NO05G02860.1, NO05G02860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02860.1
Unique NameNO05G02860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1790
Alignment locationchr5:749747..752193 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:749747..752193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02860.1 vs.
Match: EWM28148.1 (decaprenyl-diphosphate synthase subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 590.5 bits (1521), Expect = 4.700e-165
Identity = 315/435 (72.41%), Postives = 362/435 (83.22%), Query Frame = 0 
Query:    8 GVQGLQALVQHCSTGGRLMARPNPGTSYAAASHINGSSTLFDTRLYS--SEGSTRGIGQPS----WARTAADASINVLVNAVTRPGVDDPTLKVADPRQTGMEVEGGYDMQEDLALDLSRRPRPELSSSWVEAAQRVDPFKLVESDMRSLSAGIKSLLGTDHPVLEACAKYLFERDGGKKIRPTMVLLVARAAAAHAPRSGSNVNGHHASDPESPGPLPSQKRLAEITEMIHTASLFHDDVIDEADARRGVPSINKLYGNKMAILAGDFLLARASVSLARLRNVEVVELLSTVIEHLVKGEVMQSRPQALLDGSGATDDGRAALEYYLHKNYYKTGSLMANSCRAAVLLAGHGEALQAQAFAYGRHVGLAFQLVDDVLDFEQSSEILGKPALNDLRQGLATAPVLLAAQRFPREVAELIKRKFRSEGDVEKALEL 437
            G++ L+ LVQ CSTG R   +P+  +S  A S++N +    D   YS  S GST  I   S    WA+TAADASI+V+VNAVTRP +D+PT+KVA+PR+  ++ +   +++EDLALDL R+PR +L + W  AA+ VDPFK+VESDMRSLSAGIKSLLG+DHPVLEACAKY FE DGGKKIRPTMVLL++RA AAHAP  G N +    S  ES  PLPSQKRLAEITEMIHTASLFHDDVIDEAD RRGVPSINK+YGNKMAILAGDFLLARASVSLARLRN+EVVELLSTVIEHLVKGEVMQSRPQAL+DGSG  ++G+AALEYYLHKN+YKTGSLMANSCRAAVLLAG G+ALQ QAFAYGRHVGLAFQLVDDVLDFEQ+SE LGKPALNDLRQGLATAPVLLAA+ FP EV +++KRKF SEGDVE+  E+
Sbjct:    8 GLRRLRGLVQSCSTGFRGGVQPSLISSRTAISYVNRA---VDHIYYSHASIGSTTNIVHRSIRSGWAKTAADASIDVIVNAVTRPEIDEPTVKVAEPRRAIIKADQAGELEEDLALDLQRKPRLDLLAGWAGAARGVDPFKIVESDMRSLSAGIKSLLGSDHPVLEACAKYFFELDGGKKIRPTMVLLISRAVAAHAPAQGVNGSRAFTSTSESSTPLPSQKRLAEITEMIHTASLFHDDVIDEADERRGVPSINKIYGNKMAILAGDFLLARASVSLARLRNIEVVELLSTVIEHLVKGEVMQSRPQALVDGSGTGENGQAALEYYLHKNFYKTGSLMANSCRAAVLLAGGGDALQNQAFAYGRHVGLAFQLVDDVLDFEQTSETLGKPALNDLRQGLATAPVLLAARTFPDEVGDMVKRKFASEGDVERVREM 439
The following BLAST results are available for this feature:
BLAST of NO05G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28148.14.700e-16572.41decaprenyl-diphosphate synthase subunit 1 [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02860NO05G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02860.1NO05G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02860.1.cds1NO05G02860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02860.1.cds2NO05G02860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02860.1.cds3NO05G02860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02860.1.cds4NO05G02860.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02860.1.cds5NO05G02860.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02860.1 ID=NO05G02860.1|Name=NO05G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp
