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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:362267..365085 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01270.1 vs.
Match: EWM28200.1 (arginine serine-rich splicing factor [Nannochloropsis gaditana]) HSP 1 Score: 620.5 bits (1599), Expect = 6.300e-174 Identity = 355/581 (61.10%), Postives = 410/581 (70.57%), Query Frame = 0
Query: 6 GSSSTSIANPASLATATASAPSGLQALLVSSPTNQPQPRSGPPVAEDQIQNTLKCPICIDWFTDPILLDCSHSLCLDCARRLALHDGGTNTAEVTCPLCKEVTAVTGGDKAREMEDALIADALKRFDVVPPRKSRARIEDLRTCYEAFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTEEALGEKRPESPSASRNAADATS--SMSAGEDGEEG------REGMDDPMKQLRFKKNILLANLVAHFREQQEQR----------TGSPVAGITTSTRGLQEEEEAYDD----------DVFMEEGGEGSEDGEVTEDGKGHGSAPVKEGGGEDGGSGNKRGSRWGGMSGKSEAAAAGSRHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQFQSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQADRAMARWHDNVWRGRHFFIDYALRENISKEDPYPRGDRDRLERERERSAGGGGEEEEEGEVVNVRGRGKRKEKGRGKGSESGRVTE 559
G+S+T+ A+PASL S AL + RS PPVAEDQI+NTLKCPICIDWF +PILLDCSHSLCLDCARRLALHD G+NTAEVTCPLCKEVTA++GGDKAREME+ALIA+ALKRFDV+PPRKSRARIEDLR CYE FIKNGLVAIGPNDAKPTALHMWRAVVARMESQT+E LGE + ES +S + T+ + +GEE +G +DPMK+LRFKKNILL NLV+HFR+QQEQR P AG T + ++ +EE Y D +E+ G +EDGEV ED AP E GG G + SRW GK A +GSRHV+VGNLPNGVKEEHLRE FK YGG+ESVR+LRRT Q MTGFLHFK+ AEAIRAKKELD KPFV G LP+ MKIQ+QSRG N+P RSIRVHNLP DL ELF FGRV + V+N NSNI FL+LE VEQA++AMARWHD WRGRH F+DYALRE ISKEDP+ RG+RDR + R+ AGGG E E+E E R RG +E+GR + E R E
Sbjct: 19 GTSATT-AHPASLPIPPLPLSSPAAAL-----SQHAGSRSSPPVAEDQIENTLKCPICIDWFVEPILLDCSHSLCLDCARRLALHDSGSNTAEVTCPLCKEVTAISGGDKAREMEEALIAEALKRFDVIPPRKSRARIEDLRACYEGFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTQETLGEAKNESSPSSSTVIETTAIHPSTGSRNGEEAGSSYGTEDGREDPMKKLRFKKNILLNNLVSHFRQQQEQRGPGLSAGLSPPAGPHAGHTKDGQEVEGKEEGYGSPEGEKGEAAADPSVEQEGGVTEDGEVMEDAAVSSLAPKVEQGGPGRSPGERGPSRWDAGHGKVAAGESGSRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAIRAKKELDRKPFVAGHLPRQVMKIQYQSRGNNKPCRSIRVHNLPVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLFLDYALRETISKEDPHLRGERDR--QGRQGMAGGGNEREKERE----RERGWERERGRERDREWDRERE 587
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01270.1 ID=NO05G01270.1|Name=NO05G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp
