NO04G02830.1, NO04G02830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02830.1
Unique NameNO04G02830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1402
Alignment locationchr4:747494..749310 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:747494..749310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G02830.1 vs.
Match: EWM28722.1 (glycerophosphodiester phosphodiesterase domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 508.4 bits (1308), Expect = 2.000e-140
Identity = 266/411 (64.72%), Postives = 319/411 (77.62%), Query Frame = 0 
Query:    1 MPPTDGFASESFSCPMIMLLWSWVIFCCTSMILHHFPSLLHRPKRRIQSNSTVAETRPAVAATMPAERHNPGVTPVSDVKVASRP-IDPRFCVQHIAHRGCRKEGIPENTLTAFAHAVAAGCDVIELDVWLTIDERVVVFHDSDLERMCGTQAAAAAAATVAARRAVSANAKQEQGQKENIGVSDLNYDELPKIKLNGE-HWAVNDKNRKHACRIPLFSEVLELIPLDKPMIVEVKQRDPILIRKVHDMILNKGRRDQTIWFSLAEDINADLRAYDPTIPNITSVLGMLKCILLYYTGLLPFVRLDSDILGIPVDHVDYARVREQKALKALPDALCWVLAFVLGGKPPLALIPPGLFKHLRARGIPIFFLGVNDEENLKVAEWAGSTAVLTDRPQWLRKCMADGKVALKRL 410
            M  T+   S S +  MI L+  +V FC  S++LHHFP+LLHRPK+R+       ET   V +     + + G +    + VA +  +DPRF VQHIAHRG R EG+PENTL +FAHAVAAG DVIELDVWLT DE+VVVFHD+DLERMCG  A+ AA ATV AR A +      +  + +IG+ DL + ELP+I L+ E HWAV+  NR  ACRIPLFSEVL L+P  K MIVEVKQ+  +LIRKVH++I+ +GR ++TIWFSL+EDINADLRAYDP+IPNI+SV+GMLKCI  YYTG+LPFVRL+ DILGIP+D VDYARVREQKALKALPDA+C +LAFVLGGKPP ALIPPGLFKHLRARGIPIFFLGVNDEE+LKVAE AGSTAVLTDRP+WL + M +GKVALK+L
Sbjct:    1 MELTEILGSVSNASVMIHLIGMYVTFCIVSILLHHFPALLHRPKKRLYEPVVQPETLDPVKSKSLCCKVSTGTS----ISVAMKSNVDPRFRVQHIAHRGSRLEGLPENTLASFAHAVAAGSDVIELDVWLTKDEKVVVFHDADLERMCGAPASRAALATVDAREATTKPGTTRE--RRSIGIPDLLFHELPEISLDSEAHWAVDAGNRAEACRIPLFSEVLALVPPHKTMIVEVKQKSAVLIRKVHELIVARGRLERTIWFSLSEDINADLRAYDPSIPNISSVVGMLKCIFFYYTGILPFVRLNEDILGIPIDRVDYARVREQKALKALPDAVCAILAFVLGGKPPSALIPPGLFKHLRARGIPIFFLGVNDEEDLKVAEVAGSTAVLTDRPRWLSQRMMEGKVALKQL 405
The following BLAST results are available for this feature:
