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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:109919..114483 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00260.1 vs.
Match: CBJ29719.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 126.7 bits (317), Expect = 2.400e-25 Identity = 101/348 (29.02%), Postives = 168/348 (48.28%), Query Frame = 0
Query: 81 KKALLMAPSDLQGAVLVSGSLEEE------VFTLLNEQRVWNRITAFAADAVSARKRLTSRATRYSGVLDMLNLEEGDPHDLGVLESYLSSKPYSAWLDLSPEDADETRLLAKAKLAAATGIKFFVTAVSMSQARLEKQDLDLEAVEKVLRDAGIKFRILVTGQVIPAPATGYVRLNDTEALLPNATIARGDLARIATELFLVADEKPEAGVIYASEGDESVVGYLKYCREQGMNYKTEITDQLAGGLYTYKDKVAATMQEMADKAAGVLAKGAKKDTELYAAYRVNVTKAAIATEYD-KKRRTLVGMVKKIVGDILEEEYDDMYYSMRTK--EDLDLYKKANWQRAV 420
++A +A S G VLV+G L + VF +L Q W +I AF+ A+KRL SR +RYSG+LD+L EEGD +D +E L K SAWL D + ++ + A G+K V + ++S A D VE L+D+G+++ + G+V+ G V + + LP + R D+ R++ E F++ + A +GD+ + YLK R+ G + +TE++ ++GG Y+ A E A+K +K + E AAI + K++ + +V+K + LE+E++ ++S T E+ NW RA+
Sbjct: 50 QRAADIAMSADGGKVLVTGFLNSKQRTDQFVFDILQAQGRWEKIVAFSDSVSFAKKRLVSRKSRYSGLLDVLEFEEGDKYDAATMEEKL--KGISAWLCF---DCEGDKIKESVEFAKKAGVKSMVISSTVSAA-----DASSAGVEDALKDSGLEYTFIRVGEVVEGKEGGSVMVGNVTDELPMEQVVRDDIVRLSAEAFMMENATNTAFAF--GKGDDIALAYLKELRQNGTDRRTEMSTLISGGFLEYQ---AIKEAEEAEKNKPPPSKEELEAQEKAFQEEREAEYAAIREQNAIKRQEDDIKLVEKEAKEFLEKEWNAQFWSRTTSLTEEEYFEDDDNWDRAM 382
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00260.1 ID=NO05G00260.1|Name=NO05G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp ATGGCAGCACGTCGCTTTCTCGTGCCGCTTTCCCTATGCCTGGCGGCCGC CCGCGCCTTCCTTGTGGTGCCGCCACAGTCTGTCCTCAAGGCTGGAGATG TGGTCTCGATACCGGCACCCTTTTTTTCCTCCCCTCCCGCAATGCAGCAA GGGGGAAGGACGAAGGGGGCTCTCTTCTCCCTTGTTATCAACCCCAAGCG ACAAGGCATCTCCCAGCTGGGAATCGAGGAGATCAAGGCCAAAAAGGCGT TGTTGATGGCCCCGTCCGACCTGCAGGGGGCGGTGCTCGTATCCGGGTCC TTGGAGGAGGAGGTATTCACACTCTTGAACGAGCAGCGGGTGTGGAACCG GATCACGGCTTTTGCGGCCGATGCTGTTTCGGCCCGGAAGCGTTTGACTT CGCGCGCGACCCGATACTCGGGTGTGTTGGACATGCTGAACCTGGAGGAA GGCGACCCGCATGACTTGGGCGTGCTGGAGAGCTACCTCTCCTCCAAGCC GTATTCTGCTTGGCTCGACCTCTCGCCCGAAGACGCAGACGAGACGCGTC TGCTGGCCAAGGCCAAATTGGCAGCTGCCACAGGCATAAAGTTTTTCGTA ACGGCCGTGTCCATGTCCCAGGCAAGGCTGGAGAAGCAGGACCTGGATTT GGAGGCGGTGGAGAAGGTTCTCCGCGATGCCGGAATCAAATTTCGAATTC TCGTTACGGGTCAAGTCATCCCCGCCCCTGCCACAGGATACGTCCGCCTG