ATGGCTTCATCCGTGGGCAGCAGCAGCACCAGCATCGCGAACCCCGCCTC
CCTCGCGACAGCTACTGCCTCGGCTCCTTCCGGCCTCCAGGCTCTCCTCG
TTTCCTCGCCCACCAACCAACCACAGCCCCGGAGCGGCCCTCCCGTAGCG
GAGGACCAGATTCAAAACACACTCAAGTGTCCTATATGCATCGATTGGTT
TACCGACCCCATCCTCCTTGACTGCAGCCATTCCCTCTGTCTGGACTGTG
CGCGCCGCCTGGCCCTCCATGATGGCGGGACAAACACCGCCGAGGTGACG
TGTCCGTTGTGCAAGGAAGTGACGGCGGTGACGGGTGGGGATAAGGCGCG
AGAAATGGAGGATGCACTGATCGCTGACGCGCTAAAGCGGTTCGACGTTG
TCCCTCCCAGGAAGAGCCGTGCCCGCATTGAAGACCTGCGAACCTGCTAC
GAGGCCTTTATCAAGAACGGCCTCGTAGCCATCGGTCCCAACGATGCTAA
GCCCACGGCCTTACACATGTGGCGCGCCGTCGTTGCGCGCATGGAAAGCC
AAACCGAAGAGGCCCTTGGCGAGAAGAGACCCGAGTCTCCCTCCGCATCC
AGAAACGCTGCCGACGCCACCAGCAGTATGTCTGCGGGGGAGGATGGGGA
GGAAGGGAGGGAGGGCATGGACGACCCGATGAAGCAGCTCCGATTTAAGA
AGAACATTTTGCTTGCGAACCTTGTCGCGCATTTTAGAGAGCAGCAAGAG
CAGCGTACCGGCAGTCCAGTTGCAGGTATTACCACATCTACGAGGGGCCT
CCAGGAAGAGGAAGAGGCCTACGACGACGACGTGTTCATGGAAGAGGGAG
GGGAGGGATCGGAGGACGGGGAGGTGACAGAAGATGGGAAGGGACATGGT
TCTGCACCCGTCAAGGAAGGAGGCGGAGAGGATGGAGGGTCAGGCAACAA
GCGGGGGTCTCGATGGGGTGGTATGAGTGGGAAAAGCGAGGCGGCTGCGG
CGGGCTCACGGCACGTTTGGGTGGGTAATTTGCCCAACGGCGTAAAGGAG
GAGCATTTGCGGGAGATTTTCAAGGGCTACGGTGGGGTGGAGTCTGTGAG
GATGCTGCGACGGACCCCGCAGTCCATGACGGGCTTCTTGCATTTCAAGG
AGACGGCAGAGGCAATTCGCGCCAAAAAGGAATTGGACGGGAAACCCTTT
GTCGGAGGAAAGCTCCCACAGAACGCGATGAAGATCCAGTTCCAATCTAG
AGGGATAAATCGCCCGTTGCGGAGCATTCGCGTCCACAATTTGCCACCTA
AGACGACCTCAGCGGACTTGGTGGAGCTTTTTAGTGAGTTCGGGCGGGTG
GAGGTGGCGGTGGTCAATGTGAATTCCAATATTGGCTTTTTGGCGTTGGA
GAACGTTGAGCAAGCCGACCGAGCCATGGCCCGATGGCACGACAATGTGT
GGCGGGGTAGGCACTTTTTTATTGATTATGCCTTGCGGGAAAATATCTCC
AAGGAGGATCCTTATCCGCGGGGGGACCGAGATCGACTCGAGAGGGAGAG
AGAGCGAAGTGCAGGGGGGGGGGGAGAGGAGGAGGAGGAGGGGGAGGTCG
TGAACGTGAGAGGGAGAGGGAAAAGGAAAGAGAAAGGGAGAGGGAAAGGG
AGCGAGAGCGGTCGCGTGACCGAGAGCTCGGCTTGCCCCCCTCCGATCAT
CGGCGTGGCCCACCCTTACCACCATTACACCATCACCAACCTCCGCACAC
TTCTTTCCGTGATCATCCCATCCCTTCCCACCCTCGCGACCGTGCCGCAT
CCATGCCTCTTCCTCCCCCTTTTCGGGATGGCCCATTTGGACCAGGGGGC
GACCGAGGGCGAGATCTTCACCAAGACCGAGAGCGCATGCGATATCATTC
TCCTCCTCCCTCCGATTACCGTCGCTTTCCTCCTCCAGGCCACCCTGACC
ACCATCTCCACCATTCCATTCCCCCTCCGCATCACTACGATCGCTCTTCT
CCCCATGGTGGCTATCGAGATGACCCGCGGCTTTATTCCCCGGACCGACG
TGGGGGGGAGCATCTGCCGCCTATCCCTCCGCCAGGTTACCGCGACGACC
GCCGCGGCCCTCCATCAGCTCTTCATCCCTCCTCCTTGGGACCCCCTCCA
