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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:688462..692256 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02600.1 vs.
Match: EWM28135.1 (RNA binding protein [Nannochloropsis gaditana]) HSP 1 Score: 269.2 bits (687), Expect = 2.400e-68 Identity = 194/392 (49.49%), Postives = 233/392 (59.44%), Query Frame = 0
Query: 1 MDTASTTTMPGPTGSTGPAGEGGNNFNAFVTPTGGGLFAYEPPFPKGSPTPSSSSSPPPTNPGHEN--VLGATGNVSGGSRPDSSSPSLDAAEDSSSPAAVPPQGSLSSSQH-QKQEDDGISPSVPPSEEAQQMADKSS-KGKQNSHTTASTSETLDTTAAAAAAAAGEKQHQDQ----PGE--QNARLLDTLLTDNYTNNPAVGVSDAGPYPPSAAMGFDATLAATTLSMGNLELRSEDIKIANAQTFLMAQRQQQHLQHLQQGPQGQQGQQQQSLFHHFQQQQQQQQQQQQIAATAGGMGAGLSSALFSQSAGLLAAQQAQQQNPILSQQQAFAQSVYTKYGPQCNGGYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQ 383
M+T++T + G G+T G FN FVT +G GLFAYEP FPK SPT SS SS PP + E+ V A G V G SRP SS+P+LD+ E +SSP + + H QKQED+G S SV PSEEAQQ ADKS+ K TT+ E D A ++Q D PG NA +L+ LL D Y NP + PS+ DA+LA TL MG L +R E+ + NA+ F+MAQ+QQQH QQQ S F + Q + + GMG GL ++LF+Q+AGLLAAQQ Q NP L QQQ AQ+VY+KYG NGGYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQ
Sbjct: 1 METSNTASASGVAGATSAGDGGKGTFNTFVTQSGAGLFAYEPQFPKCSPTSSSPSSSPPPHTLQESTGVAAAAGCVLGDSRPHSSTPTLDSTEGASSPTRAGKEVVAQTLTHIQKQEDEGFSHSVSPSEEAQQPADKSTGKSSCGGCTTSIPGEVSDNVVVPVAEKLVQQQTLDSMAHPPGAVGPNAAILNNLLGDKYRQNPPGSLVSG----PSSTTDLDASLAVATLGMGGLGIRQEEAHMVNAEAFMMAQQQQQH-------------QQQHSFMQTFHRPQGPPR------VSVDGMGTGLPASLFNQNAGLLAAQQVQP-NPTLVQQQTLAQNVYSKYGIVTNGGYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQ 368
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02600.1 ID=NO05G02600.1|Name=NO05G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3253bp
GGGGGGGGGGGGGGGGGAAAGGGTCTTTATGGTTGACCCTACAGTACCCG
TTTTAAAAGAGTATTTTCACGCAGCGTAAGTGACAAAATCTCTTTAATTG
TAGAGATCTGTGTCCATTTTAATTTAGTTGTGTTGTCCCCTCCTCCCTGC
TGGCAGTATATCGATCGCCGAAGATGAGAAGGGGGGGGGGAGAGACGAAC
AGTTTTCGTCTTTCATTCTTGCATTTCTACGGATGAATCATTTCTTGTTA
