NO05G01340.1, NO05G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01340.1
Unique NameNO05G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr5:386114..386989 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:386114..386989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01340.1 vs.
Match: EWM28262.1 (Brix domain protein [Nannochloropsis gaditana])

HSP 1 Score: 525.0 bits (1351), Expect = 1.500e-145
Identity = 253/291 (86.94%), Postives = 275/291 (94.50%), Query Frame = 0 
Query:    1 MSTLRRQTRLRKEYLYRKSLEGKEKSAYERKRLIRTALQEGKPIPTELRGEEASLRHEVGLEDEATSTPRSHVDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPSAQAVNRGNTKVPELVEACRTHDFTDIVMVQETRGQPDGLLVCHLPLGPTAYFTLSNVVMRHDIEDRATVSEAYPHLIFEGFTSSLGQRVADILKYTFPAPKAETKRVVTFANEDDQIVFRHHTFEKAPGVKGEVTLKEVGPRFDLTLFQVKLGTLEQADAETEYVFRPYMNTAKKRRML 292
            MST+RRQTRLRKEYLYRKSLEGKEK+AYERK+ IR ALQEGKPIPTELRGEE + RHE+ LED+ T+ P +H+DDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFP+AQAVNRGNTKVPELVEACRTHDFTDIV+VQETRGQPDGLLVCHLPLGPTAYFT+SNVVMRHDIEDRA VSEAYPHLI EGF S+LG+RVADILK+TFPAP+  ++RVVTFANEDD IVFRHHTFEKAPG KGEVTLKE+GPRFDLT+FQVKLGTLEQ DAETE+VFRPYMNTAKKRR+L
Sbjct:   43 MSTIRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAVSEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
The following BLAST results are available for this feature:
BLAST of NO05G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28262.11.500e-14586.94Brix domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01340NO05G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01340.1NO05G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01340.1.cds1NO05G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01340.1 ID=NO05G01340.1|Name=NO05G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
ATGAGCACCCTCCGAAGACAAACGCGGCTTCGGAAGGAGTACTTATATCG
GAAGTCTTTGGAAGGCAAGGAGAAGTCGGCGTATGAACGCAAGCGCCTGA
TCCGTACGGCCCTACAAGAAGGCAAGCCCATTCCCACGGAGCTGCGGGGC
GAGGAGGCCAGCTTGCGGCATGAGGTCGGGTTGGAGGACGAGGCAACCTC
CACACCTCGGTCGCACGTGGATGATGAGTATGGTTTGGCTGGCACGCGGG
ACCCAAAAGTTTGTGTGACCACGTCGCGTGATCCGTCCTCGCGGCTGAAG
CAGTTTATGAAGGAAGTCAAGCTCATCTTTCCCAGTGCCCAGGCAGTCAA
CAGAGGCAATACCAAGGTCCCCGAGCTGGTGGAAGCTTGTCGCACGCATG
ACTTTACGGATATTGTTATGGTTCAAGAAACGAGGGGGCAGCCCGATGGG
TTGCTGGTGTGTCACTTGCCTTTGGGTCCCACTGCTTATTTCACCTTGTC
GAATGTGGTGATGCGGCATGATATTGAAGACCGAGCTACGGTTTCGGAGG
CCTACCCTCACCTAATCTTTGAGGGATTTACGTCTAGCCTAGGGCAGAGG
GTGGCAGACATTTTGAAGTATACGTTTCCGGCGCCAAAGGCCGAGACGAA
GCGGGTGGTGACGTTTGCGAATGAGGATGACCAGATCGTGTTTCGGCATC
ACACTTTTGAGAAGGCTCCGGGAGTGAAGGGGGAGGTGACTCTCAAGGAG
GTGGGGCCTCGGTTTGATCTGACCTTGTTTCAAGTCAAATTGGGAACGTT
GGAGCAGGCGGATGCGGAAACAGAGTATGTTTTCAGGCCGTACATGAACA
CAGCCAAGAAGAGGAGGATGCTTTAA
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protein sequence of NO05G01340.1