ATAG back to topprotein sequence of NO05G01270.1 >NO05G01270.1-protein ID=NO05G01270.1-protein|Name=NO05G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=718bp
MASSVGSSSTSIANPASLATATASAPSGLQALLVSSPTNQPQPRSGPPVA
EDQIQNTLKCPICIDWFTDPILLDCSHSLCLDCARRLALHDGGTNTAEVT
CPLCKEVTAVTGGDKAREMEDALIADALKRFDVVPPRKSRARIEDLRTCY
EAFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTEEALGEKRPESPSAS
RNAADATSSMSAGEDGEEGREGMDDPMKQLRFKKNILLANLVAHFREQQE
QRTGSPVAGITTSTRGLQEEEEAYDDDVFMEEGGEGSEDGEVTEDGKGHG
SAPVKEGGGEDGGSGNKRGSRWGGMSGKSEAAAAGSRHVWVGNLPNGVKE
EHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPF
VGGKLPQNAMKIQFQSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRV
EVAVVNVNSNIGFLALENVEQADRAMARWHDNVWRGRHFFIDYALRENIS
KEDPYPRGDRDRLERERERSAGGGGEEEEEGEVVNVRGRGKRKEKGRGKG
SESGRVTESSACPPPIIGVAHPYHHYTITNLRTLLSVIIPSLPTLATVPH
PCLFLPLFGMAHLDQGATEGEIFTKTESACDIILLLPPITVAFLLQATLT
TISTIPFPLRITTIALLPMVAIEMTRGFIPRTDVGGSICRLSLRQVTATT
AAALHQLFIPPPWDPLQ* back to topmRNA from alignment at chr5:362267..365085+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01270.1 ID=NO05G01270.1|Name=NO05G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2819bp|location=Sequence derived from alignment at chr5:362267..365085+ (Nannochloropsis oceanica)
ATGGCTTCATCCGTGGGCAGCAGCAGCACCAGCATCGCGAACCCCGCCTC
CCTCGCGACAGCTACTGCCTCGGCTCCTTCCGGCCTCCAGGCTCTCCTCG
TTTCCTCGCCCACCAACCAACCACAGCCCCGGAGCGGCCCTCCCGTAGCG
GAGGACCAGATTCAAAACACACTCAAGTGTCCTATATGCATCGATTGGTT
TACCGACCCCATCCTCCTTGACTGCAGCCATTCCCTCTGTCTGGACTGTG
CGCGCCGCCTGGCCCTCCATGATGGCGGGACAAACACCGCCGAGGTGACG
TGTCCGTTGTGCAAGGAAGTGACGGCGGTGACGGGTGGGGATAAGGCGCG
AGAAATGGAGGATGCACTGATCGCTGACGCGCTAAAGCGGTTCGACGTTG
TCCCTCCCAGGAAGAGCCGTGCCCGCATTGAAGACCTGCGAACCTGCTAC
GAGGCCTTTATCAAGAACGGCCTCGTAGCCATCGGTCCCAACGATGCTAA
GTGAGTTTGACATTCTTTAAATGTGCTTGTTTGTCGGCACGGCCTTACAA
GCCCGTCGGGTGGAATGCTCTTGAGTGGGCTGTTCTCCCTTCCCACCTCG
CTTGTCTCTCTCCAAGAGGTCTTGGTCAGCTTGGCTAGCAGTGTTTATGT
ACTGTCCCCTAATGCCTTGTCCGTCCCTCCTTTCTGTCTTCGTCTCAGCC
TTCGCCCTCCCTCTTACACATTTAATCACCCTCCCCCATTTTCTCTCTTC
CTCACTCCCCACCCCTCCGCCACCTACGTACCCTCAGGCCCACGGCCTTA
CACATGTGGCGCGCCGTCGTTGCGCGCATGGAAAGCCAAACCGAAGAGGC
CCTTGGCGAGAAGAGACCCGAGTCTCCCTCCGCATCCAGAAACGCTGCCG
ACGCCACCAGCAGTATGTCTGCGGGGGAGGATGGGGAGGAAGGGAGGGAG
