NO05G01580.1, NO05G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01580.1
Unique NameNO05G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1257
Alignment locationchr5:438862..440236 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:438862..440236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01580.1 vs.
Match: EWM28256.1 (sodium bile acid symporter family protein [Nannochloropsis gaditana])

HSP 1 Score: 494.2 bits (1271), Expect = 4.000e-136
Identity = 293/409 (71.64%), Postives = 320/409 (78.24%), Query Frame = 0 
Query:    8 FFLMMLPCMGPDLAQAFVSRHPARPTMGCYRAIVKSDAVGAFLTRGRGNSRHSRLSLSATATSALSTLSAPRPFAHGGGGDGDRKKKSTKATLIAAAKSLYFPFYVLLAGLLGATRPQLYDCLSEMFITRALSAVMVLMGMTLSVDDFARIGGSKRVVALGWCAQFSIMPTVALLMSRLFRLPPHLAAGVVLVGCCPGGTASNLVTLLANADVALSISMTAVSTLTAGIMTPLLTSLLLGSLVPVDTTALLRTTLQVVLLPVILGLLTNTYLLPSLSPSLTHALSRITPVLSGLLVAAICGKVVATNAGAVAQAGVPLLGAIVTLHVFGFFFGFLMARLLGFNRQVAKTVSIETGMQNSALAVVLARSSLPHPLSGLPGAVSAVCHSVLGSVLAWVWSREA--GKKGAK 415
            FFL+      P     F S +  RP +    A V   +V     R  G   ++  SL   A + L +             DG+  K+  KAT++AAAKSLYFP YVLLAGLLG TRPQLY  LSE FITRALSAVMVLMGMTLS+DDFARIG SKR V LGWCAQFSIMP +AL+MSR+FRLPPHLAAGV+LVGCCPGGTASNLVTLLA ADVALSISMTAVSTLTAG MTPLLTSLLLGSLVPVDT ALLRTTLQVVLLPV LGL+TN+YLLPSL PSLT  L+R TP++SGLLVAAICGKVVATNA AV Q+G  LLGA++ LH FGFFFGF MAR LGF+RQVAKTVSIETGMQNSALAVVLARSSLPHPLSGLPGAVSAVCHSVLGS+ AWVWSRE   G KGAK
Sbjct:   23 FFLL------PPSTYGFRSTYLPRPILRLVEAPVIRPSVAVPPQRSCGFPVYAYTSLQPAACTHLWSTR-----------DGEHSKRR-KATILAAAKSLYFPAYVLLAGLLGVTRPQLYAGLSEGFITRALSAVMVLMGMTLSMDDFARIGRSKRAVVLGWCAQFSIMPGMALIMSRVFRLPPHLAAGVILVGCCPGGTASNLVTLLAEADVALSISMTAVSTLTAGAMTPLLTSLLLGSLVPVDTAALLRTTLQVVLLPVALGLVTNSYLLPSLPPSLTRGLTRSTPLVSGLLVAAICGKVVATNAAAVLQSGGSLLGAVLALHSFGFFFGFWMARALGFSRQVAKTVSIETGMQNSALAVVLARSSLPHPLSGLPGAVSAVCHSVLGSLAAWVWSREGDRGGKGAK 413
The following BLAST results are available for this feature:
BLAST of NO05G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28256.14.000e-13671.64sodium bile acid symporter family protein [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01580NO05G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01580.1NO05G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01580.1.cds1NO05G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01580.1.cds2NO05G01580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01580.1 ID=NO05G01580.1|Name=NO05G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp
ATGGTGAGGAGGTCGACTGCTTTTTTCCTTATGATGCTTCCTTGTATGGG
GCCAGACCTGGCCCAGGCCTTCGTATCCAGACATCCTGCGCGGCCAACGA
TGGGCTGCTATCGAGCTATAGTGAAAAGTGATGCAGTCGGAGCTTTTCTA
