NO05G02740.2, NO05G02740.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02740.2
Unique NameNO05G02740.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1684
Alignment locationchr5:721062..722969 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:721062..722969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02740.2 vs.
Match: GAX15163.1 (hypothetical protein FisN_12Lh136 [Fistulifera solaris])

HSP 1 Score: 235.0 bits (598), Expect = 3.100e-58
Identity = 126/297 (42.42%), Postives = 179/297 (60.27%), Query Frame = 0 
Query:    6 PGSIDGVVVLGMHRSGTSMVTGLLQE-MGFHLGEPDDILGAREGENDKGFFERLQVVVQNDKLMKEQDVNWSLNIFNFNHLLALEHALTSKVDFGLGRAALTFFNNPVHHPWAVKDPRLCFTLKFWLPFWRTPPAVLFVYRHPMEVAKSLIHRGNEFGLPRALYLWIAYNRLAIQNSQGLCRVVISNAALIQDG-AGVLGMVYEQLRGCGVDV-PRKVTMKDINSFIDHSLHHQTQNHAKECQPTIRK-------SWKSE-AAGDHEKARQNDAYAHALRVYCAMENGSAFSPSFEW 292
            P  ++GV+VLGMHRSGTSM++GL+    G+H G P  ++G+   +N+KGFFERL VV+QND+ M  Q V WS N+ N++  +AL    + K+ F  G+ AL F N+  + PW  KDPR+C TLK WLP     PA+LF YR+P+EVA SL  R   F L   L LWI YN  AIQNS+GLCRV  SN A++ D    V  +V E    CGV   PR++T +D+N F+D SL H  + H  E +  +          + S+   G   + R+ + Y  A++++C  ++G+A+   +EW
Sbjct:  160 PAGVNGVIVLGMHRSGTSMLSGLMVTGSGYHTGGP--LIGSAF-DNEKGFFERLDVVLQNDEFMNSQKVWWSSNVLNYHDDVALAEKESGKITFKKGKTALAFLNDSNNAPWLQKDPRMCITLKTWLPLLNNVPAILFTYRNPLEVAMSLKKREKNFTLEHGLRLWIIYNMRAIQNSEGLCRVYSSNDAILNDTLEEVKNIVIELTNKCGVPAPPRQITQEDVNKFVDPSLQH-NKGHQHEGEKVLADYDGCKVYDYVSDFPEGSANRLREKELYIKAMKIHCDFKSGAAYEDDYEW 452
The following BLAST results are available for this feature:
BLAST of NO05G02740.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX15163.13.100e-5842.42hypothetical protein FisN_12Lh136 [Fistulifera sol... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02740NO05G02740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02740.2NO05G02740.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02740.2.cds1NO05G02740.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02740.2.cds2NO05G02740.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02740.2 ID=NO05G02740.2|Name=NO05G02740.2|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp
CCGGAGAAGTCGAGGTCTAGTTATTCGCTGTGGAATGGGGGGATGTCACC
GCTCTGGGCATAGCTCCATGGTGGAGGAAGATATTATACCTCTCCGAGGC
TGAGGATGGATGGAATCAGCTCCACGGTGGACTAAGTAAGGAGGGCAGCT
CATGTTTGAGGGAAGAAGGGCACTTGAAGAAGTGTAAGCGATGGTTGTTC
AGAAGTTCTTCATCCCGTCGCTCGCCGAGCACACAACCCATTACGTGGGT
CAATATGATGCCTTGATATGTCTCTGTTGACCACTCGCTAACACACACAC
TTAAGCAATCGCAGGCTTGTTACACGAGTCATGGCATACGGCTCGTGGCC
GATAAAAAATAACGGGCCTCACCCATACAACAAGGTAACAAGTGGCAAAC
CAAGGTAAGTTTTCAGCACCCTTTGACCCACCATTCTCTGATCTTTGCGG
AGGCCCGCTCAGTCTCCATTATACTTCCTACTATTGACCAAACCAGACAG