GTTCCCCTCCATGCATGCATGGAACCACTTCACATTGCACTGTGATGACT
GGTGACTTTGCGACCTGGAGTTAGAGCTTTCAGTCTGGCTGTGATCGTAA
TCTTCCCATACGCCGTAGTCTTCTTTGCTTGTTCCACATCACCTTCTGTT
TCCTTATCTGTTTGAAATCCTCTCCACCCATTTCAGGGCAACCCAAGGGA
CATTGCAGCCGACTCGGGAGCATCGAACACAATTTCGCAGTCGTGCGACA
CTGAGCTTGGCGCCTACGACCATGGACACCGCCAGCACCACCACCATGCC
CGGTCCTACAGGGTCAACAGGTCCTGCTGGCGAGGGCGGCAACAATTTTA
ATGCCTTCGTCACGCCAACGGGGGGCGGACTCTTTGCCTACGAGCCTCCC
TTTCCCAAGGGTAGCCCCACCCCTTCTTCGTCCTCGTCGCCACCACCCAC
GAATCCAGGTCATGAGAATGTTCTTGGGGCCACAGGGAATGTATCTGGTG
GTTCGCGGCCTGATTCCTCATCCCCGTCCTTGGACGCGGCTGAGGATTCT
TCGTCGCCCGCCGCTGTCCCCCCCCAGGGTTCTCTCTCGTCGAGTCAGCA
CCAAAAGCAAGAGGATGATGGCATTTCACCCTCGGTGCCACCATCGGAAG
AGGCACAGCAGATGGCCGATAAGAGCAGTAAAGGAAAGCAGAACAGTCAC
ACCACTGCCAGCACCAGTGAAACATTGGATACCACGGCTGCGGCCGCTGC
TGCGGCCGCCGGTGAGAAGCAACATCAGGACCAGCCAGGAGAGCAGAACG
CCCGTCTTTTGGATACTTTACTGACCGACAACTACACCAATAACCCAGCG
GTGGGTGTCTCGGACGCGGGCCCTTACCCTCCTTCGGCTGCTATGGGATT
TGACGCGACTCTAGCAGCGACAACCTTGAGCATGGGCAACCTGGAGCTGC
GCTCTGAGGACATCAAAATAGCCAATGCACAGACATTTTTGATGGCTCAG
CGGCAGCAACAGCACCTACAGCACTTGCAACAGGGGCCGCAGGGGCAGCA
GGGACAACAGCAGCAATCCCTTTTCCATCATTTCCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAAATAGCCGCCACCGCAGGGGGAATGGGTGCG
GGTTTGTCGTCTGCGCTTTTTAGTCAAAGTGCTGGTCTCTTGGCCGCTCA
GCAGGCGCAGCAGCAGAATCCCATCCTATCCCAGCAGCAAGCATTTGCCC
AGAGCGTGTACACCAAGTATGGACCGCAATGTAACGGGGGGTACCCTAGC
CCGCTCAAAACACCCGGGGCGCCTATCAAGACCACAGACAGCGACAAGGG
CCCGGAGGGATGCAATTTGTTTGTCTTTCACATCCCTAACGACATGACGA
ACCTCGACTTATACCAGGCACGACAATTCCTTCCTTTTATTTCTCCCTCC
CCCTGCACTCCCTTCCCTGGTCGCTGTTTATGGGACTCTAATTTCTCATT
CGGTTTTGATTTTCGTGGCCTTTTATACTCGATCAATTCGAAGCACTCAC
CCGCGAACCCTCCCTTCTTTCTTCCCTCCATCCCCCTTCCCTTCAGATGT
TCTCTACCTTCGGTCAAGTCATCTCCGCCCGCATCATGGTCGACAAGGTC
ACAGGCCGCTCGCGTGGCTTCGGCTTCGTCAGCTACAACAACCCTGACTC
GGCACTCCAAGCCATCGAGGCAATGAATGGTTTCGTGGTCGGACATAAGC
GACTCAAGGTGGAGCAGAAAAAAGACAAGTCATCCCTGGGAATGTCCGGC
ATGGGTGGATCCATAGGGGGACACGGAGCCCCTTCCTCAGCCTTCTCTGC
CTCTGATACGTTGTCCCCTCACGGCAGTAACCCTTTAATGATTGGCTCAG
