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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:700581..703148 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02630.1 vs.
Match: EWM28646.1 (fg-gap repeat domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1025.0 bits (2649), Expect = 1.000e-295 Identity = 512/674 (75.96%), Postives = 581/674 (86.20%), Query Frame = 0
Query: 1 MDLPEYNSSPRNSILSPGLTHRASKTPRSSGLGEETTSHFQFNEIAFGHQPSIPEEESGGQYNNNKENKIKTPFQHLRQSPRLVAISPLKRLLLGASVSAVLLGILFVAGFFDNRSQSSGGTP--RRSEGGMRPASASLRGTVGDIGPAAGPAAAASLASTLTSGMLFPRNNDVDHHKPRVLMIHSLKPFERRNAHHFRHHDPDNKLTGGLAFSPPAVGSRQKKVQESQEEDTAEYVDEVDHNEDLERRAVSPPAEDVLKIDQALNKLALVLPSPFKTTGVVSHFHSITGVDKYHHFDVNDYFGSSVTNMGSDAKTGLTTLAVGAPGALENSGMVYFLNLRKDGSVDGYSYLTNADDTLGERWTSNVALGWTVENIGDLDGDGIDDLAVGAIGHPFGSSQGAIYILFLTEDKRIKGHTFITTGEAGFEPVLKENSCFGSSIARLGDLDGDGVTELAVGAMGLGKQRGGVYILYLNKDGTVKKTTQISSLYGWDRKLNVEDQFGHSVHSIGDLDGDGVPELAVGGDGFPSGEFYGSVWILFLTKEGGVKKWRRLDELDAMLEPESLFGGSIASLGDLDGDGFPELIVGAPGANEFKGDAYIISLNADATVKTFKSVVDEVGVLSDSIKEEDEFAWSLCNVGDINGDGVPDLAIGAEASPTDKNYGSLHVVFLTPR 673
MD P YN+SPR SILSPGLTHRASKTPRSSGL +ETTSHFQFNE Q SI +EE +Y +KE+K+K+PF LR SPRLVA +P KR LLGASVS VL+GILFV GFFDNR+ SS T R G+RPAS LRGTVGD+GPAAGPAAAASLASTLT G+LFPR+ DVDHHKPRV+MI SLK F RRN HH+ HDP+ +L+GG + P GSR+KK +ES+EEDTA +V++VD ++D +RR+ SP AED+L I+ A +KLA+VLP ++TTGVVSHFHSITGVD H+FDVNDYFGSSVT++G TGLTTLAVGAPGALENSGM+YFL+L KDG V Y+YLTN D +LG+ WTSNVALGWTVENIGDLDGDG+DDLAVGAIG+P GSSQGA+YILF+T ++ IK H FITTGEAGFEP LKENSCFGSSIAR+GDLDGDGVTELAVGAMGLGKQRGG+YILY+NKDGTVKK+TQISSLYGWD KLNVEDQFGH+V +IGDLDGDG+ ELAVGGDGFPSGEFYGSVWIL+LTKEGGVK+WRR+DELD LEPESLFGGSI LGDLDGDGFPELIVGAPGAN FKGDA+I+SL A+ATVK +KS+VDEVGVLSDSIKEEDEFAWSLCN+GDINGDGVPDLA+GAE SP DKN+GSLHVVFLTPR
Sbjct: 1 MDQPGYNNSPRGSILSPGLTHRASKTPRSSGLCDETTSHFQFNEFGLDRQSSIRKEEEN-RYITDKEHKMKSPFDTLRHSPRLVAFTPAKRFLLGASVSLVLIGILFVIGFFDNRAMSSPSTSTTHRRSAGVRPAS--LRGTVGDVGPAAGPAAAASLASTLTGGVLFPRSEDVDHHKPRVMMIPSLKSFSRRNVHHYDTHDPNGRLSGGKSAVKPPAGSREKKRRESEEEDTAVHVEDVDIDDDGKRRSASPDAEDILNIEHASDKLAVVLPHEYETTGVVSHFHSITGVDSNHNFDVNDYFGSSVTSLGGTPGTGLTTLAVGAPGALENSGMIYFLDLEKDGKVKNYTYLTNKDSSLGDHWTSNVALGWTVENIGDLDGDGVDDLAVGAIGYPVGSSQGAVYILFMTPERGIKSHQFITTGEAGFEPFLKENSCFGSSIARIGDLDGDGVTELAVGAMGLGKQRGGIYILYMNKDGTVKKSTQISSLYGWDHKLNVEDQFGHAVRAIGDLDGDGITELAVGGDGFPSGEFYGSVWILYLTKEGGVKQWRRIDELDGHLEPESLFGGSIDMLGDLDGDGFPELIVGAPGANGFKGDAFIVSLGANATVKHYKSLVDEVGVLSDSIKEEDEFAWSLCNIGDINGDGVPDLALGAETSPADKNFGSLHVVFLTPR 671
