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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1645428..1647958 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05730.2 vs.
Match: EWM30047.1 (Dihydrodipicolinate reductase [Nannochloropsis gaditana]) HSP 1 Score: 405.6 bits (1041), Expect = 1.300e-109 Identity = 207/258 (80.23%), Postives = 227/258 (87.98%), Query Frame = 0
Query: 14 VLLLVVLFPALVTSFVTLHGAYKPQQQPRHSSLRMIAAAPKVAVMVNGLPGAMGKEVAAACLRRGLAVCSVGLTGPQIEEESVEVDDGEGGQKQTVRLVKGPLTGNGDEECDARLQGLLAGYRDSKTRLIAVDYTHPTAVNPNGKLYARHKLDFVMGTTGGDREKLMDDVAAGGIYAVIAPNMAKQIVALQAGLETMAATFPGAFEGYTLNVVESHQSSKADTSGTAKALISSFGKLLGKAYHVEDVIRMIRDREGQV 272
+ LL+V FPALV+SFV + + Q Q R S LRM+A PKVAVMVNGLPGAMGKEVAAACLRRGL VCSVGLTGPQ++EE V+VDDGEGG+ QT+RLVKGP+TG GDEECDARLQGL+AGYR+S TRLIAVDYTHPTAVNPNG LYARHK+DFVMGTTGGDR+KL+ DV GIYAVIAPNMAKQIVALQAGLETMA TFPGAFEGY L VVESHQSSKADTSGTAKALI+SFG L+GK Y VEDVI MIRDREGQ+
Sbjct: 3 LFLLLVAFPALVSSFVGMLPSRHKQSQGRQSQLRMMAKLPKVAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRVVESHQSSKADTSGTAKALIASFGTLVGKPYKVEDVIAMIRDREGQL 260
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05730.2 ID=NO03G05730.2|Name=NO03G05730.2|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp
ACAGGCTCGGCTATCTTTTGGGCCGTGTCGTCTGCACCACGCTGCTTCCT
TATCTCCTTCTTTTGGCAGTCCAAGCCACTCTTCCCACGCCCAGCTATTG
CAATGCCTGCCGTTCCTTCCACGCGAGGAGCAAGCGCACTCGTGCTCTTG
CTCGTTGTCCTCTTCCCGGCCCTGGTCACCTCCTTCGTTACCCTCCATGG
TGCATACAAGCCCCAACAGCAACCTCGGCATTCGAGCCTCCGCATGATTG
CTGCCGCTCCCAAGGTCGCGGTGATGGTTAATGGTTTGCCGGGTGCTATG
GGCAAGGAAGTGGCTGCGGCCTGCCTGCGAAGAGGACTGGCAGTGTGCTC
GGTGGGCTTGACGGGTCCGCAAATTGAGGAGGAGAGCGTGGAGGTGGATG
ATGGGGAGGGCGGCCAGAAGCAGACAGTGCGCTTGGTGAAGGGGCCCCTC
ACGGGGAACGGCGACGAGGAGTGCGACGCCCGGTTGCAAGGCCTGCTGGC
CGGCTACCGTGACAGCAAAACGCGGCTGATTGCCGTGGACTACACTCATC
CCACTGCTGTGAACCCAAATGGCAAGCTCTACGCCCGCCACAAGCTCGAC
TTCGTCATGGGCACGACGGGCGGGGATCGGGAAAAGCTGATGGACGACGT
GGCTGCGGGCGGGATCTACGCCGTCATTGCCCCCAATATGGCGAAGCAGA
TCGTGGCCTTGCAGGCGGGCTTGGAGACGATGGCGGCCACGTTTCCGGGG
GCCTTCGAAGGCTACACCCTCAATGTGGTGGAGTCCCACCAGAGCAGCAA
GGCGGACACCAGCGGCACGGCCAAGGCCTTGATCAGCTCCTTTGGGAAGC
TGCTGGGCAAGGCCTACCATGTGGAGGACGTGATCCGCATGATCCGGGAT
CGGGAGGGGCAGGTAAGGATGGTGGGGTTCCGGAAAGGTGTGTGCGAGGA
CGTCATTAAGGAGAAGCCCTCCTGAAGCAGGTTCTTCCATCCCGACCTCC
ACGAGAGTCCAACCTCTTGGAAAAGCCGCCTTGGTATCCCATCCGTTTTC
ATTCTTTTATCTTCTATTCCTCCTCTCCTCCCTCCTTCCTCCCTTTCTCT
CCCCCTCTCCTTCAGCTCGGCTTCGGTGTGCCCGAGGCCGGTTTGGGCGG
