NO04G00810.1, NO04G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00810.1
Unique NameNO04G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1298
Alignment locationchr4:273463..275664 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:273463..275664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G00810.1 vs.
Match: XP_005076946.2 (DNA repair protein RAD51 homolog 3 isoform X1 [Mesocricetus auratus])

HSP 1 Score: 194.1 bits (492), Expect = 8.500e-46
Identity = 143/402 (35.57%), Postives = 213/402 (52.99%), Query Frame = 0 
Query:    6 RRPLFTFDLEWPATQGALRRKGFRKAGELREALQKGKGEDHPILTASDLATRAFTPTTSDVDLIRTVLSEADESLNTPPSSSLPLPTSALDLLKAARQPATSTGSKIITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKQQQQQQQQQQAEDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQMTTKVDDAHSTVSSSSSSSSSSLAPTLGESWAPGPAVRLLL-WTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRDVSSSSSSSSSSSSSSRKRPALP 407
            +R L +F L  PA +  L   GF+ A ++ E       ++  I     L T           L R  L++      T  +S      +AL+LL+        T   IITFC A+D +LGGG+   +  E+ G+PG GKTQ+ +QLA+D QIP  F G  G+AVFIDTEG+FM +R   +  A I HL  I  ++  ++ Q+         + G TL+ +L +++  RC +  EL+  +  LP FL +  +V LV+ID IALPFR D     +    + R++N +A+++ +LA    +AV++TNQMTTK+D            + + L P LGESW     +RL+  W  +   R ATL K P Q  ST+ F++T  G RD + ++SSS +SSS+ RKR   P
Sbjct:    2 QRELVSFPLS-PAVRVKLVAAGFQTAEDILEVKPSELSKEVGISKEEALETLQI--------LRRECLTDKPRCAGTSVASK---KYTALELLEQEH-----TQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHMDEEHQKA--------LEGFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSNHSKVQLVIIDGIALPFRHD----LDDLSLRTRLLNGLAQQMISLANDHRLAVILTNQMTTKID-----------KNQALLVPALGESWGHAATIRLIFHW--EQKQRFATLYKSPSQKESTIPFQITPQGFRDAAVTASSSQTSSSNLRKRSREP 361
The following BLAST results are available for this feature:
BLAST of NO04G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005076946.28.500e-4635.57DNA repair protein RAD51 homolog 3 isoform X1 [Mes... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00810NO04G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00810.1NO04G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00810.1.cds1NO04G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00810.1.cds2NO04G00810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00810.1.cds3NO04G00810.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00810.1.cds4NO04G00810.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00810.1.cds5NO04G00810.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00810.1.cds6NO04G00810.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00810.1.cds7NO04G00810.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00810.1.cds8NO04G00810.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00810.1 ID=NO04G00810.1|Name=NO04G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp
ATAACAGCCAAGCCCCGCCCTCCCCTAGTACTCGTGCCGCACAATAGATG
CCACTGGGCAAGCGTCGCCCACTCTTCACTTTTGACCTGGAATGGCCCGC
AACCCAAGGTGCACTTCGTCGTAAGGGCTTTCGCAAAGCAGGCGAGCTTC
GGGAGGCCCTGCAAAAAGGGAAAGGCGAAGATCACCCCATCCTCACTGCC
TCCGATCTCGCCACCCGCGCCTTCACGCCCACCACCTCCGACGTCGACCT
AATCCGCACTGTCCTCTCCGAGGCGGACGAGTCTCTCAATACTCCTCCTT
CCTCCTCCCTCCCCCTCCCCACCTCGGCCCTGGACCTCTTAAAGGCCGCG
CGTCAACCCGCCACCAGCACAGGAAGCAAAATCATAACCTTTTGTAGGGC
TATTGACACCATGCTGGGTGGGGGCGTACAGCGAGGGCAATTGATGGAGA
TTGTGGGCATACCTGGAAGTGGGAAGACACAGGTGGGGATACAGCTCGCG
ATTGACGCGCAGATTCCGCGGTCATTCCGGGGGGCGGGGGGGAAGGCGGT
GTTTATCGATACGGAAGGGGCTTTCATGGCCGAGCGTGCCGCCGAGATGG
GCCAAGCCCTTATCGACCATCTCCAACGCATCCTGGCCTCCAATCAATGC
AAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGGCGGAGGACGTGGCGGG
CTTGACCCTGAAGACGGTGTTGGGCAACGTGTGGGTGCTTCGGTGTTTGA
ATGATGCAGAATTAATGCAGACACTGCAGCACTTGCCTGCGTTCTTGGAT
AGTGAGCCGGAGGTGGTTCTTGTGGTGATAGACAGCATCGCCCTCCCCTT
CCGACAGGATAAGATGTTCCAAACGGAGTCGGCAGTGGCTAAAGCGCGAG
TCGTGAACGTCATGGCCCGCGAATTGAATGCCCTTGCCGAGGCGCGGAAT
GTGGCAGTGGTGGTGACCAATCAAATGACGACCAAGGTCGATGACGCCCA
TTCAACTGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTGCCCCAA
CCCTCGGCGAGTCCTGGGCCCCTGGTCCCGCCGTGCGCCTGCTGCTATGG
ACGAACGACATGGGTCTCCGATGCGCCACCTTGCAGAAGCACCCGGGACA
GGCACATTCCACAGTGGCTTTTCGCGTCACGACTATGGGCATACGTGACG
TTTCCTCTTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCGGAAG
CGGCCTGCGCTGCCCCCTCGCTCTCCACCACCCCGTCAACAACAGTAA
back to top