GTGGAGCGCCCGCCCCTCTCCACGCGCTGCAGCGGTGGCAAGCGCACTTG
GCTAGTCAGGCCGCGCTTCAGCAGCAGCAGGTTCAATATGGCGGCATGCC
TTTGCCGCAGCACCAACAGCACCAGCACCAGCAGGCACATGTGAACATCA
CGCAGCCGCCGCACCAGCATCAACAACAACAGCAACAGCAGCAGCAGCAG
CAGCAGCAACAACAACAACAACAACACCAATACCAGCAGCAGCAGCAGAA
GCAGCAGCAGGCCGGTGGTTTGATGGTTGGCGATGGGGGCCCTGAGTTTG
GAAGCATGGGTGGAGGAGAAGTGGGGCCAGGACAGGCCAGGAATTTCAAC
AGCGGGTCGATGGCAGCGGATCGGCCTTCTTCCCAGTACATTTCGCATGT
TGCGGGGCTGTATCAAGGCTAGATTGCTAGAAGCTGATATGATATGTGAG
GAATTTTCAGGAAGGTAGACAAGGACGAATTGAAGCGAAACGAGGAGTAA
GACTTGATTGAGTACAAAAAGGCGCCGAAAGTAGAATCGATAGAAGGATA
TCAGGCGTGGGCTTGCACTAGGGACACCGATAATTTGGGAAGCAGCCGAT
GAGACCACCGAGGTGGACAAGGGAACAGTACATTTAAATTCATGTGAAGA
ATGAGAGAAAGAGATATAGGCAGGCTACGTATTGGTGTTTTTTGTGCTCT
TTTATGAGTGAAAGAGGGATAATTCTTAGTATATTACTTGAGCATTGCGT
ATGTGTCCTTGCGCTATAAACGATAGGGAGGGCTCAGTGACAAAGGAGAA
ATTAGCAAGGTTGCAGGTGACTTTGAAGGAAGAAAGGGAGAAGCGAGAGG
GCCTGCCACCGATGGAGGGATATGTATGTTCGCGCGCGGAGTTGCTCTTT
TGCTGTCAGCACCCTTTGGTGGGTCGCCCGTCGTATTTGTATTTTAGGTC
TCTCCTCCTTATCTTCACTTTCTTTTTCTCCCTTTTATAAAACAACTTGT
GTATGAGAGTGTGTGTCTTTGTGTGTATGAGAATTCGTTTGTTTGAAAGT
AAGAGAAAGAGAAAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGA
GAG back to topprotein sequence of NO05G02600.1 >NO05G02600.1-protein ID=NO05G02600.1-protein|Name=NO05G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MDTASTTTMPGPTGSTGPAGEGGNNFNAFVTPTGGGLFAYEPPFPKGSPT
PSSSSSPPPTNPGHENVLGATGNVSGGSRPDSSSPSLDAAEDSSSPAAVP
PQGSLSSSQHQKQEDDGISPSVPPSEEAQQMADKSSKGKQNSHTTASTSE
TLDTTAAAAAAAAGEKQHQDQPGEQNARLLDTLLTDNYTNNPAVGVSDAG
PYPPSAAMGFDATLAATTLSMGNLELRSEDIKIANAQTFLMAQRQQQHLQ
HLQQGPQGQQGQQQQSLFHHFQQQQQQQQQQQQIAATAGGMGAGLSSALF
SQSAGLLAAQQAQQQNPILSQQQAFAQSVYTKYGPQCNGGYPSPLKTPGA
PIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQARQFLPFISPSPCTPFPG
RCLWDSNFSFGFDFRGLLYSINSKHSPANPPFFLPSIPLPFRCSLPSVKS
SPPASWSTRSQAARVASASSATTTLTRHSKPSRQ* back to topmRNA from alignment at chr5:688462..692256+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02600.1 ID=NO05G02600.1|Name=NO05G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3795bp|location=Sequence derived from alignment at chr5:688462..692256+ (Nannochloropsis oceanica)