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G02630.1 ID=NO04G02630.1|Name=NO04G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2316bp
CTCCAGCTAGCGAGGGTAGGGAAGCGGAAAGCGGGCTTGCCCTTGGTCGA
GAAGCCAAATTTGCGAGACCCCCCCGCACGGCACGCAAACGCACGCACGC
AATTATGGACCTACCGGAATACAACAGCAGCCCCCGAAACTCCATACTGA
GTCCGGGGCTGACCCACCGTGCCAGCAAGACCCCTAGAAGCTCTGGTCTG
GGCGAGGAGACGACGTCGCACTTCCAATTCAATGAGATTGCCTTTGGTCA
CCAACCCTCAATCCCTGAGGAAGAGTCCGGCGGGCAATACAACAACAACA
AAGAAAACAAGATCAAGACCCCTTTCCAACATCTCCGTCAAAGCCCCCGC
CTCGTCGCCATCTCCCCCTTGAAGCGACTTTTACTGGGGGCCAGCGTCTC
AGCCGTTCTTCTCGGCATCTTATTTGTAGCTGGGTTTTTTGACAATCGCT
CCCAGTCTTCCGGTGGCACCCCTCGTCGTTCCGAAGGAGGTATGCGTCCT
GCCTCCGCCTCTTTGCGAGGCACTGTCGGAGACATTGGCCCTGCTGCCGG
TCCTGCCGCAGCGGCATCCCTGGCTTCAACACTCACTAGTGGGATGCTCT
TTCCTCGTAATAATGACGTAGACCACCATAAGCCGCGTGTGCTGATGATT
CATTCGTTGAAGCCATTTGAACGTCGGAACGCCCACCATTTCAGGCATCA
CGACCCGGACAACAAGCTCACGGGGGGGCTGGCCTTTTCACCCCCTGCCG
TAGGGAGCCGACAGAAGAAAGTGCAGGAGTCCCAGGAGGAGGATACTGCT
GAGTACGTCGACGAGGTGGATCACAACGAAGATTTGGAGCGACGGGCTGT
ATCGCCCCCGGCGGAGGATGTGTTGAAGATTGACCAGGCTTTGAACAAGC
TTGCGTTGGTGTTGCCTTCGCCATTCAAGACGACGGGGGTCGTTTCTCAT
TTTCATTCTATCACAGGCGTGGACAAGTACCACCATTTTGACGTGAATGA
TTATTTTGGGTCGTCTGTAACTAATATGGGGAGCGATGCCAAGACTGGCT
TGACCACGCTCGCGGTGGGTGCACCCGGGGCTCTGGAAAATTCGGGAATG
GTCTACTTCTTGAATCTGCGAAAGGATGGAAGCGTAGATGGTTATAGTTA
TTTGACGAATGCGGATGATACCTTGGGGGAGCGTTGGACGTCAAATGTGG
CTTTGGGATGGACGGTGGAAAATATCGGGGATTTGGATGGGGACGGTATT
GACGACCTGGCCGTTGGTGCGATTGGTCACCCCTTCGGGAGCTCACAAGG
CGCGATCTACATATTGTTTTTGACGGAAGATAAGCGAATTAAGGGGCATA
CATTCATCACAACGGGGGAGGCAGGGTTCGAGCCTGTCCTAAAGGAAAAC
TCGTGCTTTGGCTCGTCGATCGCCCGTCTCGGAGATTTAGACGGAGATGG
CGTTACTGAGCTTGCGGTGGGCGCGATGGGCTTGGGCAAGCAGCGAGGGG
GGGTGTACATTCTCTATTTAAATAAAGATGGGACGGTGAAAAAGACAACG
CAGATTTCGTCATTGTATGGGTGGGACCGTAAACTGAATGTGGAAGATCA
GTTTGGACATTCAGTGCATTCGATTGGCGATTTAGATGGGGATGGGGTCC
CTGAATTGGCGGTGGGTGGTGACGGTTTCCCCTCGGGAGAATTCTATGGC
TCGGTGTGGATCTTGTTCTTGACCAAGGAGGGGGGGGTGAAGAAGTGGAG
GAGGTTGGATGAGCTGGATGCGATGTTAGAGCCTGAGAGCTTGTTTGGGG
GGTCGATTGCTTCGCTTGGGGATCTAGACGGAGATGGATTTCCGGAGTTG
