NO04G01050.1, NO04G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01050.1
Unique NameNO04G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1392
Alignment locationchr4:336737..338128 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:336737..338128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01050.1 vs.
Match: EWM28513.1 (queuine trna-ribosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 790.0 bits (2039), Expect = 3.900e-225
Identity = 385/455 (84.62%), Postives = 409/455 (89.89%), Query Frame = 0 
Query:    9 PLLAVRRPIAAQSSLPLASASACCCTTTSTTTTPHPPDQPPLALPKKKEKKRKVKFDPMTLPPSAEIFPSYERKDFFRFELLHQSKKEGSRARVGRLHTPHGIVNTPGFVAVATNGALKAVDHDWGNEAGQELTFCNTYHLLLQPGPDVIKACGGLHKFINRNRPIITDSGGFQVFSLAHGSVFDELNMKSRGNKHKSEASSVLKITEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDPDALLRCVLRSHRWEARSLNEHLKDVKQQAMYAVIHGGVDPALRKASCEYLTSLPFDGFAVGGALGKDREELVEVLKVTMPHLPVEKPNHLLGIADEPSIWAGSALGVDTFDSCFPTRIARHGTLLTKEGPVYIRKQVHKEDLRPLEEGCECFTCRRHSRAYLHHLYRACEPLSATLLTIHNMQYMNGLMARIRGKIMNNEL 464
            P +A R P+        A    C      TT TP   +Q PL LPKK  KKRKVK DPMT PP+ + FP YERKDFFRFELLH+S KEGSRARVGRLHTPHG VNTPGFVAVATNGALKAVDHDWGN+AGQELTFCNTYHLLLQPGPDVIKACGGLHKF+NRNRPIITDSGGFQVFSLAHGSVFDELNMKSR N+H+SE SSVLKI+EEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHID +ALLRCVLRSHRWEARSL EHLKDV+QQAMYAVIHGGVDP LRKASCEYLT LPFDGFAVGGALGKDR+EL+EVL+VTMPHLPV+KPNHLLGIADEPSIWAG+ALGVDTFDSCFPTRIARHGTLLT++GPVYIRKQVHKEDLRPLEEGCECFTC+RHSRAYLHHLYRA EPLSATLL+IHN+ YMNGLMARIR KI+ NEL
Sbjct:    9 PCVARRYPLRVHRRTVYALKRCC------TTNTPTAFEQTPLVLPKKV-KKRKVKVDPMTPPPAPDSFPVYERKDFFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMKSRSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQGPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
The following BLAST results are available for this feature:
BLAST of NO04G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28513.13.900e-22584.62queuine trna-ribosyltransferase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01050NO04G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01050.1NO04G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01050.1.cds1NO04G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01050.1 ID=NO04G01050.1|Name=NO04G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp
ATGAGGCCTGCTGCTGCATGCGCTCCTCTCCTAGCCGTACGTCGACCTAT
TGCTGCGCAAAGCAGCCTGCCTCTTGCCTCGGCCTCAGCCTGCTGCTGTA
CAACGACTAGCACCACAACCACACCCCATCCCCCTGACCAACCCCCCCTG
GCCCTTCCCAAGAAAAAGGAGAAGAAACGCAAGGTCAAATTCGACCCCAT
GACCCTGCCTCCTTCCGCTGAGATCTTTCCGTCCTACGAGCGCAAGGACT
TCTTCCGCTTTGAGCTGCTGCATCAATCCAAGAAAGAAGGGTCCCGGGCC
CGAGTAGGGAGACTCCATACCCCTCACGGCATCGTCAATACGCCTGGCTT