ACAGGACGATCGGGCCTCCACAACGCCACTAGACCGTGCACACGCCTTTC
AAACCCACTGCGTGGCGGATTCAAGGAAAGGTCTAGAGAGCCATGGCCCC
TACATGGAGAGGAGGGGTCCAAGGACTCCAAGCTCTCGTGCAGCATTGTT
CCACCGGCGGGCGGTTGATGGCCCGCCCCAACCCAGGAACCTCCTACGCT
GCGGCCTCACACATCAATGGCAGCTCCACGCTCTTTGATACGCGATTGTA
TTCTAGTGAAGGCAGCACACGGGGCATAGGCCAACCTAGTTGGGCTCGGA
CGGCCGCGGATGCCTCGATCAATGTTCTGGTAAACGCAGTAACACGGCCA
GGAGTGGACGATCCGACGCTGAAGGTGGCTGATCCTCGACAAACAGGGAT
GGAGGTGGAAGGGGGATATGATATGCAGGAAGACTTGGCCTTGGACTTGT
CTCGAAGACCTCGCCCGGAGCTGTCGTCGAGCTGGGTGGAAGCAGCACAG
AGGGTCGATCCATTCAAGTTGGTAGAAAGCGATATGAGAAGTCTATCTGC
CGGGATCAAGTCACTGCTGGGCACCGACCACCCCGTGCTAGAAGCCTGTG
CCAAATACCTCTTCGAGCGGGACGGGGGCAAAAAGATCCGTCCGACTATG
GTCTTACTAGTCGCACGGGCCGCCGCCGCGCATGCTCCCAGATCAGGGTC
CAATGTGAACGGTCATCACGCTTCAGATCCGGAGTCCCCTGGGCCCTTGC
CCTCCCAGAAACGCCTGGCAGAGATCACAGAGATGATTCATACAGCCAGC
CTGTTTCACGACGATGTCATTGATGAAGCCGATGCGCGGCGGGGCGTCCC
TTCCATCAACAAATTGTATGGAAACAAAATGGCGATTTTGGCGGGGGACT
TCCTATTGGCCCGCGCCTCGGTGAGCCTGGCCCGGCTGCGGAATGTCGAG
GTGGTAGAGCTTTTGTCTACGGTCATCGAGCACCTGGTCAAGGGTGAAGT
AATGCAATCGAGGCCTCAGGCCTTGCTGGATGGGAGTGGAGCTACGGATG
ATGGGCGGGCGGCGTTGGAGTACTATTTGCACAAGAATTACTACAAAACA
GGCTCGTTGATGGCAAATTCGTGCCGGGCCGCCGTGTTATTGGCCGGGCA
CGGAGAAGCTCTACAGGCGCAGGCGTTTGCGTATGGCAGGCATGTGGGAC
TGGCCTTTCAGTTGGTGGACGATGTGTTGGATTTCGAGCAGTCGTCTGAG
ATATTAGGCAAACCCGCGTTGAACGACCTGAGACAGGGCCTGGCGACGGC
CCCTGTCCTCTTGGCTGCACAAAGGTTCCCACGGGAGGTGGCGGAGCTGA
TTAAGCGCAAGTTTCGATCTGAGGGGGATGTGGAGAAGGCACTCGAGTTG
GTAGAACGCGGCGATGGGCTGCGGCAAGCGAAAGATCTAGCATCGGTACA
GGCGGAGCAGGCTATGGAAGCGGCTTTGACCATGCATCCTTCCCCCGCTC
GGGACGGTCTTATCAAGCTGGCCTCGCTCGTTGTACACCGCACGAGTTAA
ACCATAGAGGCACCAGACGGGAAGACCGGAATAACCTGGTGAAGCTGGTG
GTAGGCAGGGGGGAGGAATCGGGGAGAGTGCCATATCTTGAGAGAGGGGA
CCAAATGACTGTTGATAACCTGCCCATTGGCTTTTCCTCCTTGTTGCCGC
CGCCAGCGCAACACCCATCCACTCACTCACACAAATCTTTCAAATGTATC
AAACAAAGATAGAACGGAAACAGCTACCATCACATGATCA
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protein sequence of NO05G02860.1

>NO05G02860.1-protein ID=NO05G02860.1-protein|Name=NO05G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MAPTWRGGVQGLQALVQHCSTGGRLMARPNPGTSYAAASHINGSSTLFDT
RLYSSEGSTRGIGQPSWARTAADASINVLVNAVTRPGVDDPTLKVADPRQ
TGMEVEGGYDMQEDLALDLSRRPRPELSSSWVEAAQRVDPFKLVESDMRS
LSAGIKSLLGTDHPVLEACAKYLFERDGGKKIRPTMVLLVARAAAAHAPR
