NO04G00770.1, NO04G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00770.1
Unique NameNO04G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1854
Alignment locationchr4:263489..266913 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:263489..266913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00770.1 vs.
Match: EWM28479.1 (isoform a, partial [Nannochloropsis gaditana])

HSP 1 Score: 367.9 bits (943), Expect = 6.000e-98
Identity = 180/218 (82.57%), Postives = 193/218 (88.53%), Query Frame = 0 
Query:    1 MPPGP-PLSSSTNA----YGPASVVSSSLNDRGAGAP-RVRRPKRKKPLDPTGSIMLQMEGEPFWTDWRDKPVIQPHSSYFKYLTPPAANLHNPISSLPLFHLRSIVIRDKEKQKGPIFVAKWDPTGRRLLTGSESGYVVVIQGTPIKTWMAHDNAIKCMQWSANGNFMLTGARNGIIKYWARLNSVSAYDLKAHDGEVTAVSFAPSDTKFVSSSDDQ 213
            MPPGP P   + NA    YGPA   SS + ++G  A  R RRPKRKKPLDPT ++MLQMEG PFWT WRD+PVIQPHSSYFKYLTPPAANLHNP+SSLPLFHLRSIVIRDKEKQKGPIFVA WDPTGRRLLTGSESGYVVVIQGTPIKTWMAHDNAIKCM+WS NGNFMLTGARNGIIKYWARLNSV+A+DL+AH+GEVTAVSFAPSD KFVSSSDDQ
Sbjct:    1 MPPGPSPAFDANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIKTWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYWARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQ 218
The following BLAST results are available for this feature:
BLAST of NO04G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28479.16.000e-9882.57isoform a, partial [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00770NO04G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00770.1NO04G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00770.1.cds1NO04G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00770.1.cds2NO04G00770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00770.1.cds3NO04G00770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00770.1.cds4NO04G00770.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00770.1.cds5NO04G00770.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00770.1.cds6NO04G00770.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00770.1.cds7NO04G00770.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00770.1.cds8NO04G00770.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00770.1.cds9NO04G00770.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00770.1.cds10NO04G00770.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00770.1.cds11NO04G00770.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00770.1 ID=NO04G00770.1|Name=NO04G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp
