NO05G02730.1, NO05G02730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02730.1
Unique NameNO05G02730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1328
Alignment locationchr5:719707..721034 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:719707..721034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02730.1 vs.
Match: EWM28140.1 (nad-dependent epimerase dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 345.5 bits (885), Expect = 2.000e-91
Identity = 199/360 (55.28%), Postives = 248/360 (68.89%), Query Frame = 0 
Query:   16 LLPLLLLFLC-PAAIAFSMSSLP------STSSLFVFGLGYVGSRLAQKL--APAWEVGGTVSSLSSSLPFSPQVREWEFDARPSNPTLLDAAALAALRQATHVLVTIPPVDGTDMVVKLYGSHLSNQCPRLRWVGYLSSTSVYGDRGGDLVSEEDEVRPVTSKGVARVEAEAAWMELVRQVPSQLSHLRIFRLAGIYGPGRNALETMRQGLQGAQAGPDISSLDGDRWVSRIHVEDIVRVLQCSMEDDSRDGGQVEIYNVADDQPASRLEVFSFAAALLGNKGAANLIANPPGFS------PSVTPPS-SRRARPPESKRVANNKIKELLLGGSAASSSSTSPLRYPTYEEGLRHICEE 360
            + PLLL  LC   A  F     P      STS LFVFGLGYVG+RLA+++  +P W V GTV SLS +    P VR +EFDA P+ P LLD   L  LR+ATHVL++IPP+DG D VV LY S L   C  LRW+GYLSSTSVYGDR G  V+E+DEVRPVTSK +ARV AE AWMEL + +P +    R+FRLAGIYGP RNAL T+R+G+ GAQ G  +  LDGD +VSRIHVEDI+R+L+CSM++    G +VEIYNVAD++PASRLEVFSFAA LLG++   +   + P  S      PS +P + SRRAR PESKRV+N K+++LL    AA +S    LR+PT+ EGL  I ++
Sbjct:    1 MTPLLLFLLCITPASGFGAPRAPLISGQESTSRLFVFGLGYVGARLAREMDESPGWAVAGTVISLSLASSIPPSVRVFEFDACPAAPKLLDPQGLCFLRRATHVLISIPPMDGYDPVVDLYRSELLKNCACLRWLGYLSSTSVYGDRQGAWVTEDDEVRPVTSKALARVRAEQAWMELRQCMPDRPLLCRVFRLAGIYGPDRNALTTLRKGMSGAQGGGSLPRLDGDSFVSRIHVEDIIRILRCSMDETVETGTEVEIYNVADNRPASRLEVFSFAARLLGDESILSNYHHAPSASTNAHHFPSTSPRALSRRARRPESKRVSNKKMRKLLSESKAALASLN--LRHPTFIEGLCSILKD 358
The following BLAST results are available for this feature:
BLAST of NO05G02730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28140.12.000e-9155.28nad-dependent epimerase dehydratase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02730NO05G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02730.1NO05G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02730.1.cds1NO05G02730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02730.1 ID=NO05G02730.1|Name=NO05G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1328bp
GAGAGACTCTTTGAATCGTTACGTCAGCAACTTTCCCATCTTGAAAGCAA
GCACTCATTAACATAACCACAAGCACATTCTACAAGAGGGATGCATGAAA
CAAGGACGTCAACGCTTGCCTGACCTGACAGCCACTATGCTTCTTCCCCT
TCTGCTCCTCTTCCTGTGCCCTGCGGCTATTGCGTTCAGCATGTCCTCGC