AACGACACTGAGGCCCTGTTGCCCAACGCCACCATCGCCCGTGGGGACTT GGCTCGCATTGCCACCGAGCTTTTCCTCGTGGCAGACGAGAAACCGGAAG CCGGCGTCATCTACGCCTCGGAGGGCGACGAGAGCGTGGTGGGCTACCTC AAATACTGCCGCGAGCAGGGCATGAACTACAAGACCGAAATCACGGACCA GCTCGCCGGGGGCCTCTACACGTACAAGGATAAGGTGGCGGCCACTATGC AGGAAATGGCCGACAAGGCGGCGGGTGTCCTGGCCAAGGGTGCAAAAAAA GACACGGAGCTCTACGCCGCCTACCGTGTTAATGTGACCAAAGCAGCCAT TGCCACCGAGTACGACAAGAAACGCCGGACTCTTGTGGGGATGGTGAAAA AGATCGTGGGTGATATCTTAGAGGAGGAGTACGACGACATGTACTACTCC ATGCGCACTAAGGAAGACCTCGACCTCTACAAGAAGGCCAACTGGCAACG GGCCGTGAATCTGGTGCTGGGAATGCTCATGGGGAAAGGCGAGGAGGCCG GGGGCCGCGACAAGGCATCGCAGCGTCTGACGGGCTTTCAGGATCCGTAC CTCGGTCCTCAGTGGCACATCATCCGCAGCAACGCCGCGGTCATGATCAA GATCAAAGAGCTCCACGACGAGATCGGAGAGCGTCTTACTAAGGAGGATT GGGAGCGCTATGATATCCTGGAGGGCGACTTCATGGGCGACGAAGAAGCC GTCATGACCATGAAAATCGAAGAGAAGACGAAACGAAACAAGGATTATTT GCGCGAAACCCTAATTGCCCCCCCGCGACGCAAAGCCTCCCTTATCGTGG AGGTGGACGAAATCGATTCCTACCGCACGGCGTTGCTGGAGTCGGGCGCA GGGAGGAAAGGTGCTCTTCCTTCCCCGGCAGCGGACAAGGAGGAGGTGGA GGCGAGGAGCGTCGTGGTGGAGGTAGTGGACGAGGGCGGGAAGGAGGGAG AGGAATTGGCGGTAGCAGCGGCGCCGACGAAGAGAGGCAGGAAGCGCAAG ACGGCCGAAGGGGAGGAGTAA back to topprotein sequence of NO05G00260.1 >NO05G00260.1-protein ID=NO05G00260.1-protein|Name=NO05G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp MAARRFLVPLSLCLAAARAFLVVPPQSVLKAGDVVSIPAPFFSSPPAMQQ GGRTKGALFSLVINPKRQGISQLGIEEIKAKKALLMAPSDLQGAVLVSGS LEEEVFTLLNEQRVWNRITAFAADAVSARKRLTSRATRYSGVLDMLNLEE GDPHDLGVLESYLSSKPYSAWLDLSPEDADETRLLAKAKLAAATGIKFFV TAVSMSQARLEKQDLDLEAVEKVLRDAGIKFRILVTGQVIPAPATGYVRL NDTEALLPNATIARGDLARIATELFLVADEKPEAGVIYASEGDESVVGYL KYCREQGMNYKTEITDQLAGGLYTYKDKVAATMQEMADKAAGVLAKGAKK DTELYAAYRVNVTKAAIATEYDKKRRTLVGMVKKIVGDILEEEYDDMYYS MRTKEDLDLYKKANWQRAVNLVLGMLMGKGEEAGGRDKASQRLTGFQDPY LGPQWHIIRSNAAVMIKIKELHDEIGERLTKEDWERYDILEGDFMGDEEA VMTMKIEEKTKRNKDYLRETLIAPPRRKASLIVEVDEIDSYRTALLESGA GRKGALPSPAADKEEVEARSVVVEVVDEGGKEGEELAVAAAPTKRGRKRK TAEGEE* back to topmRNA from alignment at chr5:109919..114483+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00260.1 ID=NO05G00260.1|Name=NO05G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=4565bp|location=Sequence derived from alignment at chr5:109919..114483+ (Nannochloropsis oceanica) ATGGCAGCACGTCGCTTTCTCGTGCCGCTTTCCCTATGCCTGGCGGCCGC
CCGCGCCTTCCTTGTGGTGCCGCCACAGGTAAGGAGGGAGGGAGGGAAGA