ACAGACGTGGTGTCGGAGCCAGCCGGGCAAAAATAGGCCCCGGAACCCAC
GACTTCCTTTCTTCCATTCTTCACCTCCCGACCCTAGCCTCCTACAACGA
TCATGCCTCCCGGCCCTCCTCTAAGCAGCAGCACCAACGCCTATGGCCCT
GCCTCAGTCGTCTCCTCATCACTTAATGACAGAGGCGCAGGAGCCCCCCG
CGTACGTCGACCCAAGCGAAAGAAGCCATTGGATCCCACGGGGTCTATCA
TGCTGCAAATGGAAGGCGAGCCCTTTTGGACGGATTGGCGGGACAAGCCT
GTCATTCAGCCCCACTCCTCCTACTTCAAGTACCTCACCCCCCCGGCCGC
CAATCTGCACAATCCCATTTCCTCCCTCCCGCTCTTTCACCTTCGTTCCA
TCGTCATCCGCGACAAGGAGAAACAAAAAGGGCCCATCTTCGTCGCGAAG
TGGGACCCCACGGGTCGGCGTCTCTTGACAGGGAGCGAGTCGGGCTATGT
GGTGGTGATCCAGGGAACGCCCATCAAGACCTGGATGGCGCACGATAATG
CGATCAAGTGCATGCAGTGGTCAGCTAACGGCAACTTTATGCTTACCGGT
GCCCGCAACGGCATCATCAAATACTGGGCGCGGCTCAACAGTGTGTCGGC
CTATGACCTCAAGGCGCATGATGGGGAGGTCACAGCCGTTTCCTTCGCGC
CAAGCGACACCAAGTTTGTGTCGTCGAGCGATGATCAGACGTTGAAGGTG
TGGGATTTTGCACGGCATGAGGTGGATGTGGACTTGCAGGGGCACACCTG
GGACATAAAATCCGCGCAATGGCACCCGCATAAAGCCCTCGTGGCCTCGT
GTAGCAAGGACAGCACTGTGAAGCTCTGGGATCCCCGGGCGCCTGCCGGA
GGTCGGTGTGTCAACACGCTTTACGGCCACAAGAGCCAGGTGTTTAAGGT
GGCGTTCAATCCCAACGGCCGCTGGCTCTTGAGTGGAGGCCAAGATGCCC
TTATCAAGATGTGGGATCTGCGGATGATGGCGCAAGACATGGCCACCCTG
AGGGGACACAGGCGAGAGATCTCCTGCCTGGCCTGGCATCCATTCCACGA
AACCCTCCTCGTGTCAGGGGATAAAGAAGGCTGTCTGTTGTACTGGCTGA
CGGATCTCTCCGACAGGCCGCAGGCTGAGGTCTACGGGCACGCCCGAGAC
CGAGCCGTGTGGGACCTGGATTGGCATCCTCTCGGTCACACGCTGGCGAG
TGTCGGACACGACCACATGTGCAAGTTCTGGGCACGCAGTCGTCCTGGCG
ACCCCCTGGCTGGGGATGCCAATGAATACGAACACGCCACCTTATTGGGG
GGAATACGTCCTCTCTTGCTGGAGGAAGGGGAGGAGGACGAGGACGAGGA
CGAGGCAGGGGGCGAGGAGGGGGAGGAAGAGGAGGAGGAGGAGGAGGAAG
AGGAAGGGAATGGAGGAAAAAAGAGGAGGAGAAAGAAGAAGAAGCGGCGG
GAGGGTGATGAGGAGGTTGTGGAGCTGCCGGGGGTGGGCGCCACGCATGT
GATGGACAAGACCGTCGTCGCCACCACGGGCCCCAATTCTCTTAACATCG
AGTCCGTTCGCGCCAATCTCCGCGACCAAAATATCATTCCTATGCCTGCC
CGACGGGGCGGGAGGGACGGAGGGTGGGAGGGAGGAGGAGAGGGAGGACG
AGGTGGAGGAGGAGGGAGATTTTTCGGGGGAGGGGGAGGGGGGAGGGAGG
GAGGTACGGAGGGAGGGGGAGAGGGGAGGGGGGAGGCAGATTTGGAGGAG
GGGGAGGGAGAGGGGATTTTGTCTGTCATGGATGTGGGGGTACTGGACAT
ATAA
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protein sequence of NO04G00770.1