ATTGTTGGGGCACCTGGCGCGAATGAATTTAAGGGGGACGCGTACATTAT
TTCGTTGAATGCAGATGCAACGGTGAAGACTTTTAAGAGCGTGGTGGATG
AGGTTGGGGTGTTGTCGGATAGTATAAAGGAGGAGGATGAGTTTGCCTGG
TCGTTGTGTAACGTTGGGGATATTAATGGGGATGGCGTGCCAGATTTGGC
AATCGGCGCTGAAGCCTCACCAACGGATAAAAACTATGGCTCATTGCACG
TTGTATTTTTGACGCCAAGGTAGAAAGGGGGTGCATAGTAGATGGGAGGG
AAGGGAGAGAGAAAATGACACAAGGAAGTCTCGAGGTGCGGAGAGAAGGA
AAAAAAAGAAGAGAATCTTTTGATAGCGTCTAGGGTCTCTTTTATATTCA
ATTTATATGTACCCTGGCAAAAGTAGTACCAGACAAAAAGCAAAAAGTTG
CCGAAATGTTGAGAAT back to topprotein sequence of NO04G02630.1 >NO04G02630.1-protein ID=NO04G02630.1-protein|Name=NO04G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp
MDLPEYNSSPRNSILSPGLTHRASKTPRSSGLGEETTSHFQFNEIAFGHQ
PSIPEEESGGQYNNNKENKIKTPFQHLRQSPRLVAISPLKRLLLGASVSA
VLLGILFVAGFFDNRSQSSGGTPRRSEGGMRPASASLRGTVGDIGPAAGP
AAAASLASTLTSGMLFPRNNDVDHHKPRVLMIHSLKPFERRNAHHFRHHD
PDNKLTGGLAFSPPAVGSRQKKVQESQEEDTAEYVDEVDHNEDLERRAVS
PPAEDVLKIDQALNKLALVLPSPFKTTGVVSHFHSITGVDKYHHFDVNDY
FGSSVTNMGSDAKTGLTTLAVGAPGALENSGMVYFLNLRKDGSVDGYSYL
TNADDTLGERWTSNVALGWTVENIGDLDGDGIDDLAVGAIGHPFGSSQGA
IYILFLTEDKRIKGHTFITTGEAGFEPVLKENSCFGSSIARLGDLDGDGV
TELAVGAMGLGKQRGGVYILYLNKDGTVKKTTQISSLYGWDRKLNVEDQF
GHSVHSIGDLDGDGVPELAVGGDGFPSGEFYGSVWILFLTKEGGVKKWRR
LDELDAMLEPESLFGGSIASLGDLDGDGFPELIVGAPGANEFKGDAYIIS
LNADATVKTFKSVVDEVGVLSDSIKEEDEFAWSLCNVGDINGDGVPDLAI
GAEASPTDKNYGSLHVVFLTPR* back to topmRNA from alignment at chr4:700581..703148- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G02630.1 ID=NO04G02630.1|Name=NO04G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp|location=Sequence derived from alignment at chr4:700581..703148- (Nannochloropsis oceanica)
CTCCAGCTAGCGAGGGTAGGGAAGCGGAAAGCGGGCTTGCCCTTGGTCGA
GAAGCCAAATTTGCGAGACCCCCCCGCACGGCACGCAAACGCACGCACGC
AATTATGGACCTACCGGAATACAACAGCAGCCCCCGAAACTCCATACTGA
GTCCGGGGCTGACCCACCGTGCCAGCAAGACCCCTAGAAGCTCTGGTCTG
GGCGAGGAGACGACGTCGCACTTCCAATTCAATGAGATTGCCTTTGGTGT
GAGTAGGATAACATCCCATGCCTGTTACATGCCCAGCTTTGTCTAGCACC
TTCATGTGTCAGCGCGTATCAGCACTCCTTCCATCCCTCTTGTTGCGTCC
TTTCTCTATCAACAGGGCTGGAGACATACCTCGTACCCCGGCTCTGCACC
CTATGCATACACTCCTCCTCGCTTTAACGTCACACAGTCAAACCTCTGCT
TCCATTGTCGTCACACCAATTCTTGCATTTTAACTCACACACTTGCACAG
CACCAACCCTCAATCCCTGAGGAAGAGTCCGGCGGGCAATACAACAACAA