CGTCGCCGTCGCCACCAACGGCGCGCTCAAAGCTGTCGATCACGACTGGG
GTAATGAGGCAGGACAAGAGCTCACTTTCTGCAACACTTACCACCTCCTC
CTCCAGCCGGGGCCCGATGTAATCAAGGCCTGTGGTGGCCTCCACAAATT
TATCAACCGTAATCGTCCCATCATCACTGACAGCGGCGGCTTTCAAGTCT
TCTCCCTCGCCCATGGTTCAGTTTTTGACGAGCTTAACATGAAATCTCGG
GGCAATAAACACAAGTCTGAGGCCTCGTCCGTCCTCAAAATTACTGAGGA
GGGCTGCCTCTTCCGCTCCTACCGCGACGGCCGGAAAGTCCTCCTCACAC
CGGAATCATCCGTTCAAGCGCAAAAAGCCTACGGATCTGACATCATTATC
CCTCTCGACGAACTACACCCCTATCATATTGACCCCGATGCCTTGCTCCG
GTGCGTCTTACGCTCGCACAGGTGGGAAGCGCGTTCCCTAAACGAACACC
TGAAAGATGTGAAACAACAGGCCATGTATGCCGTCATTCATGGAGGGGTT
GACCCTGCTTTGCGAAAAGCCAGCTGTGAGTATCTCACTTCGTTGCCATT
TGATGGTTTTGCGGTGGGGGGAGCGTTGGGGAAGGACAGGGAGGAGCTGG
TTGAAGTTTTGAAGGTGACGATGCCGCACCTGCCCGTGGAGAAGCCCAAT
CATTTGCTAGGCATTGCAGATGAGCCGTCGATCTGGGCGGGGTCAGCGTT
GGGGGTGGACACATTTGATTCGTGTTTCCCCACGCGGATCGCGAGGCATG
GTACCCTGTTGACGAAGGAGGGACCTGTGTACATTCGAAAGCAGGTGCAC
AAGGAGGACTTGCGGCCGTTGGAGGAGGGATGCGAATGCTTTACCTGCCG
GAGGCACAGCCGAGCATACCTGCATCATTTGTACCGGGCATGCGAGCCGT
TGAGTGCCACATTGTTGACGATTCATAATATGCAGTACATGAATGGGCTG
ATGGCGCGAATACGGGGAAAGATAATGAACAATGAGCTATAG
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protein sequence of NO04G01050.1

>NO04G01050.1-protein ID=NO04G01050.1-protein|Name=NO04G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MRPAAACAPLLAVRRPIAAQSSLPLASASACCCTTTSTTTTPHPPDQPPL
ALPKKKEKKRKVKFDPMTLPPSAEIFPSYERKDFFRFELLHQSKKEGSRA
RVGRLHTPHGIVNTPGFVAVATNGALKAVDHDWGNEAGQELTFCNTYHLL
LQPGPDVIKACGGLHKFINRNRPIITDSGGFQVFSLAHGSVFDELNMKSR
GNKHKSEASSVLKITEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIII
PLDELHPYHIDPDALLRCVLRSHRWEARSLNEHLKDVKQQAMYAVIHGGV
DPALRKASCEYLTSLPFDGFAVGGALGKDREELVEVLKVTMPHLPVEKPN
HLLGIADEPSIWAGSALGVDTFDSCFPTRIARHGTLLTKEGPVYIRKQVH
KEDLRPLEEGCECFTCRRHSRAYLHHLYRACEPLSATLLTIHNMQYMNGL
MARIRGKIMNNEL*
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mRNA from alignment at chr4:336737..338128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01050.1 ID=NO04G01050.1|Name=NO04G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp|location=Sequence derived from alignment at chr4:336737..338128- (Nannochloropsis oceanica)
ATGAGGCCTGCTGCTGCATGCGCTCCTCTCCTAGCCGTACGTCGACCTAT
TGCTGCGCAAAGCAGCCTGCCTCTTGCCTCGGCCTCAGCCTGCTGCTGTA
CAACGACTAGCACCACAACCACACCCCATCCCCCTGACCAACCCCCCCTG
GCCCTTCCCAAGAAAAAGGAGAAGAAACGCAAGGTCAAATTCGACCCCAT
GACCCTGCCTCCTTCCGCTGAGATCTTTCCGTCCTACGAGCGCAAGGACT
TCTTCCGCTTTGAGCTGCTGCATCAATCCAAGAAAGAAGGGTCCCGGGCC
CGAGTAGGGAGACTCCATACCCCTCACGGCATCGTCAATACGCCTGGCTT
CGTCGCCGTCGCCACCAACGGCGCGCTCAAAGCTGTCGATCACGACTGGG
GTAATGAGGCAGGACAAGAGCTCACTTTCTGCAACACTTACCACCTCCTC
CTCCAGCCGGGGCCCGATGTAATCAAGGCCTGTGGTGGCCTCCACAAATT
TATCAACCGTAATCGTCCCATCATCACTGACAGCGGCGGCTTTCAAGTCT