CGGGCAGGATGATGATGGTGAAGCAGTAACGGGGAATTTAATCCCTTTAG
CATTGGCATCATGTGTCCTCGTCCCTGACCATATCCTTTTCCCTCCTCCT
GCCTTACTTGTGCAGTCTGTCCTCAAGGCTGGAGATGTGGTCTCGATACC
GGCACCCTTTTTTTCCTCCCCTCCCGCAATGCAGCAAGGGGGAAGGACGA
AGGGGGCTCTCTTCTCCCTTGTTATCAACCCCAAGCGACAAGGTGAGGAG
GGATATTAAAATGGAAGAGGAGAAGAAGGACAACCCCACATTCATAAGCA
GGAAGAAGATTAGATATGTACATGTCAATGAGGCACATATCCCTTGAATG
TGTATTGCTTCTCTGTCATCGCAGTGCCAAGTAAAGGGGGAAGGAGGCAA
GAGAGAGAGAGAAAAGTAGGAAACAGCCGGTCGAGTCACAACACTTATAA
TGTGAGACACTTCCTCAAATGACGAAACTGCATGGCAGGCATCTCCCAGC
TGGGAATCGAGGAGATCAAGGCCAAAAAGGCGTTGTTGATGGTAAGGCTC
GGTCGGGAAGGGAGGGAGAGAGGGAGGGAGAAGGAGGGAAGGACATCATC
GATCCAAGACCTGTCAGCACATTTTTCCTCTTTCTCCTCTCCGATTGCTC
ACCCCTCTCTCTTCCTTCCTTCCTTCCCTCCACCTCCCTCCCTCCCTCCA
ACTCTCCTCGCAGGCCCCGTCCGACCTGCAGGGGGCGGTGCTCGTATCCG
GGTCCTTGGAGGAGGAGGTATTCACACTCTTGAACGAGCAGCGGGTGTGG
AACCGGATCACGGCTTTTGCGGCCGATGCTGTTTCGGTGAGTAGGCGAAG
GAGGGAGGGAGGGAGGAGGGGGGAAGGGAGGAAGGGTGAAGGGAGGGAGG
GGGAAGGGAGGAAGTGAGGAAGGGAGGAGGGGAGGGAGGGAGAAGGGGAG
CGAGGGAGGGGGAGCGAGGGTGGGGGAGAGGGGGGGAGGGAGAGAGTGAG
GGAGGATGGGAGGTAAGAGAAAAGGCACATATATACACACGTAGACATCA
TGCCCACACAATCGTAACCTCTCTACACCCCCTCCACGCTATCCCTCCCT
CTCCCTCTCCCTCTCCCTCCAGGCCCGGAAGCGTTTGACTTCGCGCGCGA
CCCGATACTCGGGTGTGTTGGACATGCTGAACCTGGAGGAAGGCGACCCG
CATGACTTGGGCGTGCTGGAGGTAGGGAGGGAGGGTGGGAGGGAGGAAGA
AAGGGAAGGAGGCGGCCCGCATAACTTGAGCGTGCTGGAGGGAGGGAGGG
AGAGAGGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGAGGGAGCATTTCTG
TGAATCGGTGACGGCATTGGAGTGTCAGTGAGAGAGACCGCGTACAAACA
CCTCGCTCACTTCCTCTTCCCGCCGACAAACACTCCACTCATTCCTCACT
CTTCCTCCCTCAACTCACTCACTCTCTTCCCCTTCCCATCTCTTCCCTCC
CTCCCTTCCTCCCTCCAGAGCTACCTCTCCTCCAAGCCGTATTCTGCTTG
GCTCGACCTCTCGCCCGAAGACGCAGACGAGACGCGTCTGCTGGCCAAGG
CCAAATTGGCAGCTGCCACAGGCATAAAGTTTTTCGTAACGGCCGTGTCC
ATGTCCCAGGCAAGGCTGGAGAAGCAGGACCTGGATTTGGAGGCGGTGGA
GAAGGTGAGGAGAGGGGAGGGAGGGAAGAAGGGAGGGAGGGAGAGGGGGA
GGAAAGAGGGAGAGAGACTCTGGAGTCGGTCGAGGGGACATGTCCAAGAG
CACCTCCTATTTTTTCTCTTTGTTCTCATTCCCGTGTTTGTCCCCTCCCT
CCCTCCCTCCCTCCCTCCTCCTTCAGGTTCTCCGCGATGCCGGAATCAAA
TTTCGAATTCTCGTTACGGGTCAAGTCATCCCCGCCCCTGCCACAGTACG
TCCCCTCCCTCCTTCCCTCACTTTCCCCCTCCCTCCACTCCCTGTACCTT
TCACGTACTTCCTTTCGTCTTCGCCCGCCCTCCCTCCCGCCCTCCCTCCC
GCCCTCCCTCCCTCCCTTCTGGCCCCGTCCTTCCCTTCCTTTCACTCCCA
CTCCCCCCTCTCCTCCCCTTACTCCCTCCCGCCCTCCCTCCCTCCACCTC
AGGGATACGTCCGCCTGAACGACACTGAGGCCCTGTTGCCCAACGCCACC