protein sequence of NO04G00810.1

>NO04G00810.1-protein ID=NO04G00810.1-protein|Name=NO04G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MPLGKRRPLFTFDLEWPATQGALRRKGFRKAGELREALQKGKGEDHPILT
ASDLATRAFTPTTSDVDLIRTVLSEADESLNTPPSSSLPLPTSALDLLKA
ARQPATSTGSKIITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQL
AIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQ
CKQQQQQQQQQQAEDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFL
DSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEAR
NVAVVVTNQMTTKVDDAHSTVSSSSSSSSSSLAPTLGESWAPGPAVRLLL
WTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRDVSSSSSSSSSSSSSSR
KRPALPPRSPPPRQQQ*
back to top

mRNA from alignment at chr4:273463..275664+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00810.1 ID=NO04G00810.1|Name=NO04G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2202bp|location=Sequence derived from alignment at chr4:273463..275664+ (Nannochloropsis oceanica)
ATAACAGCCAAGCCCCGCCCTCCCCTAGTACTCGTGCCGCACAATAGATG
CCACTGGGCAAGCGTCGCCCACTCTTCACTTTTGACCTGGAATGGCCCGC
AACCCAAGGTAGGTCAAGCCCTACCCTCTTATCCCTGCTCCCTTTTTCCT
GGCATAAACCCAACCACCACCCACTACGTAGGTGCACTTCGTCGTAAGGG
CTTTCGCAAAGCAGGCGAGCTTCGGGAGGCCCTGCAAAAAGGGAAAGGCG
AAGATCACCCCATCCTCACTGCCTCCGATCTCGCCACCCGCGGTACGTCC
CCTACTACCCCTCCTCCCTCCGCCCTTCCCGAATACTCCCTCACTTATTC
CCTCCCTCACTGACAGCCTTCACGCCCACCACCTCCGACGTCGACCTAAT
CCGCACTGTCCTCTCCGAGGCGGACGAGTCTCTCAATACTCCTCCTTCCT
CCTCCCTCCCCCTCCCCACCTCGGCCCTGGACCTCTTAAAGGCCGCGCGT
CAACCCGCCACCAGCACAGGAAGCAAAATCATAACCTTTTGTAGGGCTAT
TGACACCATGCTGGGTGGGGGCGTACAGCGAGGGCAATTGATGGAGATTG
TGGGCATACCTGGAAGTGGGAAGACACAGGTGGGGATACAGCTCGCGATT
GACGCGCAGATTCCGCGGTCATTCCGGGGGGCGGGGGGGAAGGCGGTGTT
TATCGGTGAGTCAGGAGGAGGAGGAAGTTAGAGAGGGAGGATGGGGAGGA
TGACGCCGTTTTTTGCCAGTTAGATGAAGCTGACTAAGTTTGAACGCTGT
CTGGTCTCTCTCACCTTGATCCTCCGTCCCTCCCTCGCTCCCTCCCCCCT
CCCTTCCTCCCTCCCTTATACTCCGTGTGTCCTAGATACGGAAGGGGCTT
TCATGGCCGAGCGTGCCGCCGAGATGGGCCAAGCCCTTATCGACCATCTC
CAACGCATCCTGGCCTCCAATCAATGCAAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCAGGCGGAGGACGTGGCGGGCTTGACCCTGAAGACGGTGTTGG
GCAACGTGTGGGTGCTTCGGTGTTTGAATGATGCAGAATTAATGCAGACA
CTGCAGCACTTGCCTGCGTTCTTGGATAGTGAGCCGGAGGTGAGGGAGGG
AGGGAAGGAAGGAAGGAGGGAGGAAAGGCGGGAGGGAAGGAGGGGACAAC
AGGTGTCTCATGCTCATCCACACTCTCCCTCCCTCCCCCCCCTTTTCCCT
CCTGACTCTTCCTCAGGTGGTTCTTGTGGTGATAGACAGCATCGCCCTCC
CCTTCCGACAGGATAAGATGTTCCAAACGGAGTCGGCAGTGGCTAAAGCG
CGAGTCGTGAACGTCATGGCCCGCGAATTGAATGCCCTTGCCGAGGCGCG
GAATGTGGCAGTAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGTAGATTGGACCACTTCGCACATGTCCGC
AAGCTCACGCAGTCACTACCTTCCCTCCCTCCCTCCCTCCCTCGCTCCCG
CGTTCTTTCTCTTTTTCACAGGTGGTGGTGACCAATCAAATGACGACCAA
GGTCGATGACGCCCATTCAACTGTCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCCTTGCCCCAACCCTCGGCGAGTCCTGGGCCCCTGGTCCCGCCGTG
CGCCTGCTGCTATGGACGAACGACGTACGTTGCCATGACTAAGAAAGGAG
GGGGGGGGGGGGGGAGGGAAGGAACGAAGGGATACCTCAGTGGCCGTGGT
CGGATAATGCACCCTTCCCCTCCCTCCCTCCCTCCCTCCCAGATGGGTCT
CCGATGCGCCACCTTGCAGAAGCACCCGGGACAGGCACATTCCACAGTGG
CTTTTCGCGGTATGTAACCACTGCTGGGTATCTCTCCCTCCCTTCCTCCC
TTCCTCCCGCCCTCCCGCCCTCCCGCCCTTGCTCTGTCTCTTACTCCGTT
CACTGCAGCCTCGAATCCATTCACTCTTTCTTGCTCTTGCTTCCCTCCCT
CCCTCTCTCCTTCCCCCTCTCCTCGACCAGTCACGACTATGGGCATACGT
GACGTTTCCTCTTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCG
GAAGCGGCCTGCGCTGCCCCCTCGCTCTCCACCACCCCGTCAACAACAGT
AA
back to top

