NO04G03140.1, NO04G03140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03140.1
Unique NameNO04G03140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1395
Alignment locationchr4:857311..859270 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:857311..859270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03140.1 vs.
Match: EWM28757.1 (sphingosine kinase [Nannochloropsis gaditana])

HSP 1 Score: 487.6 bits (1254), Expect = 4.100e-134
Identity = 258/462 (55.84%), Postives = 339/462 (73.38%), Query Frame = 0 
Query:    6 SFIDYRTQKLVRLVMDGIEPYIDIEGSVRTLLRDVVGSSVIETLDQTQGCKLLVFAYPRRTDRNCLCGNKRLSLERQAQHLRLTAPASSVAKHWDALIKK--WCRG--GHQGGEEDTQLQRR--RRRLLVLVNPKSGKQQAHSIYTAVVAPMLAQADIEHEMVVTMRMQHAKDMIYALDVEAWDGVVAIGGDGLLSDVINGLFSRDPENQRALLELPVAIVNGGTGNGFFSSLLHRQNEAFNPISATFLLLKAKSTLPADLSLVETADGQRHISFLSLSFGLIADVDLESEVIRWAGALRMDLFSLYAIFRSRTYRARLSFWSCEEGESSFADAIHLPPLHTPLPMKNEWISIEDDFLTILISHVSHIAEAVHSAPGKKMGDGTFQLMVLRRQSSLSRMRLISLFMALEHGDHVPLKEVEIYHARAYRLEPLTDQGRYSLDGETIPFGHVQGKILPLALQVL 462
            +FID  ++K V+LV+ G +P I++ G ++  L DV+GS+VIET  Q++G KLLV+AYPR   R   CG      +R+ Q+L    P + +AK WD  IK+  W       Q G + T   +R  +RRLLV++NP +G+ Q+ ++YT+VVAPML QA + HE+VVT + Q AK +++ L+ EAWD VVAIGGDGLLS+++ GL+S+DP +   L  LP+AIV  GTGNG  +S L++Q E   PI+A FL+LKAKST+PADLSLVE +DGQR +SFL+LSFGL+ADVDLESEVIRWAG+ RMDLF+LYAI R R+YRARLS+   +EG    A A  LPPL   LP  + W+ +E DFL +LISHVSHIAE+ HS PGK+MGDGT Q++VLRRQ SLSR+RLISLF+ALE G HV   EVEIY+A AYRLE LT++G Y+LDGE +P G +QG+ILP A+++L
Sbjct:  119 AFIDLISKKRVQLVIKGGDPCIEVGGGLQVSLYDVIGSAVIET-QQSEGTKLLVYAYPRSVGRQYPCGKVYPIAKRRPQYLHFMTPKAQLAKRWDQRIKELAWRESWLSRQDGLDGTHKSKRWRQRRLLVVLNPAAGRGQSQAVYTSVVAPMLEQAGVAHELVVTRKAQEAKSLMHNLNTEAWDCVVAIGGDGLLSEIVQGLYSQDPVSCHPLTRLPLAIVPSGTGNGMAASFLYQQAEVPCPINAMFLILKAKSTVPADLSLVEASDGQR-MSFLALSFGLVADVDLESEVIRWAGSFRMDLFALYAILRLRSYRARLSYLPSKEGPPPRAAA--LPPLRARLPDASGWVHMEHDFLMVLISHVSHIAESAHSNPGKRMGDGTLQILVLRRQPSLSRLRLISLFLALERGYHVTADEVEIYNAVAYRLESLTERGVYTLDGEAVPCGSIQGRILPQAMRIL 576
The following BLAST results are available for this feature:
