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1137
Alignment locationchr5:834723..836497 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:834723..836497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03220.1 vs.
Match: EWM28087.1 (pyridoxamine 5 -phosphate oxidase-related fmn-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 540.0 bits (1390), Expect = 5.600e-150
Identity = 288/374 (77.01%), Postives = 319/374 (85.29%), Query Frame = 0 
Query:    1 MRRPANTAWLAALGSLLLLPCAMAFLAVPLRSRSRQHPGAVLSSSPSPSRLHAVATVAPVQANPSTSSSTPQDQQQQEQQ--------QQPAGDGFGGAHPIRLSISERARTVTYVATAATLGTFSESDTTPFGSYVDYILDDKGWPVLLLSDQSLHTQNIKANPQVSLFVQMPKTGKGDTSTSAALSRVTLIGNIVPVEAEELPAIRTAYSIVHSYSERLVESPKFSFYKLQPERVYFVGGFGVLSKWIPVAEYETAVPDILAHEMSRIVARMNGEHEAELRLMCRHFLGAQEVDQVTATTVDRLGIDLRVTSGELTDEYRVGFREKVTSTEDAKSELVKMFQEAWEREHDYAWIEELPPVIRYAEDILRKRG 367
            MRRP  ++W+A   + L+LP   AF + PLRS S   P   LSSSPS SRL A ATV+P QA+PST+S        Q+QQ          PAGDG GGA PIRLS+SERARTVTYVATAATLGTFSE+ +TPFGSYVDYILDDKGWPVLLLS+QSLHTQNI+ NPQVSLFVQMP++GK D + SAALSRVTLIG+IVPVEAEELPAIRTAYSIVHSYSERLVESPKFSF KL+PERVYFVGGFGV SKW+ V++YE AVPD+LAHEM+RIVAR+N EHE ELRLMCRHFLGA++VDQVTATTVDRLGIDLRVT+GELTDEYRVGFREKV STEDAKSELVKMFQEAWEREHDYAW +ELPPVIRYAEDILRK+G
Sbjct:    1 MRRPTLSSWVAV--NALVLPAVHAFFSAPLRSLSPP-PCRALSSSPS-SRLQAAATVSPTQASPSTASQNSGGNAAQQQQTGRVEPSPSPPAGDGIGGARPIRLSLSERARTVTYVATAATLGTFSEAASTPFGSYVDYILDDKGWPVLLLSEQSLHTQNIRVNPQVSLFVQMPRSGKADAA-SAALSRVTLIGSIVPVEAEELPAIRTAYSIVHSYSERLVESPKFSFCKLKPERVYFVGGFGVQSKWLEVSDYEAAVPDVLAHEMARIVARINQEHEPELRLMCRHFLGARDVDQVTATTVDRLGIDLRVTTGELTDEYRVGFREKVVSTEDAKSELVKMFQEAWEREHDYAWTDELPPVIRYAEDILRKKG 369
The following BLAST results are available for this feature:
BLAST of NO05G03220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28087.15.600e-15077.01pyridoxamine 5 -phosphate oxidase-related fmn-bind... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03220NO05G03220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03220.1NO05G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03220.1.cds1NO05G03220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03220.1.cds2NO05G03220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03220.1.cds3NO05G03220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03220.1 ID=NO05G03220.1|Name=NO05G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
AGGAAAGCCAGCCAATGAGAAGACCAGCAAATACGGCATGGTTGGCGGCC
CTAGGAAGCTTGCTCCTGCTCCCTTGCGCCATGGCCTTCCTGGCCGTGCC
CCTCCGCAGCCGGAGCCGGCAACATCCTGGCGCTGTCCTGTCCTCTTCAC
CCTCCCCCTCCCGTCTCCATGCGGTTGCCACCGTCGCCCCCGTCCAAGCC