CGACGGGTTTGGCCTGCGGTGGTGTTGCTTGCTTTCGTGCTCTATGGCGC
TTTCGTCTACACCCGCGACAGCGCCGGTCACGCTGCTATAGATGCGCGGG
GCCAGCGACAATCTCTAAATCTCCAGCCCAAGGCCGGCGGTATGTGGCAG
CCCACACCAGGCAGCATCGATGGCGTCGTGGTCCTTGGCATGCACCGCTC
CGGAACTTCCATGGTGACGGGTTTGCTGCAGGAAATGGGTTTCCATTTGG
GAGAGCCTGACGATATTCTGGGAGCGAGGGAGGGGGAAAACGACAAGGGC
TTCTTCGAGCGGCTCCAAGTTGTCGTGCAGAACGATAAGCTGATGAAGGA
ACAAGATGTTAACTGGTCTCTCAACATATTTAACTTCAACCACCTCCTGG
CTTTGGAACACGCTCTAACGAGCAAGGTAGACTTCGGACTTGGACGCGCT
GCTTTGACCTTTTTCAACAACCCTGTACATCATCCATGGGCCGTCAAAGA
CCCGAGGCTTTGCTTCACTTTGAAATTTTGGCTGCCCTTCTGGAGGACGC
CCCCTGCCGTGCTCTTCGTATACCGGCACCCAATGGAAGTGGCCAAATCC
TTGATTCATCGTGGGAACGAGTTTGGGCTGCCCCGCGCACTATATCTCTG
GATAGCGTACAACCGCCTGGCGATTCAAAACTCTCAAGGACTTTGCCGCG
TTGTCATTTCGAATGCGGCGCTCATCCAGGACGGGGCGGGCGTGCTAGGC
ATGGTCTACGAGCAGCTCCGGGGCTGTGGTGTCGATGTTCCCCGGAAGGT
CACCATGAAAGACATCAACAGCTTCATTGACCATAGCCTGCACCATCAGA
CGCAGAATCACGCAAAGGAGTGCCAGCCCACGATCCGAAAGTCATGGAAG
AGCGAGGCTGCCGGTGATCATGAAAAGGCGCGACAGAATGATGCGTATGC
GCATGCTCTGAGGGTGTACTGCGCCATGGAGAATGGCTCGGCCTTTTCTC
CTTCATTTGAGTGGGAGGACCTTGGAGACACAGCACCATCGTAATTTTCA
TATAGGCATGGAAGACGAACTTCAGACAAAATCAAAAGTAGATGAGAAAG
AATCGATGCATATAGTGTATTAAGTAAAAAATAGAAAATAGAAAAGGGAA
AAATTTGATTCAGATGAGAAAGAATCGATGCATA
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protein sequence of NO05G02740.2

>NO05G02740.2-protein ID=NO05G02740.2-protein|Name=NO05G02740.2|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MWQPTPGSIDGVVVLGMHRSGTSMVTGLLQEMGFHLGEPDDILGAREGEN
DKGFFERLQVVVQNDKLMKEQDVNWSLNIFNFNHLLALEHALTSKVDFGL
GRAALTFFNNPVHHPWAVKDPRLCFTLKFWLPFWRTPPAVLFVYRHPMEV
AKSLIHRGNEFGLPRALYLWIAYNRLAIQNSQGLCRVVISNAALIQDGAG
VLGMVYEQLRGCGVDVPRKVTMKDINSFIDHSLHHQTQNHAKECQPTIRK
SWKSEAAGDHEKARQNDAYAHALRVYCAMENGSAFSPSFEWEDLGDTAPS
*
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mRNA from alignment at chr5:721062..722969-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02740.2 ID=NO05G02740.2|Name=NO05G02740.2|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at chr5:721062..722969- (Nannochloropsis oceanica)
CCGGAGAAGTCGAGGTCTAGTTATTCGCTGTGGAATGGGGGGATGTCACC
GCTCTGGGCATAGCTCCATGGTGGAGGAAGATATTATACCTCTCCGAGGC
TGAGGATGGATGGAATCAGCTCCACGGTGGACTAAGTAAGGAGGGCAGCT
CATGTTTGAGGGAAGAAGGGCACTTGAAGAAGTGTAAGCGATGGTTGTTC
AGAAGTTCTTCATCCCGTCGCTCGCCGAGCACACAACCCATTACGTGGGT
CAATATGATGCCTTGATATGTCTCTGTTGACCACTCGCTAACACACACAC
TTAAGCAATCGCAGGCTTGTTACACGAGTCATGGCATACGGCTCGTGGCC
GATAAAAAATAACGGGCCTCACCCATACAACAAGGTAACAAGTGGCAAAC
CAAGGTAAGTTTTCAGCACCCTTTGACCCACCATTCTCTGATCTTTGCGG
AGGCCCGCTCAGTCTCCATTATACTTCCTACTATTGACCAAACCAGACAG
CGACGGGTTTGGCCTGCGGTGGTGTTGCTTGCTTTCGTGCTCTATGGCGC
