|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr4 | genome | chr4:620127..622695 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02160.1 vs.
Match: EWM28568.1 (delta( )-delta( )-dienoyl- mitochondrial-like protein [Nannochloropsis gaditana]) HSP 1 Score: 446.8 bits (1148), Expect = 1.100e-121 Identity = 234/324 (72.22%), Postives = 263/324 (81.17%), Query Frame = 0
Query: 285 MLSRVLALARCPAAATGFLTTRLALCPHPIIRAASSATTAMRYETLAIDKGKADAPGVVFIKMNRPQKRNAMNSKFWGECKAAFEALGEDGDVRAIVLMGEGKVFTSGLDLSDIGIDLMGGGGDG-----VDVARQALKIKKHVTRMQDAFNAIEKIPQPVIAAIHGACIGGGVDLIAACDIRLASAETVFSIKEVDIGLAADLGTLQRLPRITGNESLLRELAFTGRNFNCTEGQLLGLFSRVLPSPTETIAAATALAVEIANKSPVAVTGTKVNLLYSRDHASVQDGLNHMTTWNMSALQSEDIGRAVQGAITKEVPTYSKL 604
ML R+ L P A L + P AS+A M +ETL I+ ++DAPGV F+ +NRP+KRNAMNSKFWGECK F+ LGE+G+VRA+VL G GKVFTSGLDLSDIGIDLMGG G G VDVARQA KIK+HVTRMQ+AFNAIE+IPQPV+AAIHGACIGGG+DLIAACDIR A AET+FSIKEVDIGLAADLGTLQRLPR+TGNESLLRELAFTGRNF+ EGQ LGL S VLPSP ET+A AT LA+EIA KSPVAV GTK NLLYSRDH SVQDGLN+MTTWNM+ALQSEDIG+AVQGA+ KE PT+SKL
Sbjct: 1 MLLRLSNLGHRPVLA---LQRHIGTYPAKFTTGASTARREMHFETLTIETNRSDAPGVAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDH-SVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKERPTFSKL 320
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G02160.1 ID=NO04G02160.1|Name=NO04G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp
ATGGCTGTCGTCGCAACCACCGCCACAACCACCCTCCTCCTCCTTGGCCG
CGCCTCCGCCACCACAGCATCCGTCCTGCGTCCCCGGCGCCCGAGTCTGC
TACCTGCATTCCTCCCTCCCTTCCCCCTCACAACCACAGCCATCCGTGGT
GTTCGTTCTCGCCCTGGTCCTGCGCTTGGCGGCAGCCTAGCCAATTCCAT
TCGGCTAGCATGGGTCAAGGTTCTTGGCTCGGCGCTAGCGGAGGAAGTCG
ACCCCGGCGAGGTGGAAGGAACGGATCTACGTGTGCTCAAGTACCCCGAC
CCCCGTCTTCGAGCCTCCAACGCAGAAATCACAGACTTTGGCCCGGAAGT
GGCGGCCTTGGCAAAGGATATGTTTAAAGTGATGTACGCGATGAACGGGG
TAGGATTGGCAGCACCGCAAGTAGGTGTGAATCAACGTCTGATGGTTTTT
AACCCCATGGGGGATAAAGTGAAGTGGCTGAACGAGGTGGTGTTGTGCAA
CCCTGTGATTGTTGAGAGGTCGGGCAAGACGGAAGTTGCAGAGGAGGGGT
GTTTGTCGTTTCCGGGTATGGCTGGCGATGTTGAGCGCTCGCTCGTTATT
AAGGTGACATTCCAAAACGCCAAGGGAAAGACTGTCACCAAGAAATTTCG
TGATTGGGAGGCGCGCATTTTCCAGCATGAGTACGACCATTTGGACGGCG
TAGTGTATATTGATAGGCTCTTGCCAGAGTCGAAGGAGAAGGTGCAGCCG
GTGTTAGACAAGTTGGTTGCTGACTTTGGCCCGGGCGGAGCTTTGCCAGA
GCAACAACCTCTTCGCAGCTGTAAGACCACGCCCGCCAGCTGCTTGTTCT