BLAST of NO04G02830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28722.12.000e-14064.72glycerophosphodiester phosphodiesterase domain-con... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02830NO04G02830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02830.1NO04G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02830.1.cds1NO04G02830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02830.1.cds2NO04G02830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02830.1.cds3NO04G02830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02830.1.cds4NO04G02830.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02830.1 ID=NO04G02830.1|Name=NO04G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp
AAAACACATAGGCACAGGCAAAACAAAGATGCCACCAACTGACGGTTTCG
CCTCAGAGTCCTTCTCCTGCCCCATGATCATGCTGTTGTGGTCGTGGGTA
ATCTTTTGCTGTACCAGCATGATCCTCCACCATTTCCCATCCCTGCTGCA
CCGCCCGAAGCGGCGTATTCAGAGCAACAGCACAGTTGCTGAGACTAGGC
CGGCGGTGGCGGCTACCATGCCTGCAGAGCGTCATAATCCGGGTGTTACA
CCCGTATCAGATGTAAAGGTGGCGAGTCGCCCGATCGACCCACGCTTTTG
CGTGCAGCACATTGCCCATAGAGGGTGTCGTAAAGAAGGCATACCTGAAA
ATACGCTGACGGCTTTTGCTCACGCCGTTGCCGCCGGGTGCGACGTGATT
GAACTGGATGTGTGGTTGACAATAGATGAGCGGGTGGTCGTCTTTCACGA
CTCAGATTTGGAGCGCATGTGCGGGACACAAGCCGCAGCAGCAGCTGCAG
CGACAGTGGCTGCTAGGAGAGCAGTTTCCGCCAATGCGAAGCAGGAGCAA
GGGCAGAAGGAAAACATAGGCGTATCGGATTTGAATTATGATGAGCTACC
AAAAATCAAATTAAACGGTGAGCATTGGGCGGTAAATGACAAGAACCGGA
AGCACGCCTGCAGGATCCCTCTCTTTTCCGAAGTCCTCGAACTCATCCCA
CTTGACAAGCCTATGATCGTCGAGGTTAAGCAGCGGGACCCGATTCTCAT
CCGGAAGGTGCACGACATGATCCTCAACAAGGGTCGGCGTGATCAGACAA
TTTGGTTTAGTCTTGCAGAAGATATCAATGCAGACCTCCGCGCCTATGAC
CCCACCATCCCAAATATTACCTCCGTCTTGGGCATGCTTAAGTGCATTTT
GCTCTATTACACGGGCCTCCTGCCTTTCGTTCGCCTGGATTCAGACATTC
TCGGCATTCCCGTTGATCACGTTGACTATGCCCGTGTCCGAGAGCAAAAA
GCTCTTAAAGCCCTCCCTGATGCGCTGTGCTGGGTCTTAGCTTTTGTCCT
AGGCGGAAAGCCGCCATTGGCGCTCATCCCCCCCGGACTTTTCAAGCATT
TGCGGGCGCGGGGAATCCCAATTTTTTTCTTAGGAGTCAACGATGAGGAG
AACCTGAAGGTGGCTGAGTGGGCAGGATCGACCGCTGTGCTGACCGACAG
GCCCCAATGGCTAAGAAAATGCATGGCGGATGGTAAAGTGGCTTTGAAGC
GACTCTGAGTGTGGATTGGAGTGTGTGTATATGCTGTACCTGTACCTTAA
CGTGTGCAATAGGGGAAGGGAAAGAGCTACAAGATGCGAGACAATAAAAG
ACTGAATTGAAATCATGGCGTAAGTATACTCGCTTCTTTCCTTTGTGTTG
GG
back to top

protein sequence of NO04G02830.1