TTTCGTCTACACCCGCGACAGCGCCGGTCACGCTGCTATAGATGCGCGGG
GCCAGCGACAATCTCTAAATCTCCAGCCCAAGGCCGGCGGTATGTGGCAG
CCCACACCAGGCAGCATCGATGGCGTCGTGGTCCTTGGCATGCACCGCTC
CGGAACTTCCATGGTGACGGGTTTGCTGCAGGAAATGGGTTTCCATTTGG
GAGAGCCTGACGATATTCTGGGAGCGAGGGAGGGGGAAAACGACAAGGGC
TTCTTCGAGCGGCTCCAAGTTGTCGTGCAGAACGATAAGCTGATGAAGGA
ACAAGATGTTAACTGGTCTCTCAACATATTTAACTTCAACCACCTCCTGG
CTTTGGTAGGTGAAAGCATTCCATGTGTCAAAACGAAATCTGCGATTCGT
ATTATCTCTTTCCCCTTCAGCAGCTCAAATTAAGACACGTTTCATCCCCT
TCCTGTTAAGGTCACAACAAAATTTATACCCATTTGTCACGGTACCGCGT
TTCCGCCCACCGCTCTTTTTTCATGCAATACATACATGTCCCTTGCAACC
TACTAAAACCCCTTTTCCTTTTCATGCAGGAACACGCTCTAACGAGCAAG
GTAGACTTCGGACTTGGACGCGCTGCTTTGACCTTTTTCAACAACCCTGT
ACATCATCCATGGGCCGTCAAAGACCCGAGGCTTTGCTTCACTTTGAAAT
TTTGGCTGCCCTTCTGGAGGACGCCCCCTGCCGTGCTCTTCGTATACCGG
CACCCAATGGAAGTGGCCAAATCCTTGATTCATCGTGGGAACGAGTTTGG
GCTGCCCCGCGCACTATATCTCTGGATAGCGTACAACCGCCTGGCGATTC
AAAACTCTCAAGGACTTTGCCGCGTTGTCATTTCGAATGCGGCGCTCATC
CAGGACGGGGCGGGCGTGCTAGGCATGGTCTACGAGCAGCTCCGGGGCTG
TGGTGTCGATGTTCCCCGGAAGGTCACCATGAAAGACATCAACAGCTTCA
TTGACCATAGCCTGCACCATCAGACGCAGAATCACGCAAAGGAGTGCCAG
CCCACGATCCGAAAGTCATGGAAGAGCGAGGCTGCCGGTGATCATGAAAA
GGCGCGACAGAATGATGCGTATGCGCATGCTCTGAGGGTGTACTGCGCCA
TGGAGAATGGCTCGGCCTTTTCTCCTTCATTTGAGTGGGAGGACCTTGGA
GACACAGCACCATCGTAATTTTCATATAGGCATGGAAGACGAACTTCAGA
CAAAATCAAAAGTAGATGAGAAAGAATCGATGCATATAGTGTATTAAGTA
AAAAATAGAAAATAGAAAAGGGAAAAATTTGATTCAGATGAGAAAGAATC
GATGCATA
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Coding sequence (CDS) from alignment at chr5:721062..722969-

>NO05G02740.2 ID=NO05G02740.2|Name=NO05G02740.2|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr5:721062..722969- (Nannochloropsis oceanica)
ATGTGGCAGCCCACACCAGGCAGCATCGATGGCGTCGTGGTCCTTGGCAT
GCACCGCTCCGGAACTTCCATGGTGACGGGTTTGCTGCAGGAAATGGGTT
TCCATTTGGGAGAGCCTGACGATATTCTGGGAGCGAGGGAGGGGGAAAAC
GACAAGGGCTTCTTCGAGCGGCTCCAAGTTGTCGTGCAGAACGATAAGCT
GATGAAGGAACAAGATGTTAACTGGTCTCTCAACATATTTAACTTCAACC
ACCTCCTGGCTTTGGAACACGCTCTAACGAGCAAGGTAGACTTCGGACTT
GGACGCGCTGCTTTGACCTTTTTCAACAACCCTGTACATCATCCATGGGC
CGTCAAAGACCCGAGGCTTTGCTTCACTTTGAAATTTTGGCTGCCCTTCT
GGAGGACGCCCCCTGCCGTGCTCTTCGTATACCGGCACCCAATGGAAGTG
GCCAAATCCTTGATTCATCGTGGGAACGAGTTTGGGCTGCCCCGCGCACT
ATATCTCTGGATAGCGTACAACCGCCTGGCGATTCAAAACTCTCAAGGAC
TTTGCCGCGTTGTCATTTCGAATGCGGCGCTCATCCAGGACGGGGCGGGC
GTGCTAGGCATGGTCTACGAGCAGCTCCGGGGCTGTGGTGTCGATGTTCC
CCGGAAGGTCACCATGAAAGACATCAACAGCTTCATTGACCATAGCCTGC
ACCATCAGACGCAGAATCACGCAAAGGAGTGCCAGCCCACGATCCGAAAG
TCATGGAAGAGCGAGGCTGCCGGTGATCATGAAAAGGCGCGACAGAATGA
TGCGTATGCGCATGCTCTGAGGGTGTACTGCGCCATGGAGAATGGCTCGG
CCTTTTCTCCTTCATTTGAGTGGGAGGACCTTGGAGACACAGCACCATCG
TAA
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Synonyms
Publications