TTATGCTGTCTCGTGTTTTGGCCCTGGCCCGTTGTCCTGCTGCCGCTACC
GGCTTTTTGACGACCCGTCTCGCCCTCTGTCCTCACCCTATCATCCGCGC
TGCTTCCTCTGCTACCACAGCTATGAGGTACGAGACACTGGCGATCGATA
AAGGAAAGGCCGATGCCCCAGGCGTTGTTTTTATCAAAATGAATCGCCCT
CAAAAGCGCAATGCGATGAACAGCAAGTTCTGGGGCGAATGCAAAGCCGC
TTTCGAGGCGCTAGGGGAGGATGGAGACGTGCGTGCTATTGTGCTTATGG
GGGAAGGGAAGGTTTTTACCTCTGGCTTGGATTTGTCAGATATCGGTATC
GATTTGATGGGAGGGGGTGGGGATGGGGTGGACGTGGCGCGGCAGGCTTT
GAAGATTAAGAAGCATGTGACGCGGATGCAAGACGCTTTCAACGCTATTG
AGAAAATTCCCCAGCCAGTCATTGCTGCCATCCATGGGGCATGCATCGGG
GGGGGGGTCGACCTGATCGCGGCGTGTGACATTCGTTTGGCGTCGGCCGA
GACAGTTTTCAGTATCAAGGAGGTGGACATTGGTTTGGCTGCTGACCTTG
GCACGTTGCAGCGACTCCCACGCATAACGGGGAATGAGAGTCTACTCCGC
GAGCTTGCTTTCACTGGCCGAAACTTCAATTGTACCGAAGGCCAGCTTCT
CGGATTGTTCAGCCGTGTCTTACCTTCCCCTACCGAGACAATTGCAGCTG
CTACGGCTTTGGCGGTCGAGATAGCGAATAAGAGTCCCGTGGCAGTGACG
GGGACGAAAGTGAATCTGCTTTATTCGCGGGACCACGCGTCGGTGCAGGA
CGGGTTGAATCATATGACGACGTGGAATATGAGTGCTTTACAGAGTGAGG
ATATTGGAAGGGCTGTCCAGGGGGCGATCACAAAGGAGGTGCCGACTTAT
TCGAAGCTGTAG back to topprotein sequence of NO04G02160.1 >NO04G02160.1-protein ID=NO04G02160.1-protein|Name=NO04G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MAVVATTATTTLLLLGRASATTASVLRPRRPSLLPAFLPPFPLTTTAIRG
VRSRPGPALGGSLANSIRLAWVKVLGSALAEEVDPGEVEGTDLRVLKYPD
PRLRASNAEITDFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVF
NPMGDKVKWLNEVVLCNPVIVERSGKTEVAEEGCLSFPGMAGDVERSLVI
KVTFQNAKGKTVTKKFRDWEARIFQHEYDHLDGVVYIDRLLPESKEKVQP
VLDKLVADFGPGGALPEQQPLRSCKTTPASCLFFMLSRVLALARCPAAAT
GFLTTRLALCPHPIIRAASSATTAMRYETLAIDKGKADAPGVVFIKMNRP
QKRNAMNSKFWGECKAAFEALGEDGDVRAIVLMGEGKVFTSGLDLSDIGI
DLMGGGGDGVDVARQALKIKKHVTRMQDAFNAIEKIPQPVIAAIHGACIG
GGVDLIAACDIRLASAETVFSIKEVDIGLAADLGTLQRLPRITGNESLLR
ELAFTGRNFNCTEGQLLGLFSRVLPSPTETIAAATALAVEIANKSPVAVT
GTKVNLLYSRDHASVQDGLNHMTTWNMSALQSEDIGRAVQGAITKEVPTY
SKL* back to topmRNA from alignment at chr4:620127..622695- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G02160.1 ID=NO04G02160.1|Name=NO04G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2569bp|location=Sequence derived from alignment at chr4:620127..622695- (Nannochloropsis oceanica)
ATGGCTGTCGTCGCAACCACCGCCACAACCACCCTCCTCCTCCTTGGCCG
CGCCTCCGCCACCACAGCATCCGTCCTGCGTCCCCGGCGCCCGAGTCTGC
TACCTGCATTCCTCCCTCCCTTCCCCCTCACAACCACAGCCATCCGTGGT
GTTCGTTCTCGCCCTGGTCCTGCGCTTGGCGGCAGCCTAGCCAATTCCAT