>NO05G01340.1-protein ID=NO05G01340.1-protein|Name=NO05G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MSTLRRQTRLRKEYLYRKSLEGKEKSAYERKRLIRTALQEGKPIPTELRG
EEASLRHEVGLEDEATSTPRSHVDDEYGLAGTRDPKVCVTTSRDPSSRLK
QFMKEVKLIFPSAQAVNRGNTKVPELVEACRTHDFTDIVMVQETRGQPDG
LLVCHLPLGPTAYFTLSNVVMRHDIEDRATVSEAYPHLIFEGFTSSLGQR
VADILKYTFPAPKAETKRVVTFANEDDQIVFRHHTFEKAPGVKGEVTLKE
VGPRFDLTLFQVKLGTLEQADAETEYVFRPYMNTAKKRRML*
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mRNA from alignment at chr5:386114..386989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01340.1 ID=NO05G01340.1|Name=NO05G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp|location=Sequence derived from alignment at chr5:386114..386989- (Nannochloropsis oceanica)
ATGAGCACCCTCCGAAGACAAACGCGGCTTCGGAAGGAGTACTTATATCG
GAAGTCTTTGGAAGGCAAGGAGAAGTCGGCGTATGAACGCAAGCGCCTGA
TCCGTACGGCCCTACAAGAAGGCAAGCCCATTCCCACGGAGCTGCGGGGC
GAGGAGGCCAGCTTGCGGCATGAGGTCGGGTTGGAGGACGAGGCAACCTC
CACACCTCGGTCGCACGTGGATGATGAGTATGGTTTGGCTGGCACGCGGG
ACCCAAAAGTTTGTGTGACCACGTCGCGTGATCCGTCCTCGCGGCTGAAG
CAGTTTATGAAGGAAGTCAAGCTCATCTTTCCCAGTGCCCAGGCAGTCAA
CAGAGGCAATACCAAGGTCCCCGAGCTGGTGGAAGCTTGTCGCACGCATG
ACTTTACGGATATTGTTATGGTTCAAGAAACGAGGGGGCAGCCCGATGGG
TTGCTGGTGTGTCACTTGCCTTTGGGTCCCACTGCTTATTTCACCTTGTC
GAATGTGGTGATGCGGCATGATATTGAAGACCGAGCTACGGTTTCGGAGG
CCTACCCTCACCTAATCTTTGAGGGATTTACGTCTAGCCTAGGGCAGAGG
GTGGCAGACATTTTGAAGTATACGTTTCCGGCGCCAAAGGCCGAGACGAA
GCGGGTGGTGACGTTTGCGAATGAGGATGACCAGATCGTGTTTCGGCATC
ACACTTTTGAGAAGGCTCCGGGAGTGAAGGGGGAGGTGACTCTCAAGGAG
GTGGGGCCTCGGTTTGATCTGACCTTGTTTCAAGTCAAATTGGGAACGTT
GGAGCAGGCGGATGCGGAAACAGAGTATGTTTTCAGGCCGTACATGAACA
CAGCCAAGAAGAGGAGGATGCTTTAA
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Coding sequence (CDS) from alignment at chr5:386114..386989-

>NO05G01340.1 ID=NO05G01340.1|Name=NO05G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr5:386114..386989- (Nannochloropsis oceanica)
ATGAGCACCCTCCGAAGACAAACGCGGCTTCGGAAGGAGTACTTATATCG
GAAGTCTTTGGAAGGCAAGGAGAAGTCGGCGTATGAACGCAAGCGCCTGA
TCCGTACGGCCCTACAAGAAGGCAAGCCCATTCCCACGGAGCTGCGGGGC
GAGGAGGCCAGCTTGCGGCATGAGGTCGGGTTGGAGGACGAGGCAACCTC
CACACCTCGGTCGCACGTGGATGATGAGTATGGTTTGGCTGGCACGCGGG
ACCCAAAAGTTTGTGTGACCACGTCGCGTGATCCGTCCTCGCGGCTGAAG
CAGTTTATGAAGGAAGTCAAGCTCATCTTTCCCAGTGCCCAGGCAGTCAA
CAGAGGCAATACCAAGGTCCCCGAGCTGGTGGAAGCTTGTCGCACGCATG
ACTTTACGGATATTGTTATGGTTCAAGAAACGAGGGGGCAGCCCGATGGG
TTGCTGGTGTGTCACTTGCCTTTGGGTCCCACTGCTTATTTCACCTTGTC
GAATGTGGTGATGCGGCATGATATTGAAGACCGAGCTACGGTTTCGGAGG
CCTACCCTCACCTAATCTTTGAGGGATTTACGTCTAGCCTAGGGCAGAGG
GTGGCAGACATTTTGAAGTATACGTTTCCGGCGCCAAAGGCCGAGACGAA
GCGGGTGGTGACGTTTGCGAATGAGGATGACCAGATCGTGTTTCGGCATC
ACACTTTTGAGAAGGCTCCGGGAGTGAAGGGGGAGGTGACTCTCAAGGAG
GTGGGGCCTCGGTTTGATCTGACCTTGTTTCAAGTCAAATTGGGAACGTT
GGAGCAGGCGGATGCGGAAACAGAGTATGTTTTCAGGCCGTACATGAACA
CAGCCAAGAAGAGGAGGATGCTTTAA
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Synonyms
Publications