GGCATGGACGACCCGATGAAGCAGCTCCGATTTAAGAAGAACATTTTGCT
TGCGAACCTTGTCGCGCATTTTAGAGAGCAGCAAGAGCAGCGTACCGGCA
GTCCAGTTGCAGGTATTACCACATCTACGAGGGGCCTCCAGGAAGAGGAA
GAGGCCTACGACGACGACGTGTTCATGGAAGAGGGAGGGGAGGGATCGGA
GGACGGGGAGGTGACAGAAGATGGGAAGGGACATGGTTCTGCACCCGTCA
AGGAAGGAGGCGGAGAGGATGGAGGGTCAGGCAACAAGCGGGGGTCTCGA
TGGGGTGGTATGAGTGGGAAAAGCGAGGCGGCTGCGGCGGGCTCACGGCA
CGTTTGGGTGGGTAATTTGCCCAACGGCGTAAAGGAGGAGCATTTGCGGG
AGATTTTCAAGGGCTACGGTGGGGTGGAGTCTGTGAGGATGCTGCGACGG
ACCCCGCAGTCCATGACGGGCTTCTTGCATTTCAAGGAGACGGCAGAGGC
AATTCGCGCCAAAAAGGAATTGGACGGGAAACCCTTTGTCGGAGGAAAGC
TCCCACAGAACGCGATGAAGATCCAGTTCCAATCTAGAGGGATAAATCGC
CCGTTGCGGAGCATTCGCGTCCACAATTTGCCACCTAAGACGACCTCAGC
GGACTTGGTGGAGCTTTTTAGTGAGTTCGGGCGGGTGGAGGTGGCGGTGG
TCAATGTGAATTCCAATATTGGCTTTTTGGCGTTGGAGAACGTTGAGCAA
GCCGACCGAGCCATGGCCCGATGGCACGACAATGTGTGGCGGGGTAGGCA
CTTTTTTATTGATTATGCCTTGCGGGAAAATATCTCCAAGGAGGATCCTT
ATCCGCGGGGGGACCGAGATCGACTCGAGAGGGAGAGAGAGCGAAGTGCA
GGGGGGGGGGGAGAGGAGGAGGAGGAGGGGGAGGTCGTGAACGTGAGAGG
GAGAGGGAAAAGGAAAGAGAAAGGGAGAGGGAAAGGGAGCGAGAGCGGTC
GCGTGACCGAGGTAGGGAGCGCGAGCGAGAACGGTCGATGGAGGGGATTC
GGGAGGGGAGAGGAGGGCCGCCGCGGCCGTCACGGTATGATGACAGAGAC
AGGGACCGCATGCGTGGCCCCCCTCTGCCTTTTCCACAAGATATGCCACA
TATTCCCAACCGCTTGCTTGTGCTCCCCTCGGCAAGGGGCTGTCCCCCCT
TTGAGGTGTACGCGGAAGACTTGGAGAAGCTGCGAGAGTTGGTTGATTTG
ATGCAAAGCCACCTCGCGCCCCACCAACGACAAACCCTGGAAGATGCCCT
TCAAAACCGCGCACTATACGAAGGTATCACGCAACTCATCGGTCGCAACC
GTCGGGACATGGGTGCTGTCCTCCGTGACCTTCGCCTAGAGCTCGGCTTG
CCCCCCTCCGATCATCGGCGTGGCCCACCCTTACCACCATTACACCATCA
CCAACCTCCGCACACTTCTTTCCGTGATCATCCCATCCCTTCCCACCCTC
GCGACCGTGCCGCATCCATGCCTCTTCCTCCCCCTTTTCGGGATGGCCCA
TTTGGACCAGGGGGCGACCGAGGGCGAGATCTTCACCAAGACCGAGAGCG
CATGCGATATCATTCTCCTCCTCCCTCCGATTACCGTCGCTTTCCTCCTC
CAGGCCACCCTGACCACCATCTCCACCATTCCATTCCCCCTCCGCATCAC
TACGATCGCTCTTCTCCCCATGGTGGCTATCGAGATGACCCGCGGCTTTA
TTCCCCGGACCGACGTGGGGGGGAGCATCTGCCGCCTATCCCTCCGCCAG
GTTACCGCGACGACCGCCGCGGCCCTCCATCAGCTCTTCATCCCTCCTCC
TTGGGACCCCCTCCAATAG back to topCoding sequence (CDS) from alignment at chr5:362267..365085+ >NO05G01270.1 ID=NO05G01270.1|Name=NO05G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=2154bp|location=Sequence derived from alignment at chr5:362267..365085+ (Nannochloropsis oceanica)
ATGGCTTCATCCGTGGGCAGCAGCAGCACCAGCATCGCGAACCCCGCCTC