TCGGCTAGCATGGGTCAAGGTTCTTGGCTCGGCGCTAGCGGAGGAAGTCG
ACCCCGGCGAGGTGGAAGGAACGGATCTACGTGTGCTCAAGTACCCCGAC
CCCCGTCTTCGAGCCTCCAACGCAGAAATCACAGACTTTGGCCCGGAAGT
GGCGGCCTTGGCAAAGGATATGTTTAAAGTGATGTACGCGATGAACGGGG
TAGGATTGGCAGCACCGCAAGTAGGTGTGAATCAACGTCTGATGGTTTTT
AACCCCATGGGGGATAAAGTGAAGTGGCTGAACGAGGTGGTGTTGTGCAA
CCCTGTGATTGTTGAGAGGTCGGGCAAGACGGAAGTTGCAGAGGAGGGGT
GTTTGTCGTTTCCGGGTATGGCTGGCGATGTACGTATGCAGAGAGGGATG
AAGGGAGGGAGGGAGGGAGGGAGGAGAGGATAGAGCGAGCAAAGGGACGG
CATGAAGAGGGTAATCAGATTTTGTGCGCGTGCTTATTTTTATGTCTGTC
TTTTTTTGGGCATATTGCAGGTTGAGCGCTCGCTCGTTATTAAGGTGACA
TTCCAAAACGCCAAGGGAAAGACTGTCACCAAGAAATTTCGTGATTGGGA
GGCGCGCATTTTCCAGCATGAGTACGACCATTTGGACGGCGTAGTGTATA
TTGATAGGCTCTTGCCAGAGTCGAAGGAGAAGGTATGTTTGCGAAATGAC
GGACGAGAGGGAGATTAATGTGGTGCGATAGGTGTGTGTTCGTTTCAAGT
ACGAGTGAGAAGGAGCGCCGCCTGACTGAGGCCAGAGTAAAATCTTAAGC
TGGGGAATGGGAACAAAGGGAGCGATAGTGCGGAAAGAGTGATCTGATGA
GCTGACGAGTTAACATTATATCCCCAAAAACAGGTGCAGCCGGTGTTAGA
CAAGTTGGTTGCTGACTTTGGCCCGGGCGGAGCTTTGTGAGGAGGTTTGG
GATGTCTCACAGAAGATGTGTTGCAGTGCGCAGGCATTTTTTTTAGCAGA
CCGAGTCAATCCCGACATGTAATGAACTTCTCAGTGAAAGAAGAGAACGC
AAACGAATGACTAACACCGTGGAGTTACCTGTTGCTATCTTTCCCCTTGC
CCGGTGCAGTAATGGGCCAAGCTCAAGCGAGGCGTGATCATGCCCCACTC
TTTTACTTTGCTTTGCCTGCCCGAAACAAGCATGACTTACCCCACTCTGA
CTAACCAGTGCATGCTGTACTCTCGGAAAAAGTTGTAGCATCGACGACGT
GCGGCCTGCCTCGCTGTTGTTGCAATAGATAGTCTCTTCATCGATATCGT
TCATGAACCCCAGTCCACGCCTCATCGACAACGCCCCTCGTCCAACAACA
GGCCAGAGCAACAACCTCTTCGCAGCTGTAAGACCACGCCCGCCAGCTGC
TTGTTCTTTATGCTGTCTCGTGTTTTGGCCCTGGCCCGTTGTCCTGCTGC
CGCTACCGGCTTTTTGACGACCCGTCTCGCCCTCTGTCCTCACCCTATCA
TCCGCGCTGCTTCCTCTGCTACCACAGCTATGAGGTACGAGACACTGGCG
ATCGATAAAGGAAAGGCCGATGCCCCAGGCGTTGTTTTTATCAAAATGAA
TCGCCCTCAAAAGCGCAATGCGATGAACAGCAAGTTCTGGGGCGAATGCA
AAGCCGCTTTCGAGGCGCTAGGGGAGGATGGAGACGTGCGTGCTATTGTG
CTTATGGGGGAAGGGAAGGTTTTTACCTCTGGCTTGGATTTGTCAGATAT
CGGTATCGATTTGATGGGAGGGGGTGGGGATGGGGTGGACGTGGCGCGGC
AGGCTTTGAAGATTAAGAAGCATGTGACGCGGATGCAAGACGCTTTCAAC
GCTATTGAGAAAATTCCCCAGCCAGTCATTGCTGCCATCCATGGGGCATG
CATCGGGGGGGGGGTCGACCTGATCGCGGCGTGTGACATTCGTTTGGCGT
CGGCCGAGACAGTTTTCAGTATCAAGGAGGTGGACATTGGTTTGGCTGCT
GACCTTGGCACGTTGCAGCGACTCCCACGCATAACGGGGAATGAGAGTCT
ACTCCGCGAGCTTGCTTTCACTGGCCGAAACTTCAATTGTACCGAAGGCC
AGCTTCTCGGATTGTTCAGCCGTGTCTTACCTTCCCCTACCGAGACAATT
GCAGCTGCTACGGCTTTGGCGGTCGAGATAGCGAATAAGAGTCCCGTGGC