>NO04G00770.1-protein ID=NO04G00770.1-protein|Name=NO04G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MPPGPPLSSSTNAYGPASVVSSSLNDRGAGAPRVRRPKRKKPLDPTGSIM
LQMEGEPFWTDWRDKPVIQPHSSYFKYLTPPAANLHNPISSLPLFHLRSI
VIRDKEKQKGPIFVAKWDPTGRRLLTGSESGYVVVIQGTPIKTWMAHDNA
IKCMQWSANGNFMLTGARNGIIKYWARLNSVSAYDLKAHDGEVTAVSFAP
SDTKFVSSSDDQTLKVWDFARHEVDVDLQGHTWDIKSAQWHPHKALVASC
SKDSTVKLWDPRAPAGGRCVNTLYGHKSQVFKVAFNPNGRWLLSGGQDAL
IKMWDLRMMAQDMATLRGHRREISCLAWHPFHETLLVSGDKEGCLLYWLT
DLSDRPQAEVYGHARDRAVWDLDWHPLGHTLASVGHDHMCKFWARSRPGD
PLAGDANEYEHATLLGGIRPLLLEEGEEDEDEDEAGGEEGEEEEEEEEEE
EGNGGKKRRRKKKKRREGDEEVVELPGVGATHVMDKTVVATTGPNSLNIE
SVRANLRDQNIIPMPARRGGRDGGWEGGGEGGRGGGGGRFFGGGGGGREG
GTEGGGEGRGEADLEEGEGEGILSVMDVGVLDI*
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mRNA from alignment at chr4:263489..266913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00770.1 ID=NO04G00770.1|Name=NO04G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=3425bp|location=Sequence derived from alignment at chr4:263489..266913- (Nannochloropsis oceanica)
ACAGACGTGGTGTCGGAGCCAGCCGGGCAAAAATAGGCCCCGGAACCCAC
GACTTCCTTTCTTCCATTCTTCACCTCCCGACCCTAGCCTCCTACAACGA
TCATGCCTCCCGGCCCTCCTCTAAGCAGCAGCACCAACGCCTATGGCCCT
GCCTCAGTCGTCTCCTCATCACTTAATGACAGAGGCGCAGGAGCCCCCCG
CGTACGTCGACCCAAGCGAAAGAAGCCATTGGATCCCACGGGGTCTATCA
TGCTGCAAATGGAAGGCGAGCCCTTTTGGACGGATTGGCGGGACAAGCCT
GTCATTCAGGTATGGCCAGAAAGGAATGAAGAGAAATGGGCGAGGGGTAG
CAAAGCCATCCTAGAGAGCAGGGACAAATACATGGCGACGTGTCCACCGA
ACCAATTTTTCCATCCTCACCTCTCCGTCTCCCTCCCTCCCTCTTCCCTA
CCCCAAGCCCCACTCCTCCTACTTCAAGTACCTCACCCCCCCGGCCGCCA
ATCTGCACAATCCCATTTCCTCCCTCCCGCTCTTTCACCTTCGTTCCATC
GTCATCCGCGACAAGGAGAAACAAAAAGGGCCCATCTTCGTCGCGAAGTG
GGACCCCACGGGTCGGCGTCTCTTGACAGGGAGCGAGTCGGGCTATGTGG
TGGTGATCCAGGGAACGCCCATCAAGACCTGGATGGTGAGTTGGAGGGAG
AGAGGGAGGGAGGGAAGGAGGGAAGGAAGGGGGTTGGACCCTTGCATTGG
GCTCAGCGCGCAGGGAAACTGAAACGCTGACTCTCGCTTTCATTTCTCTG
CTCCTCCTCCTCCCTCCTTCCTTCCCTTCCTCCCTCCCTTCCTCTCTTTC
TCTCTAGGCGCACGATAATGCGATCAAGTGCATGCAGTGGTCAGCTAACG
GCAACTTTATGCTTACCGGTGCCCGCAACGGCATCATCAAGTACGTCCCT
CCATCCCTTCCTCCCTTCCTTCCTTCCTCCCTCACGCCCCCTGCCTTTCA
CCTCCGGTCTACTCATCCCTCCCTCCCTCCATTTTCCTCCCTCCCTCCCT
TCCTTATCCCGACATAAAGATACTGGGCGCGGCTCAACAGTGTGTCGGCC
TATGACCTCAAGGCGCATGATGGGGAGGTCACAGCCGTTTCCTTCGCGCC
AAGCGACACCAAGTTTGTGTCGTCGAGCGATGATCAGGCAGGGAGGGAGG