TTCCTTCAACCTCCTCCCTCTTCGTGTTTGGCCTGGGGTACGTGGGAAGC
CGCTTGGCGCAGAAACTGGCACCAGCGTGGGAGGTTGGCGGCACTGTGTC
GTCTTTGTCTTCCTCGCTACCCTTTTCCCCCCAGGTACGTGAGTGGGAAT
TCGATGCCAGGCCGTCAAATCCCACGCTCCTGGACGCTGCGGCGCTGGCG
GCGTTGCGACAAGCCACGCACGTCCTAGTGACCATCCCACCTGTAGACGG
CACGGACATGGTGGTGAAACTGTATGGCTCCCATCTATCAAACCAATGCC
CCCGTTTGCGCTGGGTTGGGTACTTAAGCTCCACGAGTGTCTATGGCGAT
CGAGGTGGTGACTTGGTATCAGAGGAGGATGAAGTGCGGCCCGTTACGTC
CAAGGGTGTGGCGCGTGTGGAGGCCGAGGCAGCGTGGATGGAGCTGGTTC
GGCAGGTACCAAGCCAGCTCTCACATTTACGTATTTTCCGGTTAGCTGGT
ATCTATGGCCCGGGAAGGAACGCTTTGGAGACGATGAGGCAGGGGTTGCA
GGGGGCGCAAGCAGGGCCAGATATCTCAAGTCTTGATGGCGACCGGTGGG
TGAGCCGCATTCATGTCGAGGATATAGTTCGAGTGCTCCAGTGTTCTATG
GAAGACGACAGCCGGGATGGTGGCCAAGTGGAGATCTATAACGTGGCTGA
CGACCAGCCTGCCTCTCGCCTGGAGGTTTTTTCCTTCGCGGCTGCTTTGC
TGGGCAATAAAGGAGCTGCCAATCTGATTGCTAACCCACCAGGATTCTCC
CCGTCCGTAACCCCTCCCTCCTCCCGTCGTGCCCGGCCTCCAGAGAGCAA
GCGGGTGGCTAACAACAAAATAAAGGAGCTTCTACTAGGTGGCAGCGCGG
CATCCTCTTCCTCGACGTCGCCTTTACGATACCCCACATATGAGGAGGGA
TTGAGGCACATATGCGAGGAAATGGACGTGTGGAGATACTAAGCTGCCTA
TTGTCAACATTAGGCTGGGACACCAAAATAGTGTGTACAATGGAATGAAT
TGAGGGTCTTCCACCTCCGGGCATAAGAAACGGTGCTAAGCATCATTTCT
TTCCCTGAATCAAATTTTTCCCTTTTCT
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protein sequence of NO05G02730.1

>NO05G02730.1-protein ID=NO05G02730.1-protein|Name=NO05G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MKQGRQRLPDLTATMLLPLLLLFLCPAAIAFSMSSLPSTSSLFVFGLGYV
GSRLAQKLAPAWEVGGTVSSLSSSLPFSPQVREWEFDARPSNPTLLDAAA
LAALRQATHVLVTIPPVDGTDMVVKLYGSHLSNQCPRLRWVGYLSSTSVY
GDRGGDLVSEEDEVRPVTSKGVARVEAEAAWMELVRQVPSQLSHLRIFRL
AGIYGPGRNALETMRQGLQGAQAGPDISSLDGDRWVSRIHVEDIVRVLQC
SMEDDSRDGGQVEIYNVADDQPASRLEVFSFAAALLGNKGAANLIANPPG
FSPSVTPPSSRRARPPESKRVANNKIKELLLGGSAASSSSTSPLRYPTYE
EGLRHICEEMDVWRY*
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mRNA from alignment at chr5:719707..721034+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02730.1 ID=NO05G02730.1|Name=NO05G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1328bp|location=Sequence derived from alignment at chr5:719707..721034+ (Nannochloropsis oceanica)
GAGAGACTCTTTGAATCGTTACGTCAGCAACTTTCCCATCTTGAAAGCAA
GCACTCATTAACATAACCACAAGCACATTCTACAAGAGGGATGCATGAAA
CAAGGACGTCAACGCTTGCCTGACCTGACAGCCACTATGCTTCTTCCCCT
TCTGCTCCTCTTCCTGTGCCCTGCGGCTATTGCGTTCAGCATGTCCTCGC
TTCCTTCAACCTCCTCCCTCTTCGTGTTTGGCCTGGGGTACGTGGGAAGC
CGCTTGGCGCAGAAACTGGCACCAGCGTGGGAGGTTGGCGGCACTGTGTC
GTCTTTGTCTTCCTCGCTACCCTTTTCCCCCCAGGTACGTGAGTGGGAAT