AGTGACGGGGACGAAAGTGAATCTGCTTTATTCGCGGGACCACGCGTCGG
TGCAGGACGGGTTGAATCATATGACGACGTGGAATATGAGTGCTTTACAG
AGTGAGGATATTGGAAGGGCTGTCCAGGGGGCGATCACAAAGGAGGTGCC
GACTTATTCGAAGCTGTAG back to topCoding sequence (CDS) from alignment at chr4:620127..622695- >NO04G02160.1 ID=NO04G02160.1|Name=NO04G02160.1|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at chr4:620127..622695- (Nannochloropsis oceanica)
ATGGCTGTCGTCGCAACCACCGCCACAACCACCCTCCTCCTCCTTGGCCG
CGCCTCCGCCACCACAGCATCCGTCCTGCGTCCCCGGCGCCCGAGTCTGC
TACCTGCATTCCTCCCTCCCTTCCCCCTCACAACCACAGCCATCCGTGGT
GTTCGTTCTCGCCCTGGTCCTGCGCTTGGCGGCAGCCTAGCCAATTCCAT
TCGGCTAGCATGGGTCAAGGTTCTTGGCTCGGCGCTAGCGGAGGAAGTCG
ACCCCGGCGAGGTGGAAGGAACGGATCTACGTGTGCTCAAGTACCCCGAC
CCCCGTCTTCGAGCCTCCAACGCAGAAATCACAGACTTTGGCCCGGAAGT
GGCGGCCTTGGCAAAGGATATGTTTAAAGTGATGTACGCGATGAACGGGG
TAGGATTGGCAGCACCGCAAGTAGGTGTGAATCAACGTCTGATGGTTTTT
AACCCCATGGGGGATAAAGTGAAGTGGCTGAACGAGGTGGTGTTGTGCAA
CCCTGTGATTGTTGAGAGGTCGGGCAAGACGGAAGTTGCAGAGGAGGGGT
GTTTGTCGTTTCCGGGTATGGCTGGCGATGTTGAGCGCTCGCTCGTTATT
AAGGTGACATTCCAAAACGCCAAGGGAAAGACTGTCACCAAGAAATTTCG
TGATTGGGAGGCGCGCATTTTCCAGCATGAGTACGACCATTTGGACGGCG
TAGTGTATATTGATAGGCTCTTGCCAGAGTCGAAGGAGAAGGTGCAGCCG
GTGTTAGACAAGTTGGTTGCTGACTTTGGCCCGGGCGGAGCTTTGCCAGA
GCAACAACCTCTTCGCAGCTGTAAGACCACGCCCGCCAGCTGCTTGTTCT
TTATGCTGTCTCGTGTTTTGGCCCTGGCCCGTTGTCCTGCTGCCGCTACC
GGCTTTTTGACGACCCGTCTCGCCCTCTGTCCTCACCCTATCATCCGCGC
TGCTTCCTCTGCTACCACAGCTATGAGGTACGAGACACTGGCGATCGATA
AAGGAAAGGCCGATGCCCCAGGCGTTGTTTTTATCAAAATGAATCGCCCT
CAAAAGCGCAATGCGATGAACAGCAAGTTCTGGGGCGAATGCAAAGCCGC
TTTCGAGGCGCTAGGGGAGGATGGAGACGTGCGTGCTATTGTGCTTATGG
GGGAAGGGAAGGTTTTTACCTCTGGCTTGGATTTGTCAGATATCGGTATC
GATTTGATGGGAGGGGGTGGGGATGGGGTGGACGTGGCGCGGCAGGCTTT
GAAGATTAAGAAGCATGTGACGCGGATGCAAGACGCTTTCAACGCTATTG
AGAAAATTCCCCAGCCAGTCATTGCTGCCATCCATGGGGCATGCATCGGG
GGGGGGGTCGACCTGATCGCGGCGTGTGACATTCGTTTGGCGTCGGCCGA
GACAGTTTTCAGTATCAAGGAGGTGGACATTGGTTTGGCTGCTGACCTTG
GCACGTTGCAGCGACTCCCACGCATAACGGGGAATGAGAGTCTACTCCGC
GAGCTTGCTTTCACTGGCCGAAACTTCAATTGTACCGAAGGCCAGCTTCT
CGGATTGTTCAGCCGTGTCTTACCTTCCCCTACCGAGACAATTGCAGCTG
CTACGGCTTTGGCGGTCGAGATAGCGAATAAGAGTCCCGTGGCAGTGACG
GGGACGAAAGTGAATCTGCTTTATTCGCGGGACCACGCGTCGGTGCAGGA
CGGGTTGAATCATATGACGACGTGGAATATGAGTGCTTTACAGAGTGAGG
ATATTGGAAGGGCTGTCCAGGGGGCGATCACAAAGGAGGTGCCGACTTAT
TCGAAGCTGTAG back to top
|