GGGGGGGGGGGGGGGGGAAAGGGTCTTTATGGTTGACCCTACAGTACCCG
TTTTAAAAGAGTATTTTCACGCAGCGTAAGTGACAAAATCTCTTTAATTG
TAGAGATCTGTGTCCATTTTAATTTAGTTGTGTTGTCCCCTCCTCCCTGC
TGGCAGTATATCGATCGCCGAAGATGAGAAGGGGGGGGGGAGAGACGAAC
AGTTTTCGTCTTTCATTCTTGCATTTCTACGGATGAATCATTTCTTGTTA
GTTCCCCTCCATGCATGCATGGAACCACTTCACATTGCACTGTGATGACT
GGTGACTTTGCGACCTGGAGTTAGAGCTTTCAGTCTGGCTGTGATCGTAA
TCTTCCCATACGCCGTAGTCTTCTTTGCTTGTTCCACATCACCTTCTGTT
TCCTTATCTGTTTGAAATCCTCTCCACCCATTTCAGGGCAACCCAAGGGA
CATTGCAGCCGACTCGGGAGCATCGAACACAATTTCGCAGTCGGTAGGTA
CCACACGGCGCCTTCTCTGCAAGGGCCACATTACAAATCCGAAAACGCTC
TCACCGGGGCTTGCGGGACAGTCTTCTTTCTGAGGAGCTGAGAAAGGTGG
AAAAGGGCTTTCTTCTGCACTAATTCTTGTTTTATCCCAGCAGTGCGACA
CTGAGCTTGGCGCCTACGACCATGGACACCGCCAGCACCACCACCATGCC
CGGTCCTACAGGGTCAACAGGTCCTGCTGGCGAGGGCGGCAACAATTTTA
ATGCCTTCGTCACGCCAACGGGGGGCGGACTCTTTGCCTACGAGCCTCCC
TTTCCCAAGGGTAGCCCCACCCCTTCTTCGTCCTCGTCGCCACCACCCAC
GAATCCAGGTCATGAGAATGTTCTTGGGGCCACAGGGAATGTATCTGGTG
GTTCGCGGCCTGATTCCTCATCCCCGTCCTTGGACGCGGCTGAGGATTCT
TCGTCGCCCGCCGCTGTCCCCCCCCAGGGTTCTCTCTCGTCGAGTCAGCA
CCAAAAGCAAGAGGATGATGGCATTTCACCCTCGGTGCCACCATCGGAAG
AGGCACAGCAGATGGCCGATAAGAGCAGTAAAGGAAAGCAGAACAGTCAC
ACCACTGCCAGCACCAGTGAAACATTGGATACCACGGCTGCGGCCGCTGC
TGCGGCCGCCGGTGAGAAGCAACATCAGGACCAGCCAGGAGAGCAGAACG
CCCGTCTTTTGGATACTTTACTGACCGACAACTACACCAATAACCCAGCG
GTGGGTGTCTCGGACGCGGGCCCTTACCCTCCTTCGGCTGCTATGGGATT
TGACGCGACTCTAGCAGCGACAACCTTGAGCATGGGCAACCTGGAGCTGC
GCTCTGAGGACATCAAAATAGCCAATGCACAGACATTTTTGATGGCTCAG
CGGCAGCAACAGCACCTACAGCACTTGCAACAGGGGCCGCAGGGGCAGCA
GGGACAACAGCAGCAATCCCTTTTCCATCATTTCCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAAATAGCCGCCACCGCAGGGGGAATGGGTGCG
GGTTTGTCGTCTGCGCTTTTTAGTCAAAGTGCTGGTCTCTTGGCCGCTCA
GCAGGTATGTATGTGTATGCATGTATGTTTATGTATGTGTATGTATGTTT
GTGTGTTTACGTATGTGTATGTATGTGTTTGCAATTAATTCCGCCCGGGC
TTTTATATCCGGTCCGTCAGTATGTATCTGCCTATAGCCCACTTATTCCG