ATCGCCCGTGGGGACTTGGCTCGCATTGCCACCGAGCTTTTCCTCGTGGC
AGACGAGAAACCGGAAGCCGGCGTCATCTACGGTACTTCCCTGCTTCCCT
CCCTCCCTCCCTCCCTCCCTCTCTGTGTGGGTCCCCCACTCCCTCCCCTG
CCCTCCCTCCCCTCCTTGCCTTCATTCATGACATACTTCCTCCCGTCTCC
CTCCCTCCCTCCGTCCCTCCGTCCCTCCTTCCCTCCTTGCCTCTTCCCCT
CCCTCAGCCTCGGAGGGCGACGAGAGCGTGGTGGGCTACCTCAAATACTG
CCGCGAGCAGGGCATGAACTACAAGACCGAAATCACGGACCAGCTCGCCG
GGGGCCTCTACACGTACAAGGATAAGGTGGCGGCCACTATGCAGGTAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAATATGGAGGGAGAGAG
GGAGAACTGACTTGAATGCGGTCCACCGTCCGAGGAGATGCATCCTCTCA
ACCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCTCCCAAGGAAA
TGGCCGACAAGGCGGCGGGTGTCCTGGCCAAGGGTGCAAAAAAAGACACG
GAGCTCTACGCCGCCTACCGTGTTAATGTGACCAAAGCAGCCATTGCCAC
CGAGTACGACAAGAAACGCCGGACTCTTGTGGTGCGGCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCCCTTCCTCCCT
CCCTCCCGTTGGCACCCCCCTCCCCATCATTCCTCTTCTATCTCGCGCTG
TTCAAAAAACGCTCATCCCGTATCCTCCTTCCCTCCCTCCCTCCCTTCCT
CCCTCTCTCCCTCCCTCCCTCCTCCCCAGGGGATGGTGAAAAAGATCGTG
GGTGATATCTTAGAGGAGGAGTACGACGACATGTACTACTCCATGCGCAC
TAAGGAAGACCTCGACCTCTACAAGAAGGCCAACTGGTACGTCCCCCCCC
CCTCCCTCCCTCCTTCCCTTCCTATTCTCCCTCTCTCTTCCGATGTATCT
CATGTTCTTTGTTATGTTATATTTCGTATGTATTGACATCCTATCGTATC
TACCTATTCAGGCAACGGGCCGTGAATCTGGTGCTGGGAATGCTCATGGG
GAAAGGCGAGGAGGCCGGGGGCCGCGACAAGGTAGGGAGAGAGAGAGGGG
AGGAGGAAGGGAGGGAAGACTAGGAGAAAGAGTGAGAGTAAATAAAAGTT
GAAAAGGAAAGGTCTTTTAAACTCGCTCCCCCCCTATCCCCCTTCCTCAG
GCATCGCAGCGTCTGACGGGCTTTCAGGATCCGTACCTCGGTCCTCAGTG
GCACATCATCCGCAGCAACGCCGCGGTCATGATCAAGATCAAGTAAGGCC
CGGCCTGGGAGGACATGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGA
AAAAGAGTAGAGGTACAGAGAGAATGGGAGGGAGCGGAAAGGTAGGAGGG
GAATATGCATGAGGGAGGGATGGAAGGAAGGGGGGGCATGCGGCATGACG
TGTACTTACTCTCTCCCTCTCTCCTCTTCCATTTTCTCTCTCCCTTTCTC
TCCTTCTTTCCCACGTACACCCACCACGACCACAGAGAGCTCCACGACGA
GATCGGAGAGCGTCTTACTAAGGAGGATTGGGAGCGGTACGTGCCCCCCC
CCTCTCTTTCCCCTTCTCGCTCCTCTTCTTCCTTCCTCCCCTCCCTCCCT
CCCTATTGATTCGGCCAGCGGAAGAAAGGGCAAGCCTCCTTATCCTTTCC
CTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCCTA
GCTATGATATCCTGGAGGGCGACTTCATGGGCGACGAAGAAGCCGTCATG
ACCATGAAAATCGAAGAGAAGACGAAACGAAACAAGGATTATTTGCGCGA
AACCCTAATTGCCCCCCCGCGACGCAAAGCCTCCCTTATCGTGGAGGTGG
ACGAAATCGATTCCTACCGCACGGCGTTGCTGGAGTCGGGCGCAGGGAGG
AAAGGTGCTCTTCCTTCCCCGGCAGCGGACAAGGAGGAGGTGGAGGCGAG
GAGCGTCGTGGTGGAGGTAGTGGACGAGGGCGGGAAGGAGGGAGAGGAAT