AACCCTAGCACAAGTAGCAGCACACCACAGGACCAACAGCAACAAGAACA
GCAGCAGCAGCCCGCGGGTGATGGGTTTGGAGGCGCCCACCCTATCAGGC
TGAGTATATCGGAAAGGGCAAGAACGGTGACGTACGTGGCGACGGCTGCT
ACGCTGGGCACATTCAGTGAGTCAGACACGACGCCTTTTGGAAGCTATGT
CGATTATATCTTGGACGATAAGGGCTGGCCCGTCCTCCTCCTCTCCGATC
AATCCCTCCACACGCAAAACATTAAAGCCAACCCCCAAGTCAGTCTCTTC
GTCCAAATGCCCAAAACCGGCAAAGGGGACACGAGCACGTCCGCCGCGCT
CTCCCGTGTCACGTTGATCGGTAACATCGTCCCCGTAGAGGCGGAGGAGC
TCCCGGCCATCCGCACGGCGTACAGCATCGTGCATTCCTACTCCGAGCGA
CTGGTGGAATCACCCAAGTTTTCCTTCTACAAGCTACAGCCGGAGCGCGT
GTACTTCGTGGGGGGCTTTGGCGTTTTGAGCAAGTGGATCCCAGTGGCTG
AGTACGAGACGGCCGTGCCTGACATCTTGGCCCATGAGATGTCGCGGATC
GTAGCGAGGATGAACGGGGAGCACGAGGCAGAGCTGCGGCTCATGTGTCG
CCATTTTCTTGGCGCGCAGGAGGTGGACCAGGTGACCGCCACCACAGTTG
ACAGGCTCGGGATTGACCTGAGGGTAACGTCCGGGGAATTAACGGACGAG
TACCGGGTCGGGTTTAGGGAAAAAGTGACAAGCACGGAGGACGCTAAGAG
CGAGCTGGTGAAGATGTTCCAAGAGGCGTGGGAGAGGGAGCATGATTATG
CCTGGATTGAGGAGTTACCGCCTGTGATTAGATATGCAGAGGATATTTTG
AGAAAGCGGGGTTAGAGGAAAGAAGAAAGGGAGGGAG
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protein sequence of NO05G03220.1

>NO05G03220.1-protein ID=NO05G03220.1-protein|Name=NO05G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MRRPANTAWLAALGSLLLLPCAMAFLAVPLRSRSRQHPGAVLSSSPSPSR
LHAVATVAPVQANPSTSSSTPQDQQQQEQQQQPAGDGFGGAHPIRLSISE
RARTVTYVATAATLGTFSESDTTPFGSYVDYILDDKGWPVLLLSDQSLHT
QNIKANPQVSLFVQMPKTGKGDTSTSAALSRVTLIGNIVPVEAEELPAIR
TAYSIVHSYSERLVESPKFSFYKLQPERVYFVGGFGVLSKWIPVAEYETA
VPDILAHEMSRIVARMNGEHEAELRLMCRHFLGAQEVDQVTATTVDRLGI
DLRVTSGELTDEYRVGFREKVTSTEDAKSELVKMFQEAWEREHDYAWIEE
LPPVIRYAEDILRKRG*
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mRNA from alignment at chr5:834723..836497+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03220.1 ID=NO05G03220.1|Name=NO05G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp|location=Sequence derived from alignment at chr5:834723..836497+ (Nannochloropsis oceanica)
AGGAAAGCCAGCCAATGAGAAGACCAGCAAATACGGCATGGTTGGCGGCC
CTAGGAAGCTTGCTCCTGCTCCCTTGCGCCATGGCCTTCCTGGCCGTGCC
CCTCCGCAGCCGGAGCCGGCAACATCCTGGCGGTACGTATACTATTATGC
ATGGTTGGCGAGGAAGGTGTGAGGCAGGAGGGAAGAGATGGGGGAGGACA
TTGGCTGTGGCTGTTGTGACGAAGACAAGCAGGCTCCTCTTTCTTCTGGT
TCCCAAGCCCCGCTGCTACCATCATATCGTGCACAGGCGGGCAGGGGTCA
ATAGGAGGGGGATGGATTGATGGTCCTGACGGAAACCCTTTGATAGAGCC
ACAAGCGTGGCATGTGTGTGGAGTTTCAGAAGCCCTGTTGTCGAAACCCG
ACGCTCTATTGCCCCCCCTTCTCCGGGAGAAAACAAAAGGGAATCACATT
ATGTATACCCATAACTCTACACCACGAGGAGGTTGATCGCGTCAATTTAC
TCCAAATGACAATCAATTCACCGTCGCCCTCCCCCTACTTCCTCTCTTTT
CCTCCCTTTATACAGCTGTCCTGTCCTCTTCACCCTCCCCCTCCCGTCTC
CATGCGGTTGCCACCGTCGCCCCCGTCCAAGCCAACCCTAGCACAAGTAG
CAGCACACCACAGGACCAACAGCAACAAGAACAGCAGCAGCAGCCCGCGG