ACACGCCTTCCACACCTACCAACTCCTCTCACCAGACGGCAGCGTGGAGT
TCCAATTCCGACACAACGTGGTGGGCCGCCGTGTCTATGCCGAGGGGACG
GTGGATGCGTTGGTATTTTTGGCTAAGCAGGCGGGCAGTGAGAAGAAGGT
CTACAATATGATTGACGTCTTGAAGGCGGGAGCCATGTAGGGACGGAGGG
AGGGTAGGGAGGAGGGAGGGTAGGGAGGAGGGAGGGTGAGGA back to topprotein sequence of NO03G05730.2 >NO03G05730.2-protein ID=NO03G05730.2-protein|Name=NO03G05730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MPAVPSTRGASALVLLLVVLFPALVTSFVTLHGAYKPQQQPRHSSLRMIA
AAPKVAVMVNGLPGAMGKEVAAACLRRGLAVCSVGLTGPQIEEESVEVDD
GEGGQKQTVRLVKGPLTGNGDEECDARLQGLLAGYRDSKTRLIAVDYTHP
TAVNPNGKLYARHKLDFVMGTTGGDREKLMDDVAAGGIYAVIAPNMAKQI
VALQAGLETMAATFPGAFEGYTLNVVESHQSSKADTSGTAKALISSFGKL
LGKAYHVEDVIRMIRDREGQVRMVGFRKGVCEDVIKEKPS* back to topmRNA from alignment at chr3:1645428..1647958- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05730.2 ID=NO03G05730.2|Name=NO03G05730.2|organism=Nannochloropsis oceanica|type=mRNA|length=2531bp|location=Sequence derived from alignment at chr3:1645428..1647958- (Nannochloropsis oceanica)
ACAGGCTCGGCTATCTTTTGGGCCGTGTCGTCTGCACCACGCTGCTTCCT
TATCTCCTTCTTTTGGCAGTCCAAGCCACTCTTCCCACGCCCAGCTATTG
CAATGCCTGCCGTTCCTTCCACGCGAGGTAAGGCAATCTCCCCTATTTGC
CGTGCCGTCCCCACGCTTGGCGCCAATTAAATTTGCCATTATCCCTTCCG
CCTTTATAATCCCCTAGGAGCAAGCGCACTCGTGCTCTTGCTCGTTGTCC
TCTTCCCGGCCCTGGTCACCTCCTTCGTTACCCTCCATGGTGCATACAAG
CCCCAACAGCAACCTCGGCATTCGAGCCTCCGCATGATTGCTGCCGCTCC
CAAGGTACGGTCAACTCCTTTCATTCTTCTACATGTGTGTGCCTTTATCA
TTCTAAGATATGTACTTGTCGCATCGGTGACCTTGAGATGGATTTATTTC
CATGCCTGTGGTTCTCCTCCCGTGCTCATCCCGTCCTCTCTATCTCCCCC
CCTCCCTCGGCCATGTGCCCTCTAGGTCGCGGTGATGGTTAATGGTTTGC
CGGGTGCTATGGGCAAGGAAGTGGCTGCGGCCTGCCTGCGAAGAGGACTG
GCAGTGTGCTCGGTGGGCTTGACGGGTCCGCAAATTGGTAGGTGCGGGGA
GGGAAGAGGAGAGAAGGGAGCGAAGGAGAAATGCAGGAGGCTATCCTCAT
CGCTTCTTATATTTTTTCTTTTCTTCTCCTCCACTACCGCCATCCCAAAG
AGGAGGAGAGCGTGGAGGTGGATGATGGGGAGGGCGGCCAGAAGCAGACA
GTGCGCTTGGTGAAGGGGCCCCTCACGGGGAACGGCGACGAGGAGTGCGA
CGCCCGGTTGCAAGGTGAGGCGAGGGGGTAGGATGTGGGGGAAGTATGAA
GAGAAAGGGCAGCGTGGGTGTATCGCCGGGTGAAATCACTCGAATCTGGC
TCCTGACTTCCTCTCTCTGTCCTCCCTCCCTCTCTCCAATCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
ACCACACCAGGCCTGCTGGCCGGCTACCGTGACAGCAAAACGCGGCTGAT
TGCCGTGGACTACACTCATCCCACTGCTGTGAACCCAAATGGCAAGCTCT
ACGCCCGCCACAAGCTCGACTTCGTCATGGTACACGGGCATCTCCTCCCT
CCCTCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCTGCGCTTCCTGCCTGC
CCACTCTACCCTCCCCCTGTCCCCCTTCCTCTAACCTTAAACCAGGGCAC
GACGGGCGGGGATCGGGAAAAGCTGATGGACGACGTGGCTGCGGGCGGGA