SGSNVNGHHASDPESPGPLPSQKRLAEITEMIHTASLFHDDVIDEADARR
GVPSINKLYGNKMAILAGDFLLARASVSLARLRNVEVVELLSTVIEHLVK
GEVMQSRPQALLDGSGATDDGRAALEYYLHKNYYKTGSLMANSCRAAVLL
AGHGEALQAQAFAYGRHVGLAFQLVDDVLDFEQSSEILGKPALNDLRQGL
ATAPVLLAAQRFPREVAELIKRKFRSEGDVEKALELVERGDGLRQAKDLA
SVQAEQAMEAALTMHPSPARDGLIKLASLVVHRTS*
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mRNA from alignment at chr5:749747..752193+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02860.1 ID=NO05G02860.1|Name=NO05G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2447bp|location=Sequence derived from alignment at chr5:749747..752193+ (Nannochloropsis oceanica)
ACAGGACGATCGGGCCTCCACAACGCCACTAGACCGTGCACACGCCTTTC
AAACCCACTGCGTGGCGGATTCAAGGAAAGGTCTAGAGAGCCATGGCCCC
TACATGGAGAGGAGGGGTCCAAGGACTCCAAGCTCTCGTGCAGCATTGTT
CCACCGGCGGGCGGTTGATGGCCCGCCCCAACCCAGGAACCTCCTACGCT
GCGGCCTCACACATCAATGGCAGCTCCACGCTCTTTGATACGCGATTGTA
TTCTAGTGAAGGCAGCACACGGGGCATAGGTAAGCCTAGAACAGCTAGCA
CCCTGAACAGTAGCGAGCCGAAATACATATCTCCTGCCTCTTTCTTGTCC
TTTGCCCCATCTGGGCACATTGCCACGACCTAACGGACCAGTGCCTACCT
CTCTCTAGTAAAGAAGAGTGCCCATTATGTAGAACATGAAAATATGCCAC
ATTCTCAAAACCACGATTTATCTTTCACAACAAATGTCTTCAATCTTCAA
TCCCCTCTCATCTGTGTCCCTGCGCAGGCCAACCTAGTTGGGCTCGGACG
GCCGCGGATGCCTCGATCAATGTTCTGGTAAACGCAGTAACACGGCCAGG
AGTGGACGATCCGACGCTGAAGGTGGCTGATCCTCGACAAACAGGGATGG
AGGTGGAAGGGGGATATGATATGCAGGAAGACTTGGCCTTGGACTTGTCT
CGAAGACCTCGCCCGGAGCTGTCGTCGAGCTGGGTGGAAGCAGCACAGAG
GGTCGATCCATTCAAGGTGCGCTAAGCTACGATCCAAATCGCTGCGATGT
CTTCTACAACGTATCACTCATCTTCTCTCCTTCCCTCATTTCCTTTCAGT
TGGTAGAAAGCGATATGAGAAGTCTATCTGCCGGGATCAAGGTATGTCTA
TGACTTTGCAATCCCGCGCTGACACCATGACGAAGCGAGAAAGAGTATGA
GAGGAGTTACAGCAATTTATTTTGTTTGCCATAGCCCTAGGCTCGATCCC
ACGTAAAAGTCGTGCTGACTCTTGCCCCTTTTTCCTCATCCTCTCTCTCC
CCCACTGTCCCCCACTCCCTCCAGTCACTGCTGGGCACCGACCACCCCGT
GCTAGAAGCCTGTGCCAAATACCTCTTCGAGCGGGACGGGGGCAAAAAGA
TCCGTCCGACTATGGTCTTACTAGTCGCACGGGCCGCCGCCGCGCATGCT
CCCAGATCAGGGTCCAATGTGAACGGTCATCACGCTTCAGATCCGGAGTC
CCCTGGGCCCTTGCCCTCCCAGAAACGCCTGGCAGAGATCACAGAGATGA
TTCATACAGCCAGCCTGTTTCACGACGATGTCATTGATGAAGCCGATGCG
CGGCGGGGCGTCCCTTCCATCAACAAATTGTATGGAAACAAAATGGCGAT
TTTGGCGGGGGACTTCCTATTGGCCCGCGCCTCGGTGAGCCTGGCCCGGC
TGCGGAATGTCGAGGTGGTAGAGCTTTTGTCTACGGTCATCGAGCACCTG
GTCAAGGGTGAAGTAATGCAATCGAGGCCTCAGGCCTTGCTGGATGGGAG
TGGAGCTACGGATGATGGGCGGGCGGCGTTGGAGTACTATTTGCACAAGA
ATTACTACAAAACAGGCTCGTTGATGGCAAATTCGTGCCGGGCCGCCGTG
TTATTGGCCGGGCACGGAGAAGCTCTACAGGCGCAGGCGTTTGCGTATGG
CAGGCATGTGGGACTGGCCTTTCAGTTGGTGGACGATGTGTTGGATTTCG
AGCAGTCGTCTGAGATATTAGGCAAACCCGCGTTGAACGACCTGAGACAG