GTGATGGGTTTGGAGGCGCCCACCCTATCAGGCTGAGTATATCGGAAAGG
GCAAGAACGGTGACGTACGTGGCGACGGCTGCTACGCTGGGCACATTCAG
TGAGTCAGACACGACGCCTTTTGGAAGCTATGTCGATTATATCTTGGACG
ATAAGGTGAGGAAGTAGGAGGTTTGGGAAGGATAGAGGGAAGTATAGAGG
GAAGGATAGAGGGAAGGATAGAGGGGGATGGTAATTTGTATTCCTCTGTT
ATGGCCAACTCAAAATTGTCAGACATGGCTTCGTGCATCGAGTTGTCCTC
GCTTCCTCACCATCTCACCCTCCCACCATCGCTCCCTTCCTCCCTTTCTT
TTCTCGCTAGGGCTGGCCCGTCCTCCTCCTCTCCGATCAATCCCTCCACA
CGCAAAACATTAAAGCCAACCCCCAAGTCAGTCTCTTCGTCCAAATGCCC
AAAACCGGCAAAGGGGACACGAGCACGTCCGCCGCGCTCTCCCGTGTCAC
GTTGATCGGTAACATCGTCCCCGTAGAGGCGGAGGAGCTCCCGGCCATCC
GCACGGCGTACAGCATCGTGCATTCCTACTCCGAGCGACTGGTGGAATCA
CCCAAGTTTTCCTTCTACAAGCTACAGCCGGAGCGCGTGTACTTCGTGGG
GGGCTTTGGCGTTTTGAGCAAGTGGATCCCAGTGGCTGAGTACGAGACGG
CCGTGCCTGACATCTTGGCCCATGAGATGTCGCGGATCGTAGCGAGGATG
AACGGGGAGCACGAGGCAGAGCTGCGGCTCATGTGTCGCCATTTTCTTGG
CGCGCAGGAGGTGGACCAGGTGACCGCCACCACAGTTGACAGGCTCGGGA
TTGACCTGAGGGTAACGTCCGGGGAATTAACGGACGAGTACCGGGTCGGG
TTTAGGGAAAAAGTGACAAGCACGGAGGACGCTAAGAGCGAGCTGGTGAA
GATGTTCCAAGAGGCGTGGGAGAGGGAGCATGATTATGCCTGGATTGAGG
AGTTACCGCCTGTGATTAGATATGCAGAGGATATTTTGAGAAAGCGGGGT
TAGAGGAAAGAAGAAAGGGAGGGAG
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Coding sequence (CDS) from alignment at chr5:834723..836497+

>NO05G03220.1 ID=NO05G03220.1|Name=NO05G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at chr5:834723..836497+ (Nannochloropsis oceanica)
ATGAGAAGACCAGCAAATACGGCATGGTTGGCGGCCCTAGGAAGCTTGCT
CCTGCTCCCTTGCGCCATGGCCTTCCTGGCCGTGCCCCTCCGCAGCCGGA
GCCGGCAACATCCTGGCGCTGTCCTGTCCTCTTCACCCTCCCCCTCCCGT
CTCCATGCGGTTGCCACCGTCGCCCCCGTCCAAGCCAACCCTAGCACAAG
TAGCAGCACACCACAGGACCAACAGCAACAAGAACAGCAGCAGCAGCCCG
CGGGTGATGGGTTTGGAGGCGCCCACCCTATCAGGCTGAGTATATCGGAA
AGGGCAAGAACGGTGACGTACGTGGCGACGGCTGCTACGCTGGGCACATT
CAGTGAGTCAGACACGACGCCTTTTGGAAGCTATGTCGATTATATCTTGG
ACGATAAGGGCTGGCCCGTCCTCCTCCTCTCCGATCAATCCCTCCACACG
CAAAACATTAAAGCCAACCCCCAAGTCAGTCTCTTCGTCCAAATGCCCAA
AACCGGCAAAGGGGACACGAGCACGTCCGCCGCGCTCTCCCGTGTCACGT
TGATCGGTAACATCGTCCCCGTAGAGGCGGAGGAGCTCCCGGCCATCCGC
ACGGCGTACAGCATCGTGCATTCCTACTCCGAGCGACTGGTGGAATCACC
CAAGTTTTCCTTCTACAAGCTACAGCCGGAGCGCGTGTACTTCGTGGGGG
GCTTTGGCGTTTTGAGCAAGTGGATCCCAGTGGCTGAGTACGAGACGGCC
GTGCCTGACATCTTGGCCCATGAGATGTCGCGGATCGTAGCGAGGATGAA
CGGGGAGCACGAGGCAGAGCTGCGGCTCATGTGTCGCCATTTTCTTGGCG
CGCAGGAGGTGGACCAGGTGACCGCCACCACAGTTGACAGGCTCGGGATT
GACCTGAGGGTAACGTCCGGGGAATTAACGGACGAGTACCGGGTCGGGTT
TAGGGAAAAAGTGACAAGCACGGAGGACGCTAAGAGCGAGCTGGTGAAGA
TGTTCCAAGAGGCGTGGGAGAGGGAGCATGATTATGCCTGGATTGAGGAG
TTACCGCCTGTGATTAGATATGCAGAGGATATTTTGAGAAAGCGGGGTTA
G
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Synonyms
Publications