CCTACGCTTTCTTCTTCTCCCACGCTCATGCTATATGTCTTGGCTCTGTC
GTGTGCACGTCACATGCTGCCCTATTTTGGTCATGGTGGATCAAGTCACG
CTTCCCTCTGTTCTCGACCCTCAAACAGGCGCAGCAGCAGAATCCCATCC
TATCCCAGCAGCAAGCATTTGCCCAGAGCGTGTACACCAAGTATGGACCG
CAATGTAACGGGGGGTACCCTAGCCCGCTCAAAACACCCGGGGCGCCTAT
CAAGACCACAGACAGCGACAAGGGCCCGGAGGGATGCAATTTGTTTGTCT
TTCACATCCCTAACGACATGACGAACCTCGACTTATACCAGGCACGACAA
TTCCTTCCTTTTATTTCTCCCTCCCCCTGCACTCCCTTCCCTGGTCGCTG
TTTATGGGACTCTAATTTCTCATTCGGTTTTGATTTTCGTGGCCTTTTAT
ACTCGATCAATTCGAAGCACTCACCCGCGAACCCTCCCTTCTTTCTTCCC
TCCATCCCCCTTCCCTTCAGATGTTCTCTACCTTCGGTCAAGTCATCTCC
GCCCGCATCATGGTCGACAAGGTCACAGGCCGCTCGCGTGGCTTCGGCTT
CGTCAGCTACAACAACCCTGACTCGGCACTCCAAGCCATCGAGGCAATGA
ATGGTTTCGTGGTCGGACATAAGCGACTCAAGGTGGAGCAGAAAAAAGAC
AAGTCATCCCTGGGAATGTCCGGCATGGGTGGATCCATAGGGGGACACGG
AGCCCCTTCCTCAGCCTTCTCTGCCTCTGATACGTTGTCCCCTCACGGCA
GTAACCCTTTAATGATTGGCTCAGGTGGAGCGCCCGCCCCTCTCCACGCG
CTGCAGCGGTGGCAAGCGCACTTGGCTAGTCAGGCCGCGCTTCAGCAGCA
GCAGGTTCAATATGGCGGCATGCCTTTGCCGCAGCACCAACAGCACCAGC
ACCAGCAGGCACATGTGAACATCACGCAGCCGCCGCACCAGCATCAACAA
CAACAGCAACAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACA
CCAATACCAGCAGCAGCAGCAGAAGCAGCAGCAGGCCGGTGGTTTGATGG
TTGGCGATGGGGGCCCTGAGTTTGGAAGCATGGGTGGAGGAGAAGTGGGG
CCAGGACAGGCCAGGAATTTCAACAGCGGGTCGATGGCAGCGGATCGGCC
TTCTTCCCAGTACATTTCGCATGTTGCGGGGCTGTATCAAGGCTAGATTG
CTAGAAGCTGATATGATATGTGAGGAATTTTCAGGAAGGTAGACAAGGAC
GAATTGAAGCGAAACGAGGAGTAAGACTTGATTGAGTACAAAAAGGCGCC
GGTACGTGCGTCCTACTCCTGTCCATTCTTTGTGTAGCCGGCATCTATTC
ATTCTCACGCTGACACACCTACAAACTTTCCCTGTTCCCCCAATTGTTTT
TTATCACACGCCGATCTAGAAAGTAGAATCGATAGAAGGATATCAGGCGT
GGGCTTGCACTAGGGACACCGATAATTTGGGAAGCAGCCGATGAGACCAC
CGAGGTGGACAAGGGAACAGTACATTTAAATTCATGTGAAGAATGAGAGA
AAGAGATATAGGCAGGCTACGTATTGGTGTTTTTTGTGCTCTTTTATGAG
TGAAAGAGGGATAATTCTTAGTATATTACTTGAGCATTGCGTATGTGTCC
TTGCGCTATAAACGATAGGGAGGGCTCAGTGACAAAGGAGAAATTAGCAA
GGTTGCAGGTGACTTTGAAGGAAGAAAGGGAGAAGCGAGAGGGCCTGCCA
CCGATGGAGGGATATGTATGTTCGCGCGCGGAGTTGCTCTTTTGCTGTCA
GCACCCTTTGGTGGGTCGCCCGTCGTATTTGTATTTTAGGTCTCTCCTCC