>NO04G02830.1-protein ID=NO04G02830.1-protein|Name=NO04G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MPPTDGFASESFSCPMIMLLWSWVIFCCTSMILHHFPSLLHRPKRRIQSN
STVAETRPAVAATMPAERHNPGVTPVSDVKVASRPIDPRFCVQHIAHRGC
RKEGIPENTLTAFAHAVAAGCDVIELDVWLTIDERVVVFHDSDLERMCGT
QAAAAAAATVAARRAVSANAKQEQGQKENIGVSDLNYDELPKIKLNGEHW
AVNDKNRKHACRIPLFSEVLELIPLDKPMIVEVKQRDPILIRKVHDMILN
KGRRDQTIWFSLAEDINADLRAYDPTIPNITSVLGMLKCILLYYTGLLPF
VRLDSDILGIPVDHVDYARVREQKALKALPDALCWVLAFVLGGKPPLALI
PPGLFKHLRARGIPIFFLGVNDEENLKVAEWAGSTAVLTDRPQWLRKCMA
DGKVALKRL*
back to top

mRNA from alignment at chr4:747494..749310-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02830.1 ID=NO04G02830.1|Name=NO04G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp|location=Sequence derived from alignment at chr4:747494..749310- (Nannochloropsis oceanica)
AAAACACATAGGCACAGGCAAAACAAAGATGCCACCAACTGACGGTTTCG
CCTCAGAGTCCTTCTCCTGCCCCATGATCATGCTGTTGTGGTCGTGGGTA
ATCTTTTGCTGTACCAGCATGATCCTCCACCATTTCCCATCCCTGCTGCA
CCGCCCGAAGCGGCGTATTCAGAGCAACAGCACAGTTGCTGAGACTAGGC
CGGCGGTGGCGGCTACCATGCCTGCAGAGCGTCATAATCCGGGTGTTACA
CCCGTATCAGATGTAAAGGTGGCGAGTCGCCCGATCGACCCACGCTTTTG
CGTGCAGCACATTGCCCATAGAGGGTGTCGTAAAGAAGGCATACCTGAAA
ATACGCTGACGGCTTTTGCTCACGCCGTTGCCGCCGGGTGCGACGTGATT
GAACTGGATGTGTGGTTGACAATAGATGAGCGGGTGGTCGTCTTTCACGA
CTCAGATTTGGAGCGCATGTGCGGGACACAAGCCGCAGCAGCAGCTGCAG
CGACAGTGGCTGCTAGGAGAGCAGTTTCCGCCAATGCGAAGCAGGAGCAA
GGGCAGAAGGAAAACATAGGCGTATCGGATTTGAATTATGATGAGCTACC
AAAAATCAAATTAAACGGTGAGCATTGGGCGGTAAATGACAAGAACCGGA
AGCACGCCTGCAGGATCCCTCTCTTTTCCGAAGTCCTCGAACTCATCCCA
CTTGACAAGCCTATGATCGTCGAGGTTAAGCAGCGGGACCCGGTGAGTAA
AAGATAGGATAGAGAAATCGTATGTATGGGCTTATAAAACGACATTGCAC
TACGGAGGGCATGGAATGCTCCTTTCAATCTGTTACTCCCATTCATCTTC
TCTTCTCGTTCATTAGATTCTCATCCGGAAGGTGCACGACATGATCCTCA
ACAAGGGTCGGCGTGATCAGACAATTTGGTTTAGTCTTGCAGAAGATATC
AATGCAGACCTCCGCGCCTATGACCCCACCATCCCAAATATTACCTCCGT
CTTGGGCATGCTTAAGGTAAATAGATCAGCCTGTGTGTGCATCTCCCTGT
CCCCACTTCTTTCCTCCTTGTCGCCCGTGTGGCGTCAACTTTTTCTGAGG
AATAAAAGCGCTCACTCACTCCTCTTATTTACATTCAACCACAAAATGTT
CAGTGCATTTTGCTCTATTACACGGGCCTCCTGCCTTTCGTTCGCCTGGA
TTCAGACATTCTCGGCATTCCCGTTGATCACGTTGACTATGCCCGTGTCC