TGGCGGTAGCAGCGGCGCCGACGAAGAGAGGCAGGAAGCGCAAGACGGCC
GAAGGGGAGGAGTAA back to topCoding sequence (CDS) from alignment at chr5:109919..114483+ >NO05G00260.1 ID=NO05G00260.1|Name=NO05G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=1821bp|location=Sequence derived from alignment at chr5:109919..114483+ (Nannochloropsis oceanica) ATGGCAGCACGTCGCTTTCTCGTGCCGCTTTCCCTATGCCTGGCGGCCGC CCGCGCCTTCCTTGTGGTGCCGCCACAGTCTGTCCTCAAGGCTGGAGATG TGGTCTCGATACCGGCACCCTTTTTTTCCTCCCCTCCCGCAATGCAGCAA GGGGGAAGGACGAAGGGGGCTCTCTTCTCCCTTGTTATCAACCCCAAGCG ACAAGGCATCTCCCAGCTGGGAATCGAGGAGATCAAGGCCAAAAAGGCGT TGTTGATGGCCCCGTCCGACCTGCAGGGGGCGGTGCTCGTATCCGGGTCC TTGGAGGAGGAGGTATTCACACTCTTGAACGAGCAGCGGGTGTGGAACCG GATCACGGCTTTTGCGGCCGATGCTGTTTCGGCCCGGAAGCGTTTGACTT CGCGCGCGACCCGATACTCGGGTGTGTTGGACATGCTGAACCTGGAGGAA GGCGACCCGCATGACTTGGGCGTGCTGGAGAGCTACCTCTCCTCCAAGCC GTATTCTGCTTGGCTCGACCTCTCGCCCGAAGACGCAGACGAGACGCGTC TGCTGGCCAAGGCCAAATTGGCAGCTGCCACAGGCATAAAGTTTTTCGTA ACGGCCGTGTCCATGTCCCAGGCAAGGCTGGAGAAGCAGGACCTGGATTT GGAGGCGGTGGAGAAGGTTCTCCGCGATGCCGGAATCAAATTTCGAATTC TCGTTACGGGTCAAGTCATCCCCGCCCCTGCCACAGGATACGTCCGCCTG AACGACACTGAGGCCCTGTTGCCCAACGCCACCATCGCCCGTGGGGACTT GGCTCGCATTGCCACCGAGCTTTTCCTCGTGGCAGACGAGAAACCGGAAG CCGGCGTCATCTACGCCTCGGAGGGCGACGAGAGCGTGGTGGGCTACCTC AAATACTGCCGCGAGCAGGGCATGAACTACAAGACCGAAATCACGGACCA GCTCGCCGGGGGCCTCTACACGTACAAGGATAAGGTGGCGGCCACTATGC AGGAAATGGCCGACAAGGCGGCGGGTGTCCTGGCCAAGGGTGCAAAAAAA GACACGGAGCTCTACGCCGCCTACCGTGTTAATGTGACCAAAGCAGCCAT TGCCACCGAGTACGACAAGAAACGCCGGACTCTTGTGGGGATGGTGAAAA AGATCGTGGGTGATATCTTAGAGGAGGAGTACGACGACATGTACTACTCC ATGCGCACTAAGGAAGACCTCGACCTCTACAAGAAGGCCAACTGGCAACG GGCCGTGAATCTGGTGCTGGGAATGCTCATGGGGAAAGGCGAGGAGGCCG GGGGCCGCGACAAGGCATCGCAGCGTCTGACGGGCTTTCAGGATCCGTAC CTCGGTCCTCAGTGGCACATCATCCGCAGCAACGCCGCGGTCATGATCAA GATCAAAGAGCTCCACGACGAGATCGGAGAGCGTCTTACTAAGGAGGATT GGGAGCGCTATGATATCCTGGAGGGCGACTTCATGGGCGACGAAGAAGCC GTCATGACCATGAAAATCGAAGAGAAGACGAAACGAAACAAGGATTATTT GCGCGAAACCCTAATTGCCCCCCCGCGACGCAAAGCCTCCCTTATCGTGG AGGTGGACGAAATCGATTCCTACCGCACGGCGTTGCTGGAGTCGGGCGCA GGGAGGAAAGGTGCTCTTCCTTCCCCGGCAGCGGACAAGGAGGAGGTGGA GGCGAGGAGCGTCGTGGTGGAGGTAGTGGACGAGGGCGGGAAGGAGGGAG AGGAATTGGCGGTAGCAGCGGCGCCGACGAAGAGAGGCAGGAAGCGCAAG ACGGCCGAAGGGGAGGAGTAA back to top
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