GGCCTGGCGACGGCCCCTGTCCTCTTGGCTGCACAAAGGTTCCCACGGGA
GGTGGCGGAGCTGATTAAGCGCAAGTTTCGATCTGAGGGGGATGTGGAGA
AGGTAAGGAGAGGAAGAAAAGGACGTGGTGGTGCGGTTTGTCGTCTCTTG
AAAAAGTGGATGCATCTTACGCACGCCTCTTCTTTTCTGCGTGACATTTT
ATACGTATTGAAAATACTTTTCATTCTCCAATTGTCTTTCTACAGGCACT
CGAGTTGGTAGAACGCGGCGATGGGCTGCGGCAAGCGAAAGATCTAGCAT
CGGTACAGGCGGAGCAGGCTATGGAAGCGGCTTTGACCATGCATCCTTCC
CCCGCTCGGGACGGTCTTATCAAGCTGGCCTCGCTCGTTGTACACCGCAC
GAGTTAAACCATAGAGGCACCAGACGGGAAGACCGGAATAACCTGGTGAA
GCTGGTGGTAGGCAGGGGGGAGGAATCGGGGAGAGTGCCATATCTTGAGA
GAGGGGACCAAATGACTGTTGATAACCTGCCCATTGGCTTTTCCTCCTTG
TTGCCGCCGCCAGCGCAACACCCATCCACTCACTCACACAAATCTTTCAA
ATGTATCAAACAAAGATAGAACGGAAACAGCTACCATCACATGATCA
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Coding sequence (CDS) from alignment at chr5:749747..752193+

>NO05G02860.1 ID=NO05G02860.1|Name=NO05G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr5:749747..752193+ (Nannochloropsis oceanica)
ATGGCCCCTACATGGAGAGGAGGGGTCCAAGGACTCCAAGCTCTCGTGCA
GCATTGTTCCACCGGCGGGCGGTTGATGGCCCGCCCCAACCCAGGAACCT
CCTACGCTGCGGCCTCACACATCAATGGCAGCTCCACGCTCTTTGATACG
CGATTGTATTCTAGTGAAGGCAGCACACGGGGCATAGGCCAACCTAGTTG
GGCTCGGACGGCCGCGGATGCCTCGATCAATGTTCTGGTAAACGCAGTAA
CACGGCCAGGAGTGGACGATCCGACGCTGAAGGTGGCTGATCCTCGACAA
ACAGGGATGGAGGTGGAAGGGGGATATGATATGCAGGAAGACTTGGCCTT
GGACTTGTCTCGAAGACCTCGCCCGGAGCTGTCGTCGAGCTGGGTGGAAG
CAGCACAGAGGGTCGATCCATTCAAGTTGGTAGAAAGCGATATGAGAAGT
CTATCTGCCGGGATCAAGTCACTGCTGGGCACCGACCACCCCGTGCTAGA
AGCCTGTGCCAAATACCTCTTCGAGCGGGACGGGGGCAAAAAGATCCGTC
CGACTATGGTCTTACTAGTCGCACGGGCCGCCGCCGCGCATGCTCCCAGA
TCAGGGTCCAATGTGAACGGTCATCACGCTTCAGATCCGGAGTCCCCTGG
GCCCTTGCCCTCCCAGAAACGCCTGGCAGAGATCACAGAGATGATTCATA
CAGCCAGCCTGTTTCACGACGATGTCATTGATGAAGCCGATGCGCGGCGG
GGCGTCCCTTCCATCAACAAATTGTATGGAAACAAAATGGCGATTTTGGC
GGGGGACTTCCTATTGGCCCGCGCCTCGGTGAGCCTGGCCCGGCTGCGGA
ATGTCGAGGTGGTAGAGCTTTTGTCTACGGTCATCGAGCACCTGGTCAAG
GGTGAAGTAATGCAATCGAGGCCTCAGGCCTTGCTGGATGGGAGTGGAGC
TACGGATGATGGGCGGGCGGCGTTGGAGTACTATTTGCACAAGAATTACT
ACAAAACAGGCTCGTTGATGGCAAATTCGTGCCGGGCCGCCGTGTTATTG
GCCGGGCACGGAGAAGCTCTACAGGCGCAGGCGTTTGCGTATGGCAGGCA
TGTGGGACTGGCCTTTCAGTTGGTGGACGATGTGTTGGATTTCGAGCAGT
CGTCTGAGATATTAGGCAAACCCGCGTTGAACGACCTGAGACAGGGCCTG
GCGACGGCCCCTGTCCTCTTGGCTGCACAAAGGTTCCCACGGGAGGTGGC
GGAGCTGATTAAGCGCAAGTTTCGATCTGAGGGGGATGTGGAGAAGGCAC
TCGAGTTGGTAGAACGCGGCGATGGGCTGCGGCAAGCGAAAGATCTAGCA
TCGGTACAGGCGGAGCAGGCTATGGAAGCGGCTTTGACCATGCATCCTTC
CCCCGCTCGGGACGGTCTTATCAAGCTGGCCTCGCTCGTTGTACACCGCA
CGAGTTAA
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Synonyms
Publications