AAGGAAGGAAGGGAGGGAGGGAGGGAGGGTAGACGATGAACATGAGAGGA
TTGACTGTTTGTTCACCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCCC
TCCCTCCCTCCCTCGTGTCCATGAGAGCAGACGTTGAAGGTGTGGGATTT
TGCACGGCATGAGGTGGATGTGGACTTGCAGGGGCACACCTGGTGAGGAG
AAGGGAGGGAGGGAGGGAGGGAGGGAAGGAATAAGGAAATGGAACAAATG
CCAACTAAAGCCCCCTCCCTCCCTCCTTCCCTCCCTCCCTCTCTCTCTTT
CGTTCGTTAACTGCTATCGTCGCAGGGACATAAAATCCGCGCAATGGCAC
CCGCATAAAGCCCTCGTGGCCTCGTGTAGCAAGGACAGCACTGTGAAGCT
CTGGGATCCCCGGGCGCCTGCCGGAGGTCGGTGTGTCAACACGCTTTACG
GCCACAAGAGCCAGGTGTTTAAGGTACACCCTCCCTCCCTCGTTCCATCC
CTCCCTCCCTCCTTTTCACTGCTTAGACATGCGTCTTCATGGATTCGGTC
CTGACCCTCCTTCTCATACATGCATTACCCTCTCTATCTTCCCTCTTCCC
CTCTCTCCTTCCGTCCCTCCTTTCCTTTTTCCTGCAGGTGGCGTTCAATC
CCAACGGCCGCTGGCTCTTGAGTGGAGGCCAAGATGCCCTTATCAAGATG
TGGGATCTGCGGATGATGGTACGCCCTCCCTCTCTCCCTCCCTCCCTCCC
TCCCTCCTCCTCCGGGCTTTTTCGTGTTCGTTTCCCTTCCATCCCAAAAT
TGTCGACACCCCCCTCCTCATGCACCCGCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCCCTCTTGTCACAGGCGCAAGACATGGCCACCCTGAGG
GGACACAGGCGAGAGATCTCCTGCCTGGCCTGGCATCCATTCCACGAAAC
CCTCCTCGTGTCAGGGGATAAAGAAGGCTGTCTGTTGTACTGGCTGACGG
ATCTCTCCGACAGGCCGCAGGCTGAGGTCTACGGGCACGCCCGGTAAGGA
GGGAGGGAGGGAGGGGGGGAGGAGACGATCCGATCCGCAGGAGGGGAGGA
GACGATCCGATCCGCTGCCAGCTCCAGTTTTGACGGTCTGAGGAATCACC
TTCACTAATCCATCGCTTCCTACCCCCCGCCCTCGCCCAGAGACCGAGCC
GTGTGGGACCTGGATTGGCATCCTCTCGGTCACACGCTGGCGAGTGTCGG
ACACGACCACATGTGCAAGTTCTGGGCACGCAGTCGGTACGCCCTCCCTC
CCTCCCTCCCTCCCCCTCTTAAAGTTGGGCGGCCTGGGACTCGGATTGGC
ATCTTCTCGGTCACATACCTGGCCGTGCCCGAAGCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTGATTCTTTTGTATTCTGACGAGA
TACCCCCTGTCTGTGGCTACATTTACTACCCTCTTTCATCTTGAACCTCC
CTCCCTCCCTCCCTCCCTCCTAGTCCTGGCGACCCCCTGGCTGGGGATGC
CAATGAATACGAACACGCCACCTTATTGGGGGGAATACGTCCTCTCTTGC
TGGAGGAAGGGGAGGAGGACGAGGACGAGGACGAGGCAGGGGGCGAGGAG
GGGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAAGGGAATGGAGGAAA
AAAGAGGAGGAGAAAGAAGAAGAAGCGGCGGGAGGGTGATGAGGAGGTTG
TGGAGCTGCCGGGGGTGGGCGCCACGCATGTGATGGACAAGACCGTCGGT
ACGTCCTTCCCTCCCTCCCTCTCTCCCTCCCTCCCTTCTTCCCTCCCTCC
CTCCCTCCCTACATTTCCCTTCTGTCCGCCCACGTCTTGTCTCTCCCTCT
CTCTCTCTCTCCCTTCCTCCCTCCCTCCCCTTTCGCAGTCGCCACCACGG
GCCCCAATTCTCTTAACATCGAGTCCGTTCGCGCCAATCTCCGCGACCAA
AATATCATTCCTATGCCTGCCCGACGGGGCGGGAGGGACGGAGGGTGGGA
GGGAGGAGGAGAGGGAGGACGAGGTGGAGGAGGAGGGAGATTTTTCGGGG
GAGGGGGAGGGGGGAGGGAGGGAGGTACGGAGGGAGGGGGAGAGGGGAGG