TCGATGCCAGGCCGTCAAATCCCACGCTCCTGGACGCTGCGGCGCTGGCG
GCGTTGCGACAAGCCACGCACGTCCTAGTGACCATCCCACCTGTAGACGG
CACGGACATGGTGGTGAAACTGTATGGCTCCCATCTATCAAACCAATGCC
CCCGTTTGCGCTGGGTTGGGTACTTAAGCTCCACGAGTGTCTATGGCGAT
CGAGGTGGTGACTTGGTATCAGAGGAGGATGAAGTGCGGCCCGTTACGTC
CAAGGGTGTGGCGCGTGTGGAGGCCGAGGCAGCGTGGATGGAGCTGGTTC
GGCAGGTACCAAGCCAGCTCTCACATTTACGTATTTTCCGGTTAGCTGGT
ATCTATGGCCCGGGAAGGAACGCTTTGGAGACGATGAGGCAGGGGTTGCA
GGGGGCGCAAGCAGGGCCAGATATCTCAAGTCTTGATGGCGACCGGTGGG
TGAGCCGCATTCATGTCGAGGATATAGTTCGAGTGCTCCAGTGTTCTATG
GAAGACGACAGCCGGGATGGTGGCCAAGTGGAGATCTATAACGTGGCTGA
CGACCAGCCTGCCTCTCGCCTGGAGGTTTTTTCCTTCGCGGCTGCTTTGC
TGGGCAATAAAGGAGCTGCCAATCTGATTGCTAACCCACCAGGATTCTCC
CCGTCCGTAACCCCTCCCTCCTCCCGTCGTGCCCGGCCTCCAGAGAGCAA
GCGGGTGGCTAACAACAAAATAAAGGAGCTTCTACTAGGTGGCAGCGCGG
CATCCTCTTCCTCGACGTCGCCTTTACGATACCCCACATATGAGGAGGGA
TTGAGGCACATATGCGAGGAAATGGACGTGTGGAGATACTAAGCTGCCTA
TTGTCAACATTAGGCTGGGACACCAAAATAGTGTGTACAATGGAATGAAT
TGAGGGTCTTCCACCTCCGGGCATAAGAAACGGTGCTAAGCATCATTTCT
TTCCCTGAATCAAATTTTTCCCTTTTCT
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Coding sequence (CDS) from alignment at chr5:719707..721034+

>NO05G02730.1 ID=NO05G02730.1|Name=NO05G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr5:719707..721034+ (Nannochloropsis oceanica)
ATGAAACAAGGACGTCAACGCTTGCCTGACCTGACAGCCACTATGCTTCT
TCCCCTTCTGCTCCTCTTCCTGTGCCCTGCGGCTATTGCGTTCAGCATGT
CCTCGCTTCCTTCAACCTCCTCCCTCTTCGTGTTTGGCCTGGGGTACGTG
GGAAGCCGCTTGGCGCAGAAACTGGCACCAGCGTGGGAGGTTGGCGGCAC
TGTGTCGTCTTTGTCTTCCTCGCTACCCTTTTCCCCCCAGGTACGTGAGT
GGGAATTCGATGCCAGGCCGTCAAATCCCACGCTCCTGGACGCTGCGGCG
CTGGCGGCGTTGCGACAAGCCACGCACGTCCTAGTGACCATCCCACCTGT
AGACGGCACGGACATGGTGGTGAAACTGTATGGCTCCCATCTATCAAACC
AATGCCCCCGTTTGCGCTGGGTTGGGTACTTAAGCTCCACGAGTGTCTAT
GGCGATCGAGGTGGTGACTTGGTATCAGAGGAGGATGAAGTGCGGCCCGT
TACGTCCAAGGGTGTGGCGCGTGTGGAGGCCGAGGCAGCGTGGATGGAGC
TGGTTCGGCAGGTACCAAGCCAGCTCTCACATTTACGTATTTTCCGGTTA
GCTGGTATCTATGGCCCGGGAAGGAACGCTTTGGAGACGATGAGGCAGGG
GTTGCAGGGGGCGCAAGCAGGGCCAGATATCTCAAGTCTTGATGGCGACC
GGTGGGTGAGCCGCATTCATGTCGAGGATATAGTTCGAGTGCTCCAGTGT
TCTATGGAAGACGACAGCCGGGATGGTGGCCAAGTGGAGATCTATAACGT
GGCTGACGACCAGCCTGCCTCTCGCCTGGAGGTTTTTTCCTTCGCGGCTG
CTTTGCTGGGCAATAAAGGAGCTGCCAATCTGATTGCTAACCCACCAGGA
TTCTCCCCGTCCGTAACCCCTCCCTCCTCCCGTCGTGCCCGGCCTCCAGA
GAGCAAGCGGGTGGCTAACAACAAAATAAAGGAGCTTCTACTAGGTGGCA
GCGCGGCATCCTCTTCCTCGACGTCGCCTTTACGATACCCCACATATGAG
GAGGGATTGAGGCACATATGCGAGGAAATGGACGTGTGGAGATACTAA
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Synonyms
Publications