BLAST of NO04G03140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28757.14.100e-13455.84sphingosine kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03140NO04G03140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03140.1NO04G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03140.1.cds1NO04G03140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03140.1.cds2NO04G03140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03140.1.cds3NO04G03140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03140.1.cds4NO04G03140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03140.1 ID=NO04G03140.1|Name=NO04G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp
ATGACTGCGACCACATCTTTCATTGACTACAGGACGCAAAAGCTTGTCCG
CTTGGTTATGGACGGCATTGAACCTTATATCGACATCGAGGGCAGTGTGC
GCACTTTGCTTAGGGACGTGGTGGGGTCTTCTGTAATCGAGACTCTCGAT
CAAACGCAAGGCTGCAAGCTCCTCGTGTTCGCCTACCCCCGCAGGACGGA
TCGGAACTGTCTTTGCGGCAACAAACGGCTGTCCTTGGAGCGGCAGGCCC
AACACCTCAGGTTAACAGCACCAGCATCCAGTGTTGCAAAGCACTGGGAC
GCGTTGATCAAGAAATGGTGTCGGGGAGGACACCAGGGTGGTGAGGAAGA
CACCCAACTGCAGCGGCGACGGAGACGACTGCTCGTTTTGGTAAATCCGA
AGTCAGGAAAGCAGCAAGCACATTCCATCTACACCGCCGTGGTCGCCCCT
ATGCTCGCTCAAGCAGACATAGAGCACGAGATGGTCGTGACAATGCGCAT
GCAGCACGCCAAGGATATGATATACGCGCTGGACGTGGAAGCGTGGGATG
GCGTCGTCGCCATAGGAGGAGATGGTCTCCTTAGCGATGTTATTAATGGG
CTTTTCTCTCGTGACCCTGAAAACCAACGCGCCCTTTTGGAGCTTCCGGT
GGCCATTGTTAACGGTGGTACAGGAAACGGATTCTTCTCTTCCCTTCTTC
ACCGGCAAAACGAGGCCTTCAATCCAATCTCTGCCACTTTCCTTTTGCTA
AAAGCAAAGTCTACATTGCCTGCGGACCTCTCGCTCGTCGAGACGGCAGA
TGGCCAGCGGCACATCAGCTTTCTGTCCCTCTCTTTCGGGCTTATAGCCG
ACGTTGATTTGGAAAGTGAAGTAATTAGGTGGGCAGGGGCGTTACGAATG
GACTTATTCTCTCTCTACGCTATTTTTAGGAGTAGGACATACCGCGCCCG
GCTTAGTTTTTGGTCATGCGAGGAGGGAGAAAGCTCCTTCGCCGACGCCA
TTCATCTACCGCCGCTACACACGCCGCTCCCAATGAAGAACGAATGGATC
AGCATAGAGGATGATTTTTTAACGATATTGATCTCGCATGTGAGTCATAT
CGCAGAAGCGGTGCATTCAGCACCTGGGAAGAAGATGGGCGACGGGACTT
TCCAGCTTATGGTATTACGCCGGCAGTCTTCTCTCTCTCGCATGCGGCTC
ATTTCTCTCTTCATGGCACTGGAGCACGGGGACCACGTACCTTTAAAGGA
AGTGGAAATTTATCATGCCCGGGCATATCGGCTGGAGCCCTTGACAGATC
AGGGACGCTACTCGCTCGATGGAGAGACCATCCCCTTTGGACACGTGCAA
GGCAAGATCCTTCCTCTCGCCCTGCAAGTACTCTGCGATTCGTAG
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protein sequence of NO04G03140.1

>NO04G03140.1-protein ID=NO04G03140.1-protein|Name=NO04G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MTATTSFIDYRTQKLVRLVMDGIEPYIDIEGSVRTLLRDVVGSSVIETLD
QTQGCKLLVFAYPRRTDRNCLCGNKRLSLERQAQHLRLTAPASSVAKHWD