ACGAGGGGCAGAGGTAATAGCAGGCACAGCAGGCTATCGCTTTCCGCCAC
TGCTACCTCTGCCCTCTCCACCCTGTCTGCACCGCGCCCATTCGCCCATG
GCGGCGGCGGAGACGGAGACCGTAAGAAAAAGAGTACTAAAGCGACCTTG
ATTGCTGCCGCCAAAAGTTTATACTTCCCTTTTTACGTCCTGCTGGCCGG
CTTGCTAGGTGCGACTCGGCCCCAACTCTATGACTGCCTGAGCGAGATGT
TTATCACACGGGCTTTGTCCGCGGTGATGGTTCTCATGGGGATGACCCTT
TCCGTGGACGATTTCGCTCGGATAGGTGGTAGTAAACGGGTGGTAGCCCT
AGGATGGTGCGCACAATTTTCGATAATGCCAACTGTAGCTTTGTTGATGT
CGCGGCTCTTTCGTCTTCCCCCACATTTGGCAGCTGGGGTCGTCCTCGTT
GGTTGCTGTCCAGGCGGCACCGCCTCTAACCTTGTCACCCTTCTCGCCAA
CGCAGATGTCGCCCTCAGCATCAGCATGACAGCCGTCTCCACCCTTACTG
CAGGGATAATGACTCCCCTCCTCACCTCCCTTCTCTTGGGGTCCCTTGTC
CCCGTCGACACCACCGCCCTTCTTCGCACCACCTTGCAAGTCGTCCTCCT
CCCTGTCATCCTCGGCCTGCTTACCAACACCTACCTCCTGCCCTCTCTCT
CTCCCTCCCTCACCCATGCCCTCTCTCGGATCACCCCCGTTCTATCCGGT
TTGCTTGTTGCTGCAATCTGTGGTAAAGTAGTCGCGACAAATGCAGGGGC
AGTGGCACAAGCGGGCGTACCCTTGTTAGGAGCGATCGTGACGTTACATG
TGTTTGGTTTCTTTTTTGGGTTTTTAATGGCGAGGCTTTTGGGCTTTAAT
CGCCAAGTTGCCAAGACTGTGTCCATTGAAACGGGAATGCAAAATTCAGC
GCTCGCTGTGGTGCTGGCGCGGTCGAGTCTGCCGCACCCCCTGTCAGGCT
TGCCAGGTGCAGTCTCAGCAGTATGTCATTCGGTGTTGGGGAGTGTGCTG
GCGTGGGTCTGGAGTCGGGAGGCAGGCAAGAAGGGAGCGAAAGAAGAGTG
TGAGTGA
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protein sequence of NO05G01580.1

>NO05G01580.1-protein ID=NO05G01580.1-protein|Name=NO05G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MVRRSTAFFLMMLPCMGPDLAQAFVSRHPARPTMGCYRAIVKSDAVGAFL
TRGRGNSRHSRLSLSATATSALSTLSAPRPFAHGGGGDGDRKKKSTKATL
IAAAKSLYFPFYVLLAGLLGATRPQLYDCLSEMFITRALSAVMVLMGMTL
SVDDFARIGGSKRVVALGWCAQFSIMPTVALLMSRLFRLPPHLAAGVVLV
GCCPGGTASNLVTLLANADVALSISMTAVSTLTAGIMTPLLTSLLLGSLV
PVDTTALLRTTLQVVLLPVILGLLTNTYLLPSLSPSLTHALSRITPVLSG
LLVAAICGKVVATNAGAVAQAGVPLLGAIVTLHVFGFFFGFLMARLLGFN
RQVAKTVSIETGMQNSALAVVLARSSLPHPLSGLPGAVSAVCHSVLGSVL
AWVWSREAGKKGAKEECE*
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mRNA from alignment at chr5:438862..440236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01580.1 ID=NO05G01580.1|Name=NO05G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1375bp|location=Sequence derived from alignment at chr5:438862..440236- (Nannochloropsis oceanica)
ATGGTGAGGAGGTCGACTGCTTTTTTCCTTATGATGCTTCCTTGTATGGG
GCCAGACCTGGCCCAGGCCTTCGTATCCAGACATCCTGCGCGGCCAACGA
TGGGCTGCTATCGAGCTATAGTGAAAAGTGATGCAGTCGGAGCTTTTCTA
ACGAGGGGCAGAGGTAATAGCAGGCACAGCAGGCTATCGCTTTCCGCCAC
TGCTACCTCTGCCCTCTCCACCCTGTCTGCACCGCGCCCATTCGCCCATG
GCGGCGGCGGAGACGGAGACCGTAAGAAAAAGAGTACTAAAGCGACCTTG
ATTGCTGCCGCCAAAAGTTTATACTTCCCTTTTTACGTCCTGCTGGCCGG
CTTGCTAGGTGCGACTCGGCCCCAACTCTATGACTGCCTGAGCGAGATGT
TTATCACACGGGCTTTGTCCGCGGTGATGGTTCTCATGGGGATGACCCTT