TTATCTTCACTTTCTTTTTCTCCCTTTTATAAAACAACTTGTGTATGAGA
GTGTGTGTCTTTGTGTGTATGAGAATTCGTTTGTTTGAAAGTAAGAGAAA
GAGAAAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAG back to topCoding sequence (CDS) from alignment at chr5:688462..692256+ >NO05G02600.1 ID=NO05G02600.1|Name=NO05G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr5:688462..692256+ (Nannochloropsis oceanica)
ATGGACACCGCCAGCACCACCACCATGCCCGGTCCTACAGGGTCAACAGG
TCCTGCTGGCGAGGGCGGCAACAATTTTAATGCCTTCGTCACGCCAACGG
GGGGCGGACTCTTTGCCTACGAGCCTCCCTTTCCCAAGGGTAGCCCCACC
CCTTCTTCGTCCTCGTCGCCACCACCCACGAATCCAGGTCATGAGAATGT
TCTTGGGGCCACAGGGAATGTATCTGGTGGTTCGCGGCCTGATTCCTCAT
CCCCGTCCTTGGACGCGGCTGAGGATTCTTCGTCGCCCGCCGCTGTCCCC
CCCCAGGGTTCTCTCTCGTCGAGTCAGCACCAAAAGCAAGAGGATGATGG
CATTTCACCCTCGGTGCCACCATCGGAAGAGGCACAGCAGATGGCCGATA
AGAGCAGTAAAGGAAAGCAGAACAGTCACACCACTGCCAGCACCAGTGAA
ACATTGGATACCACGGCTGCGGCCGCTGCTGCGGCCGCCGGTGAGAAGCA
ACATCAGGACCAGCCAGGAGAGCAGAACGCCCGTCTTTTGGATACTTTAC
TGACCGACAACTACACCAATAACCCAGCGGTGGGTGTCTCGGACGCGGGC
CCTTACCCTCCTTCGGCTGCTATGGGATTTGACGCGACTCTAGCAGCGAC
AACCTTGAGCATGGGCAACCTGGAGCTGCGCTCTGAGGACATCAAAATAG
CCAATGCACAGACATTTTTGATGGCTCAGCGGCAGCAACAGCACCTACAG
CACTTGCAACAGGGGCCGCAGGGGCAGCAGGGACAACAGCAGCAATCCCT
TTTCCATCATTTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAA
TAGCCGCCACCGCAGGGGGAATGGGTGCGGGTTTGTCGTCTGCGCTTTTT
AGTCAAAGTGCTGGTCTCTTGGCCGCTCAGCAGGCGCAGCAGCAGAATCC
CATCCTATCCCAGCAGCAAGCATTTGCCCAGAGCGTGTACACCAAGTATG
GACCGCAATGTAACGGGGGGTACCCTAGCCCGCTCAAAACACCCGGGGCG
CCTATCAAGACCACAGACAGCGACAAGGGCCCGGAGGGATGCAATTTGTT
TGTCTTTCACATCCCTAACGACATGACGAACCTCGACTTATACCAGGCAC
GACAATTCCTTCCTTTTATTTCTCCCTCCCCCTGCACTCCCTTCCCTGGT
CGCTGTTTATGGGACTCTAATTTCTCATTCGGTTTTGATTTTCGTGGCCT
TTTATACTCGATCAATTCGAAGCACTCACCCGCGAACCCTCCCTTCTTTC
TTCCCTCCATCCCCCTTCCCTTCAGATGTTCTCTACCTTCGGTCAAGTCA
TCTCCGCCCGCATCATGGTCGACAAGGTCACAGGCCGCTCGCGTGGCTTC
GGCTTCGTCAGCTACAACAACCCTGACTCGGCACTCCAAGCCATCGAGGC
AATGA back to top
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