CAAAGAAAACAAGATCAAGACCCCTTTCCAACATCTCCGTCAAAGCCCCC
GCCTCGTCGCCATCTCCCCCTTGAAGCGACTTTTACTGGGGGCCAGCGTC
TCAGCCGTTCTTCTCGGCATCTTATTTGTAGCTGGGTTTTTTGACAATCG
CTCCCAGTCTTCCGGTGGCACCCCTCGTCGTTCCGAAGGAGGTATGCGTC
CTGCCTCCGCCTCTTTGCGAGGCACTGTCGGAGACATTGGCCCTGCTGCC
GGTCCTGCCGCAGCGGCATCCCTGGCTTCAACACTCACTAGTGGGATGCT
CTTTCCTCGTAATAATGACGTAGACCACCATAAGCCGCGTGTGCTGATGA
TTCATTCGTTGAAGCCATTTGAACGTCGGAACGCCCACCATTTCAGGCAT
CACGACCCGGACAACAAGCTCACGGGGGGGCTGGCCTTTTCACCCCCTGC
CGTAGGGAGCCGACAGAAGAAAGTGCAGGAGTCCCAGGAGGAGGATACTG
CTGAGTACGTCGACGAGGTGGATCACAACGAAGATTTGGAGCGACGGGCT
GTATCGCCCCCGGCGGAGGATGTGTTGAAGATTGACCAGGCTTTGAACAA
GCTTGCGTTGGTGTTGCCTTCGCCATTCAAGACGACGGGGGTCGTTTCTC
ATTTTCATTCTATCACAGGCGTGGACAAGTACCACCATTTTGACGTGAAT
GATTATTTTGGGTCGTCTGTAACTAATATGGGGAGCGATGCCAAGACTGG
CTTGACCACGCTCGCGGTGGGTGCACCCGGGGCTCTGGAAAATTCGGGAA
TGGTCTACTTCTTGAATCTGCGAAAGGATGGAAGCGTAGATGGTTATAGT
TATTTGACGAATGCGGATGATACCTTGGGGGAGCGTTGGACGTCAAATGT
GGCTTTGGGATGGACGGTGGAAAATATCGGGGATTTGGATGGGGACGGTA
TTGACGACCTGGCCGTTGGTGCGATTGGTCACCCCTTCGGGAGCTCACAA
GGCGCGATCTACATATTGTTTTTGACGGAAGATAAGCGAATTAAGGGGCA
TACATTCATCACAACGGGGGAGGCAGGGTTCGAGCCTGTCCTAAAGGAAA
ACTCGTGCTTTGGCTCGTCGATCGCCCGTCTCGGAGATTTAGACGGAGAT
GGCGTTACTGAGCTTGCGGTGGGCGCGATGGGCTTGGGCAAGCAGCGAGG
GGGGGTGTACATTCTCTATTTAAATAAAGATGGGACGGTGAAAAAGACAA
CGCAGATTTCGTCATTGTATGGGTGGGACCGTAAACTGAATGTGGAAGAT
CAGTTTGGACATTCAGTGCATTCGATTGGCGATTTAGATGGGGATGGGGT
CCCTGAATTGGCGGTGGGTGGTGACGGTTTCCCCTCGGGAGAATTCTATG
GCTCGGTGTGGATCTTGTTCTTGACCAAGGAGGGGGGGGTGAAGAAGTGG
AGGAGGTTGGATGAGCTGGATGCGATGTTAGAGCCTGAGAGCTTGTTTGG
GGGGTCGATTGCTTCGCTTGGGGATCTAGACGGAGATGGATTTCCGGAGT
TGATTGTTGGGGCACCTGGCGCGAATGAATTTAAGGGGGACGCGTACATT
ATTTCGTTGAATGCAGATGCAACGGTGAAGACTTTTAAGAGCGTGGTGGA
TGAGGTTGGGGTGTTGTCGGATAGTATAAAGGAGGAGGATGAGTTTGCCT
GGTCGTTGTGTAACGTTGGGGATATTAATGGGGATGGCGTGCCAGATTTG
GCAATCGGCGCTGAAGCCTCACCAACGGATAAAAACTATGGCTCATTGCA
CGTTGTATTTTTGACGCCAAGGTAGAAAGGGGGTGCATAGTAGATGGGAG
GGAAGGGAGAGAGAAAATGACACAAGGAAGTCTCGAGGTGCGGAGAGAAG
GAAAAAAAAGAAGAGAATCTTTTGATAGCGTCTAGGGTCTCTTTTATATT
CAATTTATATGTACCCTGGCAAAAGTAGTACCAGACAAAAAGCAAAAAGT
TGCCGAAATGTTGAGAAT back to topCoding sequence (CDS) from alignment at chr4:700581..703148- >NO04G02630.1 ID=NO04G02630.1|Name=NO04G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=2019bp|location=Sequence derived from alignment at chr4:700581..703148- (Nannochloropsis oceanica)
