NO04G03460.1, NO04G03460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03460.1
Unique NameNO04G03460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length435
Alignment locationchr4:946823..947257 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:946823..947257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03460.1 vs.
Match: EWM28795.1 (protein kinase c1 inhibitor [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 5.400e-48
Identity = 92/140 (65.71%), Postives = 114/140 (81.43%), Query Frame = 0 
Query:    1 MTDPSCVFCNIIAGNAPAHKVYEDEHNVAFLDIHPLADFHTLLIPKHHVARMEDIDDASAAALGIAVKRLSRIVHRLTGNRDFNILLANGQQAGQEVRHSHYHFIPREGRQDGLGYRWKTGRLPSQERIKDFCRKALSFF 141
            M + +CVFC+I A NAPAH+VYED+  +AFLD +PLADFHTLLIPK HV   ED DDA+AAA+G+++KRLS I+  L G  DFNILL+NG++AGQEV HSH+H IPREGRQDGLGYRWK G+LP+Q  I DFC KA++ +
Sbjct:  117 MGEGNCVFCSIAARNAPAHRVYEDDMTLAFLDTNPLADFHTLLIPKRHVTSFEDCDDAAAAAMGVSLKRLSCIMRELRG--DFNILLSNGKKAGQEVWHSHFHLIPREGRQDGLGYRWKAGQLPAQVEITDFCDKAMALY 254
The following BLAST results are available for this feature:
BLAST of NO04G03460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28795.15.400e-4865.71protein kinase c1 inhibitor [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03460NO04G03460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03460.1NO04G03460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03460.1.cds1NO04G03460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03460.1 ID=NO04G03460.1|Name=NO04G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=435bp
ATGACAGACCCTAGTTGCGTCTTCTGTAACATCATCGCGGGCAATGCACC
GGCGCACAAAGTGTACGAGGATGAGCACAATGTGGCCTTCCTAGACATCC
ACCCCCTCGCCGATTTCCACACGCTCTTGATTCCAAAGCACCACGTCGCC
CGTATGGAAGACATCGATGATGCCAGTGCTGCTGCCTTGGGAATCGCCGT
CAAACGGCTCAGTCGGATTGTCCACCGATTGACCGGGAACAGGGACTTCA
ATATTCTTCTTGCCAACGGGCAACAGGCTGGGCAAGAAGTGAGGCACTCG
CATTACCATTTCATCCCGCGAGAAGGGCGACAAGACGGCCTAGGCTATCG
GTGGAAAACCGGGCGACTACCATCGCAAGAGAGGATCAAAGACTTTTGCA
GAAAAGCCTTGTCCTTTTTCGCTTATGCAGGATGA
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protein sequence of NO04G03460.1

>NO04G03460.1-protein ID=NO04G03460.1-protein|Name=NO04G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MTDPSCVFCNIIAGNAPAHKVYEDEHNVAFLDIHPLADFHTLLIPKHHVA
RMEDIDDASAAALGIAVKRLSRIVHRLTGNRDFNILLANGQQAGQEVRHS
HYHFIPREGRQDGLGYRWKTGRLPSQERIKDFCRKALSFFAYAG*
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mRNA from alignment at chr4:946823..947257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03460.1 ID=NO04G03460.1|Name=NO04G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=435bp|location=Sequence derived from alignment at chr4:946823..947257- (Nannochloropsis oceanica)
ATGACAGACCCTAGTTGCGTCTTCTGTAACATCATCGCGGGCAATGCACC
GGCGCACAAAGTGTACGAGGATGAGCACAATGTGGCCTTCCTAGACATCC
ACCCCCTCGCCGATTTCCACACGCTCTTGATTCCAAAGCACCACGTCGCC
CGTATGGAAGACATCGATGATGCCAGTGCTGCTGCCTTGGGAATCGCCGT
CAAACGGCTCAGTCGGATTGTCCACCGATTGACCGGGAACAGGGACTTCA
ATATTCTTCTTGCCAACGGGCAACAGGCTGGGCAAGAAGTGAGGCACTCG
CATTACCATTTCATCCCGCGAGAAGGGCGACAAGACGGCCTAGGCTATCG
GTGGAAAACCGGGCGACTACCATCGCAAGAGAGGATCAAAGACTTTTGCA
GAAAAGCCTTGTCCTTTTTCGCTTATGCAGGATGA
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Coding sequence (CDS) from alignment at chr4:946823..947257-

>NO04G03460.1 ID=NO04G03460.1|Name=NO04G03460.1|organism=Nannochloropsis oceanica|type=CDS|length=435bp|location=Sequence derived from alignment at chr4:946823..947257- (Nannochloropsis oceanica)
ATGACAGACCCTAGTTGCGTCTTCTGTAACATCATCGCGGGCAATGCACC
GGCGCACAAAGTGTACGAGGATGAGCACAATGTGGCCTTCCTAGACATCC
ACCCCCTCGCCGATTTCCACACGCTCTTGATTCCAAAGCACCACGTCGCC
CGTATGGAAGACATCGATGATGCCAGTGCTGCTGCCTTGGGAATCGCCGT
CAAACGGCTCAGTCGGATTGTCCACCGATTGACCGGGAACAGGGACTTCA
ATATTCTTCTTGCCAACGGGCAACAGGCTGGGCAAGAAGTGAGGCACTCG
CATTACCATTTCATCCCGCGAGAAGGGCGACAAGACGGCCTAGGCTATCG
GTGGAAAACCGGGCGACTACCATCGCAAGAGAGGATCAAAGACTTTTGCA
GAAAAGCCTTGTCCTTTTTCGCTTATGCAGGATGA
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Synonyms
Publications