ALIKKWCRGGHQGGEEDTQLQRRRRRLLVLVNPKSGKQQAHSIYTAVVAP
MLAQADIEHEMVVTMRMQHAKDMIYALDVEAWDGVVAIGGDGLLSDVING
LFSRDPENQRALLELPVAIVNGGTGNGFFSSLLHRQNEAFNPISATFLLL
KAKSTLPADLSLVETADGQRHISFLSLSFGLIADVDLESEVIRWAGALRM
DLFSLYAIFRSRTYRARLSFWSCEEGESSFADAIHLPPLHTPLPMKNEWI
SIEDDFLTILISHVSHIAEAVHSAPGKKMGDGTFQLMVLRRQSSLSRMRL
ISLFMALEHGDHVPLKEVEIYHARAYRLEPLTDQGRYSLDGETIPFGHVQ
GKILPLALQVLCDS*
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mRNA from alignment at chr4:857311..859270+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03140.1 ID=NO04G03140.1|Name=NO04G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1960bp|location=Sequence derived from alignment at chr4:857311..859270+ (Nannochloropsis oceanica)
ATGACTGCGACCACATCTTTCATTGACTACAGGACGCAAAAGGTAAGGAG
AGTATCGCGACTGGATGATCCTTGCATGATGCTTCAACAGAGCCGACTAT
ACAGCCCGCAATTTTCGGCCAACAGCACACCAGCAGCCGTCCACCGAACC
CTTCAATAACAAGGGTTCTAGCCCGCCGCATCTTCTGTTTCCTAGATAAG
CAGGCAATCCGAAATGGTGCTGTTGAAACCTTCGATCTGAATCAGCTCAT
CTTTGCCAGTCCTGCCTCACCGCTTGGCCATGAAGTATCAACAAAATCAC
TTCTCTCGTTGTCCTTCAACCCACACACATATGATAGCTTGTCCGCTTGG
TTATGGACGGCATTGAACCTTATATCGACATCGAGGGCAGTGTGCGCACT
TTGCTTAGGGACGTGGTGGGGTCTTCTGTAATCGAGACTCTCGATCAAAC
GCAAGGCTGCAAGCTCCTCGTGTTCGCCTACCCCCGCAGGACGGATCGGA
ACTGTCTTTGCGGCAACAAACGGCTGTCCTTGGAGCGGCAGGCCCAACAC
CTCAGGTTAACAGCACCAGCATCCAGTGTTGCAAAGCACTGGGACGCGTT
GATCAAGAAATGGTGTCGGGGAGGACACCAGGGTGGTGAGGAAGACACCC
AACTGCAGCGGCGACGGAGACGACTGGTAAGAAAGCAAGCGGGTGAGTGG
AATGTGAGGCGGCAGAACAGAAGTCTCTTTTCATTTGAAGTGGAATCAAT
TCCTACTTGCATCGCTTCGAAACTCCTAAATCCTATATACAGCTCGTTTT
GGTAAATCCGAAGTCAGGAAAGCAGCAAGCACATTCCATCTACACCGCCG
TGGTCGCCCCTATGCTCGCTCAAGCAGACATAGAGCACGAGATGGTCGTG
ACAATGCGCATGCAGCACGCCAAGGATATGATATACGCGCTGGACGTGGA
AGCGTGGGATGGCGTCGTCGCCATAGGAGGAGATGGTCTCCTTAGCGATG
TTATTAATGGGCTTTTCTCTCGTGACCCTGAAAACCAACGCGCCCTTTTG
GAGCTTCCGGTGGCCATTGTTAACGGTGGTACAGGAAACGGATTCTTCTC
TTCCCTTCTTCACCGGCAAAACGAGGCCTTCAATCCAATCTCTGCCACTT
TCCTTTTGCTAAAAGCAAAGTCTACATTGCCTGCGGACCTCTCGCTCGTC
GAGACGGCAGATGGCCAGCGGCACATCAGCTTTCTGTCCCTCTCTTTCGG
GCTTATAGCCGACGTTGATTTGGAAAGTGAAGTAATTAGGTGGGCAGGGG
CGTTACGAATGGACTTATTCTCTCTCTACGCTATTTTTAGGAGTAGGACA
TACCGCGCCCGGCTTAGTTTTTGGTCATGCGAGGAGGGAGAAAGCTCCTT
CGCCGACGCCATTCATCTACCGCCGCTACACACGCCGCTCCCAATGAAGA
ACGAATGGATCAGCATAGAGGATGATTTTTTAACGGTACGTGCGAAGGGT