ATGGACCTACCGGAATACAACAGCAGCCCCCGAAACTCCATACTGAGTCC
GGGGCTGACCCACCGTGCCAGCAAGACCCCTAGAAGCTCTGGTCTGGGCG
AGGAGACGACGTCGCACTTCCAATTCAATGAGATTGCCTTTGGTCACCAA
CCCTCAATCCCTGAGGAAGAGTCCGGCGGGCAATACAACAACAACAAAGA
AAACAAGATCAAGACCCCTTTCCAACATCTCCGTCAAAGCCCCCGCCTCG
TCGCCATCTCCCCCTTGAAGCGACTTTTACTGGGGGCCAGCGTCTCAGCC
GTTCTTCTCGGCATCTTATTTGTAGCTGGGTTTTTTGACAATCGCTCCCA
GTCTTCCGGTGGCACCCCTCGTCGTTCCGAAGGAGGTATGCGTCCTGCCT
CCGCCTCTTTGCGAGGCACTGTCGGAGACATTGGCCCTGCTGCCGGTCCT
GCCGCAGCGGCATCCCTGGCTTCAACACTCACTAGTGGGATGCTCTTTCC
TCGTAATAATGACGTAGACCACCATAAGCCGCGTGTGCTGATGATTCATT
CGTTGAAGCCATTTGAACGTCGGAACGCCCACCATTTCAGGCATCACGAC
CCGGACAACAAGCTCACGGGGGGGCTGGCCTTTTCACCCCCTGCCGTAGG
GAGCCGACAGAAGAAAGTGCAGGAGTCCCAGGAGGAGGATACTGCTGAGT
ACGTCGACGAGGTGGATCACAACGAAGATTTGGAGCGACGGGCTGTATCG
CCCCCGGCGGAGGATGTGTTGAAGATTGACCAGGCTTTGAACAAGCTTGC
GTTGGTGTTGCCTTCGCCATTCAAGACGACGGGGGTCGTTTCTCATTTTC
ATTCTATCACAGGCGTGGACAAGTACCACCATTTTGACGTGAATGATTAT
TTTGGGTCGTCTGTAACTAATATGGGGAGCGATGCCAAGACTGGCTTGAC
CACGCTCGCGGTGGGTGCACCCGGGGCTCTGGAAAATTCGGGAATGGTCT
ACTTCTTGAATCTGCGAAAGGATGGAAGCGTAGATGGTTATAGTTATTTG
ACGAATGCGGATGATACCTTGGGGGAGCGTTGGACGTCAAATGTGGCTTT
GGGATGGACGGTGGAAAATATCGGGGATTTGGATGGGGACGGTATTGACG
ACCTGGCCGTTGGTGCGATTGGTCACCCCTTCGGGAGCTCACAAGGCGCG
ATCTACATATTGTTTTTGACGGAAGATAAGCGAATTAAGGGGCATACATT
CATCACAACGGGGGAGGCAGGGTTCGAGCCTGTCCTAAAGGAAAACTCGT
GCTTTGGCTCGTCGATCGCCCGTCTCGGAGATTTAGACGGAGATGGCGTT
ACTGAGCTTGCGGTGGGCGCGATGGGCTTGGGCAAGCAGCGAGGGGGGGT
GTACATTCTCTATTTAAATAAAGATGGGACGGTGAAAAAGACAACGCAGA
TTTCGTCATTGTATGGGTGGGACCGTAAACTGAATGTGGAAGATCAGTTT
GGACATTCAGTGCATTCGATTGGCGATTTAGATGGGGATGGGGTCCCTGA
ATTGGCGGTGGGTGGTGACGGTTTCCCCTCGGGAGAATTCTATGGCTCGG
TGTGGATCTTGTTCTTGACCAAGGAGGGGGGGGTGAAGAAGTGGAGGAGG
TTGGATGAGCTGGATGCGATGTTAGAGCCTGAGAGCTTGTTTGGGGGGTC
GATTGCTTCGCTTGGGGATCTAGACGGAGATGGATTTCCGGAGTTGATTG
TTGGGGCACCTGGCGCGAATGAATTTAAGGGGGACGCGTACATTATTTCG
TTGAATGCAGATGCAACGGTGAAGACTTTTAAGAGCGTGGTGGATGAGGT
TGGGGTGTTGTCGGATAGTATAAAGGAGGAGGATGAGTTTGCCTGGTCGT
TGTGTAACGTTGGGGATATTAATGGGGATGGCGTGCCAGATTTGGCAATC
GGCGCTGAAGCCTCACCAACGGATAAAAACTATGGCTCATTGCACGTTGT
ATTTTTGACGCCAAGGTAG back to top
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