GAGAGCAAAAAGCTCTTAAAGCCCTCCCTGATGCGCTGTGCTGGGTCTTA
GCTTTTGTCCTAGGCGGAAAGCCGCCATTGGCGCTCATCCCCCCCGGACT
TTTCAAGCATTTGCGGGCGCGGGGAATCCCAATTTTTTTCTTAGGAGTCA
ACGATGAGGAGAACCTGAAGGTAAGAGAAGCGGGAGGCGGGATATCGCGG
AAATCAGTTGTACCTATTCTTTCCGTTGAGAAGTCATTAAAAACAGCTTC
CCTTGTATGCCGTGTGCAGATTGTGACTGACTTTTCTCCTATCGCGCGTT
GTCACTTTTGCCCCCCTCGTACAGGTGGCTGAGTGGGCAGGATCGACCGC
TGTGCTGACCGACAGGCCCCAATGGCTAAGAAAATGCATGGCGGATGGTA
AAGTGGCTTTGAAGCGACTCTGAGTGTGGATTGGAGTGTGTGTATATGCT
GTACCTGTACCTTAACGTGTGCAATAGGGGAAGGGAAAGAGCTACAAGAT
GCGAGACAATAAAAGACTGAATTGAAATCATGGCGTAAGTATACTCGCTT
CTTTCCTTTGTGTTGGG
back to top

Coding sequence (CDS) from alignment at chr4:747494..749310-

>NO04G02830.1 ID=NO04G02830.1|Name=NO04G02830.1|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at chr4:747494..749310- (Nannochloropsis oceanica)
ATGCCACCAACTGACGGTTTCGCCTCAGAGTCCTTCTCCTGCCCCATGAT
CATGCTGTTGTGGTCGTGGGTAATCTTTTGCTGTACCAGCATGATCCTCC
ACCATTTCCCATCCCTGCTGCACCGCCCGAAGCGGCGTATTCAGAGCAAC
AGCACAGTTGCTGAGACTAGGCCGGCGGTGGCGGCTACCATGCCTGCAGA
GCGTCATAATCCGGGTGTTACACCCGTATCAGATGTAAAGGTGGCGAGTC
GCCCGATCGACCCACGCTTTTGCGTGCAGCACATTGCCCATAGAGGGTGT
CGTAAAGAAGGCATACCTGAAAATACGCTGACGGCTTTTGCTCACGCCGT
TGCCGCCGGGTGCGACGTGATTGAACTGGATGTGTGGTTGACAATAGATG
AGCGGGTGGTCGTCTTTCACGACTCAGATTTGGAGCGCATGTGCGGGACA
CAAGCCGCAGCAGCAGCTGCAGCGACAGTGGCTGCTAGGAGAGCAGTTTC
CGCCAATGCGAAGCAGGAGCAAGGGCAGAAGGAAAACATAGGCGTATCGG
ATTTGAATTATGATGAGCTACCAAAAATCAAATTAAACGGTGAGCATTGG
GCGGTAAATGACAAGAACCGGAAGCACGCCTGCAGGATCCCTCTCTTTTC
CGAAGTCCTCGAACTCATCCCACTTGACAAGCCTATGATCGTCGAGGTTA
AGCAGCGGGACCCGATTCTCATCCGGAAGGTGCACGACATGATCCTCAAC
AAGGGTCGGCGTGATCAGACAATTTGGTTTAGTCTTGCAGAAGATATCAA
TGCAGACCTCCGCGCCTATGACCCCACCATCCCAAATATTACCTCCGTCT
TGGGCATGCTTAAGTGCATTTTGCTCTATTACACGGGCCTCCTGCCTTTC
GTTCGCCTGGATTCAGACATTCTCGGCATTCCCGTTGATCACGTTGACTA
TGCCCGTGTCCGAGAGCAAAAAGCTCTTAAAGCCCTCCCTGATGCGCTGT
GCTGGGTCTTAGCTTTTGTCCTAGGCGGAAAGCCGCCATTGGCGCTCATC
CCCCCCGGACTTTTCAAGCATTTGCGGGCGCGGGGAATCCCAATTTTTTT
CTTAGGAGTCAACGATGAGGAGAACCTGAAGGTGGCTGAGTGGGCAGGAT
CGACCGCTGTGCTGACCGACAGGCCCCAATGGCTAAGAAAATGCATGGCG
GATGGTAAAGTGGCTTTGAAGCGACTCTGA
back to top
Synonyms
Publications