TCCGTGGACGATTTCGCTCGGATAGGTGGTAGTAAACGGGTGGTAGCCCT
AGGATGGTGCGCACAATTTTCGATAATGCCAACTGTAGCTTTGTTGATGT
CGCGGCTCTTTCGTCTTCCCCCACATTTGGCAGCTGGGGTCGTCCTCGTT
GGTTAGTATGTGTCTTACCGGGAGCCATGCGGAGAGCGCTTCGTTTACTA
TTCGTACTTGTTTTTTCTTTACCCTTATCCTTCCTCCTTCCCTTCCTCAC
TTCACAAACGACACTACAGGTTGCTGTCCAGGCGGCACCGCCTCTAACCT
TGTCACCCTTCTCGCCAACGCAGATGTCGCCCTCAGCATCAGCATGACAG
CCGTCTCCACCCTTACTGCAGGGATAATGACTCCCCTCCTCACCTCCCTT
CTCTTGGGGTCCCTTGTCCCCGTCGACACCACCGCCCTTCTTCGCACCAC
CTTGCAAGTCGTCCTCCTCCCTGTCATCCTCGGCCTGCTTACCAACACCT
ACCTCCTGCCCTCTCTCTCTCCCTCCCTCACCCATGCCCTCTCTCGGATC
ACCCCCGTTCTATCCGGTTTGCTTGTTGCTGCAATCTGTGGTAAAGTAGT
CGCGACAAATGCAGGGGCAGTGGCACAAGCGGGCGTACCCTTGTTAGGAG
CGATCGTGACGTTACATGTGTTTGGTTTCTTTTTTGGGTTTTTAATGGCG
AGGCTTTTGGGCTTTAATCGCCAAGTTGCCAAGACTGTGTCCATTGAAAC
GGGAATGCAAAATTCAGCGCTCGCTGTGGTGCTGGCGCGGTCGAGTCTGC
CGCACCCCCTGTCAGGCTTGCCAGGTGCAGTCTCAGCAGTATGTCATTCG
GTGTTGGGGAGTGTGCTGGCGTGGGTCTGGAGTCGGGAGGCAGGCAAGAA
GGGAGCGAAAGAAGAGTGTGAGTGA
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Coding sequence (CDS) from alignment at chr5:438862..440236-

>NO05G01580.1 ID=NO05G01580.1|Name=NO05G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr5:438862..440236- (Nannochloropsis oceanica)
ATGGTGAGGAGGTCGACTGCTTTTTTCCTTATGATGCTTCCTTGTATGGG
GCCAGACCTGGCCCAGGCCTTCGTATCCAGACATCCTGCGCGGCCAACGA
TGGGCTGCTATCGAGCTATAGTGAAAAGTGATGCAGTCGGAGCTTTTCTA
ACGAGGGGCAGAGGTAATAGCAGGCACAGCAGGCTATCGCTTTCCGCCAC
TGCTACCTCTGCCCTCTCCACCCTGTCTGCACCGCGCCCATTCGCCCATG
GCGGCGGCGGAGACGGAGACCGTAAGAAAAAGAGTACTAAAGCGACCTTG
ATTGCTGCCGCCAAAAGTTTATACTTCCCTTTTTACGTCCTGCTGGCCGG
CTTGCTAGGTGCGACTCGGCCCCAACTCTATGACTGCCTGAGCGAGATGT
TTATCACACGGGCTTTGTCCGCGGTGATGGTTCTCATGGGGATGACCCTT
TCCGTGGACGATTTCGCTCGGATAGGTGGTAGTAAACGGGTGGTAGCCCT
AGGATGGTGCGCACAATTTTCGATAATGCCAACTGTAGCTTTGTTGATGT
CGCGGCTCTTTCGTCTTCCCCCACATTTGGCAGCTGGGGTCGTCCTCGTT
GGTTGCTGTCCAGGCGGCACCGCCTCTAACCTTGTCACCCTTCTCGCCAA
CGCAGATGTCGCCCTCAGCATCAGCATGACAGCCGTCTCCACCCTTACTG
CAGGGATAATGACTCCCCTCCTCACCTCCCTTCTCTTGGGGTCCCTTGTC
CCCGTCGACACCACCGCCCTTCTTCGCACCACCTTGCAAGTCGTCCTCCT
CCCTGTCATCCTCGGCCTGCTTACCAACACCTACCTCCTGCCCTCTCTCT
CTCCCTCCCTCACCCATGCCCTCTCTCGGATCACCCCCGTTCTATCCGGT
TTGCTTGTTGCTGCAATCTGTGGTAAAGTAGTCGCGACAAATGCAGGGGC
AGTGGCACAAGCGGGCGTACCCTTGTTAGGAGCGATCGTGACGTTACATG
TGTTTGGTTTCTTTTTTGGGTTTTTAATGGCGAGGCTTTTGGGCTTTAAT
CGCCAAGTTGCCAAGACTGTGTCCATTGAAACGGGAATGCAAAATTCAGC
GCTCGCTGTGGTGCTGGCGCGGTCGAGTCTGCCGCACCCCCTGTCAGGCT
TGCCAGGTGCAGTCTCAGCAGTATGTCATTCGGTGTTGGGGAGTGTGCTG
GCGTGGGTCTGGAGTCGGGAGGCAGGCAAGAAGGGAGCGAAAGAAGAGTG
TGAGTGA
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Synonyms
Publications