GGGGAGGCAGATTTGGAGGAGGGGGAGGGAGAGGGGATTTTGTCTGTCAT
GGATGTGGGGGTACTGGACATATAA
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Coding sequence (CDS) from alignment at chr4:263489..266913-

>NO04G00770.1 ID=NO04G00770.1|Name=NO04G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at chr4:263489..266913- (Nannochloropsis oceanica)
ATGCCTCCCGGCCCTCCTCTAAGCAGCAGCACCAACGCCTATGGCCCTGC
CTCAGTCGTCTCCTCATCACTTAATGACAGAGGCGCAGGAGCCCCCCGCG
TACGTCGACCCAAGCGAAAGAAGCCATTGGATCCCACGGGGTCTATCATG
CTGCAAATGGAAGGCGAGCCCTTTTGGACGGATTGGCGGGACAAGCCTGT
CATTCAGCCCCACTCCTCCTACTTCAAGTACCTCACCCCCCCGGCCGCCA
ATCTGCACAATCCCATTTCCTCCCTCCCGCTCTTTCACCTTCGTTCCATC
GTCATCCGCGACAAGGAGAAACAAAAAGGGCCCATCTTCGTCGCGAAGTG
GGACCCCACGGGTCGGCGTCTCTTGACAGGGAGCGAGTCGGGCTATGTGG
TGGTGATCCAGGGAACGCCCATCAAGACCTGGATGGCGCACGATAATGCG
ATCAAGTGCATGCAGTGGTCAGCTAACGGCAACTTTATGCTTACCGGTGC
CCGCAACGGCATCATCAAATACTGGGCGCGGCTCAACAGTGTGTCGGCCT
ATGACCTCAAGGCGCATGATGGGGAGGTCACAGCCGTTTCCTTCGCGCCA
AGCGACACCAAGTTTGTGTCGTCGAGCGATGATCAGACGTTGAAGGTGTG
GGATTTTGCACGGCATGAGGTGGATGTGGACTTGCAGGGGCACACCTGGG
ACATAAAATCCGCGCAATGGCACCCGCATAAAGCCCTCGTGGCCTCGTGT
AGCAAGGACAGCACTGTGAAGCTCTGGGATCCCCGGGCGCCTGCCGGAGG
TCGGTGTGTCAACACGCTTTACGGCCACAAGAGCCAGGTGTTTAAGGTGG
CGTTCAATCCCAACGGCCGCTGGCTCTTGAGTGGAGGCCAAGATGCCCTT
ATCAAGATGTGGGATCTGCGGATGATGGCGCAAGACATGGCCACCCTGAG
GGGACACAGGCGAGAGATCTCCTGCCTGGCCTGGCATCCATTCCACGAAA
CCCTCCTCGTGTCAGGGGATAAAGAAGGCTGTCTGTTGTACTGGCTGACG
GATCTCTCCGACAGGCCGCAGGCTGAGGTCTACGGGCACGCCCGAGACCG
AGCCGTGTGGGACCTGGATTGGCATCCTCTCGGTCACACGCTGGCGAGTG
TCGGACACGACCACATGTGCAAGTTCTGGGCACGCAGTCGTCCTGGCGAC
CCCCTGGCTGGGGATGCCAATGAATACGAACACGCCACCTTATTGGGGGG
AATACGTCCTCTCTTGCTGGAGGAAGGGGAGGAGGACGAGGACGAGGACG
AGGCAGGGGGCGAGGAGGGGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAG
GAAGGGAATGGAGGAAAAAAGAGGAGGAGAAAGAAGAAGAAGCGGCGGGA
GGGTGATGAGGAGGTTGTGGAGCTGCCGGGGGTGGGCGCCACGCATGTGA
TGGACAAGACCGTCGTCGCCACCACGGGCCCCAATTCTCTTAACATCGAG
TCCGTTCGCGCCAATCTCCGCGACCAAAATATCATTCCTATGCCTGCCCG
ACGGGGCGGGAGGGACGGAGGGTGGGAGGGAGGAGGAGAGGGAGGACGAG
GTGGAGGAGGAGGGAGATTTTTCGGGGGAGGGGGAGGGGGGAGGGAGGGA
GGTACGGAGGGAGGGGGAGAGGGGAGGGGGGAGGCAGATTTGGAGGAGGG
GGAGGGAGAGGGGATTTTGTCTGTCATGGATGTGGGGGTACTGGACATAT
AA
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Synonyms
Publications