Coding sequence (CDS) from alignment at chr4:273463..275664+

>NO04G00810.1 ID=NO04G00810.1|Name=NO04G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr4:273463..275664+ (Nannochloropsis oceanica)
ATGCCACTGGGCAAGCGTCGCCCACTCTTCACTTTTGACCTGGAATGGCC
CGCAACCCAAGGTGCACTTCGTCGTAAGGGCTTTCGCAAAGCAGGCGAGC
TTCGGGAGGCCCTGCAAAAAGGGAAAGGCGAAGATCACCCCATCCTCACT
GCCTCCGATCTCGCCACCCGCGCCTTCACGCCCACCACCTCCGACGTCGA
CCTAATCCGCACTGTCCTCTCCGAGGCGGACGAGTCTCTCAATACTCCTC
CTTCCTCCTCCCTCCCCCTCCCCACCTCGGCCCTGGACCTCTTAAAGGCC
GCGCGTCAACCCGCCACCAGCACAGGAAGCAAAATCATAACCTTTTGTAG
GGCTATTGACACCATGCTGGGTGGGGGCGTACAGCGAGGGCAATTGATGG
AGATTGTGGGCATACCTGGAAGTGGGAAGACACAGGTGGGGATACAGCTC
GCGATTGACGCGCAGATTCCGCGGTCATTCCGGGGGGCGGGGGGGAAGGC
GGTGTTTATCGATACGGAAGGGGCTTTCATGGCCGAGCGTGCCGCCGAGA
TGGGCCAAGCCCTTATCGACCATCTCCAACGCATCCTGGCCTCCAATCAA
TGCAAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGGCGGAGGACGTGGC
GGGCTTGACCCTGAAGACGGTGTTGGGCAACGTGTGGGTGCTTCGGTGTT
TGAATGATGCAGAATTAATGCAGACACTGCAGCACTTGCCTGCGTTCTTG
GATAGTGAGCCGGAGGTGGTTCTTGTGGTGATAGACAGCATCGCCCTCCC
CTTCCGACAGGATAAGATGTTCCAAACGGAGTCGGCAGTGGCTAAAGCGC
GAGTCGTGAACGTCATGGCCCGCGAATTGAATGCCCTTGCCGAGGCGCGG
AATGTGGCAGTGGTGGTGACCAATCAAATGACGACCAAGGTCGATGACGC
CCATTCAACTGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTGCCC
CAACCCTCGGCGAGTCCTGGGCCCCTGGTCCCGCCGTGCGCCTGCTGCTA
TGGACGAACGACATGGGTCTCCGATGCGCCACCTTGCAGAAGCACCCGGG
ACAGGCACATTCCACAGTGGCTTTTCGCGTCACGACTATGGGCATACGTG
ACGTTTCCTCTTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCGG
AAGCGGCCTGCGCTGCCCCCTCGCTCTCCACCACCCCGTCAACAACAGTA
A
back to top
Synonyms
Publications