CCTCGCGACAGCTACTGCCTCGGCTCCTTCCGGCCTCCAGGCTCTCCTCG
TTTCCTCGCCCACCAACCAACCACAGCCCCGGAGCGGCCCTCCCGTAGCG
GAGGACCAGATTCAAAACACACTCAAGTGTCCTATATGCATCGATTGGTT
TACCGACCCCATCCTCCTTGACTGCAGCCATTCCCTCTGTCTGGACTGTG
CGCGCCGCCTGGCCCTCCATGATGGCGGGACAAACACCGCCGAGGTGACG
TGTCCGTTGTGCAAGGAAGTGACGGCGGTGACGGGTGGGGATAAGGCGCG
AGAAATGGAGGATGCACTGATCGCTGACGCGCTAAAGCGGTTCGACGTTG
TCCCTCCCAGGAAGAGCCGTGCCCGCATTGAAGACCTGCGAACCTGCTAC
GAGGCCTTTATCAAGAACGGCCTCGTAGCCATCGGTCCCAACGATGCTAA
GCCCACGGCCTTACACATGTGGCGCGCCGTCGTTGCGCGCATGGAAAGCC
AAACCGAAGAGGCCCTTGGCGAGAAGAGACCCGAGTCTCCCTCCGCATCC
AGAAACGCTGCCGACGCCACCAGCAGTATGTCTGCGGGGGAGGATGGGGA
GGAAGGGAGGGAGGGCATGGACGACCCGATGAAGCAGCTCCGATTTAAGA
AGAACATTTTGCTTGCGAACCTTGTCGCGCATTTTAGAGAGCAGCAAGAG
CAGCGTACCGGCAGTCCAGTTGCAGGTATTACCACATCTACGAGGGGCCT
CCAGGAAGAGGAAGAGGCCTACGACGACGACGTGTTCATGGAAGAGGGAG
GGGAGGGATCGGAGGACGGGGAGGTGACAGAAGATGGGAAGGGACATGGT
TCTGCACCCGTCAAGGAAGGAGGCGGAGAGGATGGAGGGTCAGGCAACAA
GCGGGGGTCTCGATGGGGTGGTATGAGTGGGAAAAGCGAGGCGGCTGCGG
CGGGCTCACGGCACGTTTGGGTGGGTAATTTGCCCAACGGCGTAAAGGAG
GAGCATTTGCGGGAGATTTTCAAGGGCTACGGTGGGGTGGAGTCTGTGAG
GATGCTGCGACGGACCCCGCAGTCCATGACGGGCTTCTTGCATTTCAAGG
AGACGGCAGAGGCAATTCGCGCCAAAAAGGAATTGGACGGGAAACCCTTT
GTCGGAGGAAAGCTCCCACAGAACGCGATGAAGATCCAGTTCCAATCTAG
AGGGATAAATCGCCCGTTGCGGAGCATTCGCGTCCACAATTTGCCACCTA
AGACGACCTCAGCGGACTTGGTGGAGCTTTTTAGTGAGTTCGGGCGGGTG
GAGGTGGCGGTGGTCAATGTGAATTCCAATATTGGCTTTTTGGCGTTGGA
GAACGTTGAGCAAGCCGACCGAGCCATGGCCCGATGGCACGACAATGTGT
GGCGGGGTAGGCACTTTTTTATTGATTATGCCTTGCGGGAAAATATCTCC
AAGGAGGATCCTTATCCGCGGGGGGACCGAGATCGACTCGAGAGGGAGAG
AGAGCGAAGTGCAGGGGGGGGGGGAGAGGAGGAGGAGGAGGGGGAGGTCG
TGAACGTGAGAGGGAGAGGGAAAAGGAAAGAGAAAGGGAGAGGGAAAGGG
AGCGAGAGCGGTCGCGTGACCGAGAGCTCGGCTTGCCCCCCTCCGATCAT
CGGCGTGGCCCACCCTTACCACCATTACACCATCACCAACCTCCGCACAC
TTCTTTCCGTGATCATCCCATCCCTTCCCACCCTCGCGACCGTGCCGCAT
CCATGCCTCTTCCTCCCCCTTTTCGGGATGGCCCATTTGGACCAGGGGGC
GACCGAGGGCGAGATCTTCACCAAGACCGAGAGCGCATGCGATATCATTC
TCCTCCTCCCTCCGATTACCGTCGCTTTCCTCCTCCAGGCCACCCTGACC
ACCATCTCCACCATTCCATTCCCCCTCCGCATCACTACGATCGCTCTTCT
CCCCATGGTGGCTATCGAGATGACCCGCGGCTTTATTCCCCGGACCGACG
TGGGGGGGAGCATCTGCCGCCTATCCCTCCGCCAGGTTACCGCGACGACC
GCCGCGGCCCTCCATCAGCTCTTCATCCCTCCTCCTTGGGACCCCCTCCA
ATAG back to top
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