TCTCCCTCGCCCATGGTTCAGTTTTTGACGAGCTTAACATGAAATCTCGG
GGCAATAAACACAAGTCTGAGGCCTCGTCCGTCCTCAAAATTACTGAGGA
GGGCTGCCTCTTCCGCTCCTACCGCGACGGCCGGAAAGTCCTCCTCACAC
CGGAATCATCCGTTCAAGCGCAAAAAGCCTACGGATCTGACATCATTATC
CCTCTCGACGAACTACACCCCTATCATATTGACCCCGATGCCTTGCTCCG
GTGCGTCTTACGCTCGCACAGGTGGGAAGCGCGTTCCCTAAACGAACACC
TGAAAGATGTGAAACAACAGGCCATGTATGCCGTCATTCATGGAGGGGTT
GACCCTGCTTTGCGAAAAGCCAGCTGTGAGTATCTCACTTCGTTGCCATT
TGATGGTTTTGCGGTGGGGGGAGCGTTGGGGAAGGACAGGGAGGAGCTGG
TTGAAGTTTTGAAGGTGACGATGCCGCACCTGCCCGTGGAGAAGCCCAAT
CATTTGCTAGGCATTGCAGATGAGCCGTCGATCTGGGCGGGGTCAGCGTT
GGGGGTGGACACATTTGATTCGTGTTTCCCCACGCGGATCGCGAGGCATG
GTACCCTGTTGACGAAGGAGGGACCTGTGTACATTCGAAAGCAGGTGCAC
AAGGAGGACTTGCGGCCGTTGGAGGAGGGATGCGAATGCTTTACCTGCCG
GAGGCACAGCCGAGCATACCTGCATCATTTGTACCGGGCATGCGAGCCGT
TGAGTGCCACATTGTTGACGATTCATAATATGCAGTACATGAATGGGCTG
ATGGCGCGAATACGGGGAAAGATAATGAACAATGAGCTATAG
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Coding sequence (CDS) from alignment at chr4:336737..338128-

>NO04G01050.1 ID=NO04G01050.1|Name=NO04G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at chr4:336737..338128- (Nannochloropsis oceanica)
ATGAGGCCTGCTGCTGCATGCGCTCCTCTCCTAGCCGTACGTCGACCTAT
TGCTGCGCAAAGCAGCCTGCCTCTTGCCTCGGCCTCAGCCTGCTGCTGTA
CAACGACTAGCACCACAACCACACCCCATCCCCCTGACCAACCCCCCCTG
GCCCTTCCCAAGAAAAAGGAGAAGAAACGCAAGGTCAAATTCGACCCCAT
GACCCTGCCTCCTTCCGCTGAGATCTTTCCGTCCTACGAGCGCAAGGACT
TCTTCCGCTTTGAGCTGCTGCATCAATCCAAGAAAGAAGGGTCCCGGGCC
CGAGTAGGGAGACTCCATACCCCTCACGGCATCGTCAATACGCCTGGCTT
CGTCGCCGTCGCCACCAACGGCGCGCTCAAAGCTGTCGATCACGACTGGG
GTAATGAGGCAGGACAAGAGCTCACTTTCTGCAACACTTACCACCTCCTC
CTCCAGCCGGGGCCCGATGTAATCAAGGCCTGTGGTGGCCTCCACAAATT
TATCAACCGTAATCGTCCCATCATCACTGACAGCGGCGGCTTTCAAGTCT
TCTCCCTCGCCCATGGTTCAGTTTTTGACGAGCTTAACATGAAATCTCGG
GGCAATAAACACAAGTCTGAGGCCTCGTCCGTCCTCAAAATTACTGAGGA
GGGCTGCCTCTTCCGCTCCTACCGCGACGGCCGGAAAGTCCTCCTCACAC
CGGAATCATCCGTTCAAGCGCAAAAAGCCTACGGATCTGACATCATTATC
CCTCTCGACGAACTACACCCCTATCATATTGACCCCGATGCCTTGCTCCG
GTGCGTCTTACGCTCGCACAGGTGGGAAGCGCGTTCCCTAAACGAACACC
TGAAAGATGTGAAACAACAGGCCATGTATGCCGTCATTCATGGAGGGGTT
GACCCTGCTTTGCGAAAAGCCAGCTGTGAGTATCTCACTTCGTTGCCATT
TGATGGTTTTGCGGTGGGGGGAGCGTTGGGGAAGGACAGGGAGGAGCTGG
TTGAAGTTTTGAAGGTGACGATGCCGCACCTGCCCGTGGAGAAGCCCAAT
CATTTGCTAGGCATTGCAGATGAGCCGTCGATCTGGGCGGGGTCAGCGTT
GGGGGTGGACACATTTGATTCGTGTTTCCCCACGCGGATCGCGAGGCATG
GTACCCTGTTGACGAAGGAGGGACCTGTGTACATTCGAAAGCAGGTGCAC
AAGGAGGACTTGCGGCCGTTGGAGGAGGGATGCGAATGCTTTACCTGCCG
GAGGCACAGCCGAGCATACCTGCATCATTTGTACCGGGCATGCGAGCCGT
TGAGTGCCACATTGTTGACGATTCATAATATGCAGTACATGAATGGGCTG
ATGGCGCGAATACGGGGAAAGATAATGAACAATGAGCTATAG
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Synonyms
Publications