TCTACGCCGTCATTGCCCCCAATATGGCGAAGCAGATCGTGGCCTTGCAG
GTGGAGAGGAGGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGTGGAACGAAGGAAAGGTGGCATGTCGGAGGGAGGCCAGAACTGATG
CTCACACAATCACATACACACCCGTTAGGCGGGCTTGGAGACGATGGCGG
CCACGTTTCCGGGGGCCTTCGAAGGCTACACCCTCAATGTACGTCGTCTT
GTCTGCCCTCCCTCCCTCCACGACTCGTTGCCGTCCACCCTTCTTCCCCT
CCTTCGAGTGTTTCTTATCCCCCTTTCCAGGAACATTTGTATCGTCCTTG
CCTCTCAAGTCACTCGGCTTCCCTCCCACCCTCCCTCCCGTCCTCCCCCT
CGGCCCTAGGTGGTGGAGTCCCACCAGAGCAGCAAGGCGGACACCAGCGG
CACGGCCAAGGCCTTGATCAGCTCCTTTGGGAAGCTGCTGGGCAAGGCCT
ACCATGTGGAGGACGTGATCCGCATGATCCGGGATCGGGAGGGGCAGGTA
AGGATGGTGGGGTTCCGGAAAGGTGTGTGCGAGGACGTCATTAAGGAGAA
GCCCTCCTGAAGCAGGTTCTTCCATCCCGACCTCCACGAGAGTCCAACCT
CTTGGAAAAGCCGCCTTGGTATCCCATCCGTTTTCATTCTTTTATCTTCT
ATTCCTCCTCTCCTCCCTCCTTCCTCCCTTTCTCTCCCCCTCTCCTTCAG
CTCGGCTTCGGTGTGCCCGAGGCCGGTTTGGGCGGACACGCCTTCCACAC
CTACCAACTCCTCTCACCAGACGGCAGGTACAAGTCAGGAGGGGGGAGAT
TGAGGCTCTTTATGCTTTTCCTCTTTGGTGATCTTCTCTGAGTGTCATTC
GGGCATCTTCCGTCTTTCACTCTCACTCAGACCCTCCCTCCCTCCCTCCC
TCCCTCCCCCCCGCCCTCCGTAACCCTGAAGCGTGGAGTTCCAATTCCGA
CACAACGTGGTGGGCCGCCGTGTCTATGCCGAGGGGACGGTGGATGCGTT
GGTATTTTTGGCTAAGCAGGCGGGCAGTGAGAAGAAGGTCTACAATATGA
TTGACGTCTTGAAGGCGGGAGCCATGTAGGGACGGAGGGAGGGTAGGGAG
GAGGGAGGGTAGGGAGGAGGGAGGGTGAGGA back to topCoding sequence (CDS) from alignment at chr3:1645428..1647958- >NO03G05730.2 ID=NO03G05730.2|Name=NO03G05730.2|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr3:1645428..1647958- (Nannochloropsis oceanica)
ATGCCTGCCGTTCCTTCCACGCGAGGAGCAAGCGCACTCGTGCTCTTGCT
CGTTGTCCTCTTCCCGGCCCTGGTCACCTCCTTCGTTACCCTCCATGGTG
CATACAAGCCCCAACAGCAACCTCGGCATTCGAGCCTCCGCATGATTGCT
GCCGCTCCCAAGGTCGCGGTGATGGTTAATGGTTTGCCGGGTGCTATGGG
CAAGGAAGTGGCTGCGGCCTGCCTGCGAAGAGGACTGGCAGTGTGCTCGG
TGGGCTTGACGGGTCCGCAAATTGAGGAGGAGAGCGTGGAGGTGGATGAT
GGGGAGGGCGGCCAGAAGCAGACAGTGCGCTTGGTGAAGGGGCCCCTCAC
GGGGAACGGCGACGAGGAGTGCGACGCCCGGTTGCAAGGCCTGCTGGCCG
GCTACCGTGACAGCAAAACGCGGCTGATTGCCGTGGACTACACTCATCCC
ACTGCTGTGAACCCAAATGGCAAGCTCTACGCCCGCCACAAGCTCGACTT
CGTCATGGGCACGACGGGCGGGGATCGGGAAAAGCTGATGGACGACGTGG
CTGCGGGCGGGATCTACGCCGTCATTGCCCCCAATATGGCGAAGCAGATC
GTGGCCTTGCAGGCGGGCTTGGAGACGATGGCGGCCACGTTTCCGGGGGC
CTTCGAAGGCTACACCCTCAATGTGGTGGAGTCCCACCAGAGCAGCAAGG
CGGACACCAGCGGCACGGCCAAGGCCTTGATCAGCTCCTTTGGGAAGCTG
CTGGGCAAGGCCTACCATGTGGAGGACGTGATCCGCATGATCCGGGATCG
GGAGGGGCAGGTAAGGATGGTGGGGTTCCGGAAAGGTGTGTGCGAGGACG
TCATTAAGGAGAAGCCCTCCTGA back to top
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