GCGATATGCATAGAGAGCGGACGGAATAATTTAATCGAGGGTGATAAGCT
GTGTCATTGACAAGAGGGCCAGTTATTCCCCTACTGTGCGTCACTCACAT
ACAACTGTCTGTTCATTCCCACCCCTTCAAAAAACATAGATATTGATCTC
GCATGTGAGTCATATCGCAGAAGCGGTGCATTCAGCACCTGGGAAGAAGA
TGGGCGACGGGACTTTCCAGCTTATGGTATTACGCCGGCAGTCTTCTCTC
TCTCGCATGCGGCTCATTTCTCTCTTCATGGCACTGGAGCACGGGGACCA
CGTACCTTTAAAGGAAGTGGAAATTTATCATGCCCGGGCATATCGGCTGG
AGCCCTTGACAGATCAGGGACGCTACTCGCTCGATGGAGAGACCATCCCC
TTTGGACACGTGCAAGGCAAGATCCTTCCTCTCGCCCTGCAAGTACTCTG
CGATTCGTAG
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Coding sequence (CDS) from alignment at chr4:857311..859270+

>NO04G03140.1 ID=NO04G03140.1|Name=NO04G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at chr4:857311..859270+ (Nannochloropsis oceanica)
ATGACTGCGACCACATCTTTCATTGACTACAGGACGCAAAAGCTTGTCCG
CTTGGTTATGGACGGCATTGAACCTTATATCGACATCGAGGGCAGTGTGC
GCACTTTGCTTAGGGACGTGGTGGGGTCTTCTGTAATCGAGACTCTCGAT
CAAACGCAAGGCTGCAAGCTCCTCGTGTTCGCCTACCCCCGCAGGACGGA
TCGGAACTGTCTTTGCGGCAACAAACGGCTGTCCTTGGAGCGGCAGGCCC
AACACCTCAGGTTAACAGCACCAGCATCCAGTGTTGCAAAGCACTGGGAC
GCGTTGATCAAGAAATGGTGTCGGGGAGGACACCAGGGTGGTGAGGAAGA
CACCCAACTGCAGCGGCGACGGAGACGACTGCTCGTTTTGGTAAATCCGA
AGTCAGGAAAGCAGCAAGCACATTCCATCTACACCGCCGTGGTCGCCCCT
ATGCTCGCTCAAGCAGACATAGAGCACGAGATGGTCGTGACAATGCGCAT
GCAGCACGCCAAGGATATGATATACGCGCTGGACGTGGAAGCGTGGGATG
GCGTCGTCGCCATAGGAGGAGATGGTCTCCTTAGCGATGTTATTAATGGG
CTTTTCTCTCGTGACCCTGAAAACCAACGCGCCCTTTTGGAGCTTCCGGT
GGCCATTGTTAACGGTGGTACAGGAAACGGATTCTTCTCTTCCCTTCTTC
ACCGGCAAAACGAGGCCTTCAATCCAATCTCTGCCACTTTCCTTTTGCTA
AAAGCAAAGTCTACATTGCCTGCGGACCTCTCGCTCGTCGAGACGGCAGA
TGGCCAGCGGCACATCAGCTTTCTGTCCCTCTCTTTCGGGCTTATAGCCG
ACGTTGATTTGGAAAGTGAAGTAATTAGGTGGGCAGGGGCGTTACGAATG
GACTTATTCTCTCTCTACGCTATTTTTAGGAGTAGGACATACCGCGCCCG
GCTTAGTTTTTGGTCATGCGAGGAGGGAGAAAGCTCCTTCGCCGACGCCA
TTCATCTACCGCCGCTACACACGCCGCTCCCAATGAAGAACGAATGGATC
AGCATAGAGGATGATTTTTTAACGATATTGATCTCGCATGTGAGTCATAT
CGCAGAAGCGGTGCATTCAGCACCTGGGAAGAAGATGGGCGACGGGACTT
TCCAGCTTATGGTATTACGCCGGCAGTCTTCTCTCTCTCGCATGCGGCTC
ATTTCTCTCTTCATGGCACTGGAGCACGGGGACCACGTACCTTTAAAGGA
AGTGGAAATTTATCATGCCCGGGCATATCGGCTGGAGCCCTTGACAGATC
AGGGACGCTACTCGCTCGATGGAGAGACCATCCCCTTTGGACACGTGCAA
GGCAAGATCCTTCCTCTCGCCCTGCAAGTACTCTGCGATTCGTAG
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Synonyms
Publications